BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0172.0009.p (233 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG57.1 B3KG57_9BACI Integral membrane protein TerC 195 3e-48 B1DBV1.1 B1DBV1_9BACL Integral membrane protein TerC 174 8e-42 B1D7M6.1 B1D7M6_9BACL Integral membrane protein TerC 157 7e-37 C0ZAR8.1 C0ZAR8_BREBN Conserved hypothetical membrane protein 152 2e-35 B4BRV9.1 B4BRV9_9BACI Integral membrane protein TerC 147 7e-34 >B3KG57.1 B3KG57_9BACI Integral membrane protein TerC Length = 230 Score = 195 bits (496), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 114/228 (50%), Positives = 133/228 (58%), Gaps = 1/228 (0%) Query: 1 LNTSVLDFILPLLNIIFLDLILAGDNAIVIGLAARNLQGRTQKKAILLGTGGAVVLRIIA 60 + T+ +F L L+NI+FLDLILAGDNAIVIGLAARNL TQKKAI+ GT GAV+LRIIA Sbjct: 1 METTAAEFFLALINIVFLDLILAGDNAIVIGLAARNLPKETQKKAIIYGTAGAVILRIIA 60 Query: 61 TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGDSGGP-NIQAGGTLWAAVRTIIIADAAMG 119 T T D+ NI+AG L AA+RTII+ADAAMG Sbjct: 61 TILVVWLLNIPWLLLVGGVLLIGIAYKLLTDDNNDHGNIKAGNNLGAAIRTIIVADAAMG 120 Query: 120 LDXXXXXXXXXXXXXXLVVLGLLISVPIVVWGSTLFIKLMGRYPWIIYIGSAVLGLTASG 179 LD LV LGLLISVPIVVWGSTLFIKL+ R+PWIIY+GSAVL TAS Sbjct: 121 LDNVIAVAGAAKHNMILVTLGLLISVPIVVWGSTLFIKLINRFPWIIYVGSAVLAYTASS 180 Query: 180 MITEEKRIAPFVEEHPXXXXXXXXXXXXXXXAAGHWKRVRDHQKAAHT 227 MITEEK + E H AGH K+ ++ + T Sbjct: 181 MITEEKHFMGYFEGHQIIKYLFIAAIIIGVLTAGHLKKKSAARRQSST 228 >B1DBV1.1 B1DBV1_9BACL Integral membrane protein TerC Length = 233 Score = 174 bits (440), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 96/191 (50%), Positives = 121/191 (63%), Gaps = 1/191 (0%) Query: 6 LDFILPLLNIIFLDLILAGDNAIVIGLAARNLQGRTQKKAILLGTGGAVVLRIIATXXXX 65 +DF+L LLNI+F+DLILAGDNAIVIG+AARNL QKKA+L GT GA+ +RIIAT Sbjct: 6 VDFLLALLNIVFIDLILAGDNAIVIGMAARNLPQHQQKKAVLWGTAGAIGIRIIATVAVV 65 Query: 66 XXXXXXXXXXXX-XXXXXXXXXXXXTGDSGGPNIQAGGTLWAAVRTIIIADAAMGLDXXX 124 D +++AG TLW +++TIIIADAAMG+D Sbjct: 66 RLLGLPWLHLAGGILLLWIAYKLLVQEDDKHGDVKAGNTLWQSIQTIIIADAAMGIDNVI 125 Query: 125 XXXXXXXXXXXLVVLGLLISVPIVVWGSTLFIKLMGRYPWIIYIGSAVLGLTASGMITEE 184 LV+LGLLISVP++VWGSTLFIKL+ ++ WIIY+GS VLG TA+ MIT E Sbjct: 126 AVAGASHGNTVLVILGLLISVPVIVWGSTLFIKLINKFTWIIYLGSGVLGYTAAKMITHE 185 Query: 185 KRIAPFVEEHP 195 K F +E+P Sbjct: 186 KAFEEFFKENP 196 >B1D7M6.1 B1D7M6_9BACL Integral membrane protein TerC Length = 227 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 101/223 (45%), Positives = 127/223 (56%), Gaps = 2/223 (0%) Query: 6 LDFILPLLNIIFLDLILAGDNAIVIGLAARNLQGRTQKKAILLGTGGAVVLRIIATXXXX 65 +F+ LL+I+F+DLILAGDNAIVIG+AA+ L TQKKAIL GT GA++LRI+AT Sbjct: 4 FEFLTTLLSIVFIDLILAGDNAIVIGMAAKRLPKETQKKAILYGTCGAILLRIVATVLVV 63 Query: 66 