BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0172.0008.p (215 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG58.1 B3KG58_9BACI Integral membrane protein TerC 181 3e-44 B1DBV2.1 B1DBV2_9BACL Integral membrane protein TerC 137 6e-31 O31603.1 YJBE_BACSU Uncharacterized membrane protein yjbE 134 7e-30 A1HML7.1 A1HML7_9FIRM Integral membrane protein TerC 131 3e-29 C0Z7B4.1 C0Z7B4_BREBN Conserved hypothetical membrane protein 125 2e-27 >B3KG58.1 B3KG58_9BACI Integral membrane protein TerC Length = 215 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 99/179 (55%), Positives = 123/179 (68%), Gaps = 1/179 (0%) Query: 2 LLGEILMINLVLSGDNAMVIAMASKNLPEQHXXXXXXXXXXXXXXXXCLLTFAAVLLLKV 61 +LG+IL+INLVLSGDNA+VIAMASK+LPE H C+LTF AVLLLK+ Sbjct: 1 MLGQILVINLVLSGDNALVIAMASKDLPEIHRKRAVWIGTAGAVLLRCILTFVAVLLLKI 60 Query: 62 PYIEAGGGIXXX-XXXXXXXXXXXXXXXXXXXXXVWKSVRTILLADFVMSLDNVLAIAGV 120 P+++AGG + +W +V TIL+ADFVMSLDNVLAIAG+ Sbjct: 61 PFLQAGGALLLIWIAVKLMMQKEHDPASMARASTIWGAVNTILIADFVMSLDNVLAIAGL 120 Query: 121 AKGDLALVVIGIALSIPIVVWGSGIIVSWLHRLPVLTYIGAYILAYTAGDMLLQDAKFG 179 A GDL+L+VIGI LSIPIVVWGSG+I L + PVL YIGA ILA+TAG+ML+QD++ G Sbjct: 121 ANGDLSLIVIGIILSIPIVVWGSGMISRLLQKFPVLLYIGAGILAFTAGEMLIQDSRVG 179 >B1DBV2.1 B1DBV2_9BACL Integral membrane protein TerC Length = 221 Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 108/183 (59%), Gaps = 6/183 (3%) Query: 5 EILMINLVLSGDNAMVIAMASKNLPEQHXXXXXXXXXXXXXXXXCLLTFAAVLLLKVPYI 64 +I++INL+LSGDNA+VIAMAS+ LP + CLLT AA+ LL++PY+ Sbjct: 9 QIVLINLLLSGDNAVVIAMASQQLPPKERKRAVWWGALAAVGLRCLLTLAAISLLQIPYL 68 Query: 65 EAGGGIXXXXXXXXXXXXXXXXXXXXXXXXVWKS------VRTILLADFVMSLDNVLAIA 118 +A G + KS VRTI+ ADF+MSLDNVLAIA Sbjct: 69 QAIGSLLLLYIAAKLLSDAGQEGEGDLHMPSRKSKSLSQAVRTIVAADFIMSLDNVLAIA 128 Query: 119 GVAKGDLALVVIGIALSIPIVVWGSGIIVSWLHRLPVLTYIGAYILAYTAGDMLLQDAKF 178 VA GD L+++GIALSIP+++WGS I+ + LH+ P L YIGA +L Y AG ML+ D Sbjct: 129 AVADGDTVLILLGIALSIPMIIWGSQILGTLLHKFPPLVYIGAGLLGYAAGGMLVHDPGM 188 Query: 179 GAV 181 A+ Sbjct: 189 DAL 191 >O31603.1 YJBE_BACSU Uncharacterized membrane protein yjbE Length = 218 Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 67/169 (39%), Positives = 104/169 (61%) Query: 9 INLVLSGDNAMVIAMASKNLPEQHXXXXXXXXXXXXXXXXCLLTFAAVLLLKVPYIEAGG 68 I+L+L GDNA+VIAMAS++LP++ LT AAV LL +P+++ G Sbjct: 15 IDLILGGDNAVVIAMASRHLPDKQRQQAIILGTFIAVAMRIGLTSAAVYLLNIPFLQCAG 74 Query: 69 GIXXXXXXXXXXXXXXXXXXXXXXXXVWKSVRTILLADFVMSLDNVLAIAGVAKGDLALV 128 GI +W+++RTI+LAD MSLDNV+A+AG + G+ +LV Sbjct: 75 GIFLLYLGYQLLIEKKDTKHIKSSTSLWRAIRTIVLADLFMSLDNVIAVAGASHGEFSLV 134 Query: 129 VIGIALSIPIVVWGSGIIVSWLHRLPVLTYIGAYILAYTAGDMLLQDAK 177 VIG+ +S+P+++WGS +I L ++P+L Y G+ +LAYT G+M+++D K Sbjct: 135 VIGLCVSVPVIIWGSKLIHIALEKIPLLIYAGSGLLAYTGGEMIVRDKK 183 >A1HML7.1 A1HML7_9FIRM Integral membrane protein TerC Length = 225 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 106/177 