XXXXXXXXXXXXXXXXXXXXXXXXTGDSGGPNIQAGGTLWAAVRTIIIADAAMGLDXXXX 125 + NI+A TLWA+V TII+ADAAMGLD Sbjct: 64 YLLQIPWLLVAGGVILLWIAYKLLVQEEDHENIKAESTLWASVWTIIVADAAMGLDNVIA 123 Query: 126 XXXXXXXXXXLVVLGLLISVPIVVWGSTLFIKLMGRYPWIIYIGSAVLGLTASGMITEEK 185 LV++GL+IS+PIVVWGSTLFIKL+ ++PWIIY GSAVL TAS MIT E Sbjct: 124 VAGAAQGHTLLVIIGLIISIPIVVWGSTLFIKLLSKFPWIIYAGSAVLAYTASKMITHEP 183 Query: 186 RIAPFVEEHPXXXXXXXXXXXXXXXAAGHW--KRVRDHQKAAH 226 + EE+ AG W + + H +AAH Sbjct: 184 AWKDWFEENQVVKWLVIAIAVVVVLGAGLWTNEWKKKHPQAAH 226 >C0ZAR8.1 C0ZAR8_BREBN Conserved hypothetical membrane protein Length = 228 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/189 (45%), Positives = 114/189 (60%) Query: 7 DFILPLLNIIFLDLILAGDNAIVIGLAARNLQGRTQKKAILLGTGGAVVLRIIATXXXXX 66 +F LL+I+ +DL+LAGDNA+VIG+AARNL QK+AI+ GT GA+V+R +AT Sbjct: 8 EFWTALLSIVIIDLVLAGDNALVIGMAARNLPAHQQKQAIIWGTVGAIVIRALATLAVVW 67 Query: 67 XXXXXXXXXXXXXXXXXXXXXXXTGDSGGPNIQAGGTLWAAVRTIIIADAAMGLDXXXXX 126 D+G N++A GTL AA+ TII+AD MGLD Sbjct: 68 LLKIPGLLLVGGLILIWIALKLLIQDNGHENMKASGTLGAAIWTIIVADTVMGLDNVIAV 127 Query: 127 XXXXXXXXXLVVLGLLISVPIVVWGSTLFIKLMGRYPWIIYIGSAVLGLTASGMITEEKR 186 LVV+GL+ISVPI+VWGSTL +KL+ +YP +IYIGS VL TA+ M+T EK Sbjct: 128 AGAAHGDFLLVVIGLIISVPIMVWGSTLILKLIEKYPIVIYIGSGVLAYTAANMVTGEKF 187 Query: 187 IAPFVEEHP 195 + PF +P Sbjct: 188 LTPFFAAYP 196 >B4BRV9.1 B4BRV9_9BACI Integral membrane protein TerC Length = 230 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 89/186 (47%), Positives = 112/186 (60%), Gaps = 4/186 (2%) Query: 7 DFILPLLNIIFLDLILAGDNAIVIGLAARNLQGRTQKKAILLGTGGAVVLRIIATXXXXX 66 +F LL+I+ +DL+LAGDNAIVIGLAARNL QKKA++ GT GAVV+R +AT Sbjct: 7 EFWTALLSIVIIDLVLAGDNAIVIGLAARNLPKHQQKKAVIWGTVGAVVIRAMATIFVVW 66 Query: 67 XXXXXXXXXXXXXXXXXXXXXXXTGDSGGPNIQAGGTLWAAVRTIIIADAAMGLDXXXXX 126 + G +I+AGG+LW AVRTIIIADA MGLD Sbjct: 67 LLKIPGLLLVGGLLLVWIAYKLLVEEKGHDDIEAGGSLWEAVRTIIIADALMGLDNVLAV 126 Query: 127 XXXXXXXXXLVVLGLLISVPIVVWGSTLFIKLMGRYPWIIYIGSAVLGLTASGMITEEKR 186 LV+LGLLISVPI+VWGSTL +K + R+P II IG+ +L TAS MI +E Sbjct: 127 AGAAHGHFLLVILGLLISVPIMVWGSTLILKWIERFPIIITIGAGILAWTASKMIVDE-- 184 Query: 187 IAPFVE 192 PF++ Sbjct: 185 --PFLK 188 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.142 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,056,586,712 Number of extensions: 30960620 Number of successful extensions: 75301 Number of sequences better than 1.0e-05: 371 Number of HSP's gapped: 74873 Number of HSP's successfully gapped: 452 Length of query: 233 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 102 Effective length of database: 1,826,543,238 Effective search space: 186307410276 Effective search space used: 186307410276 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)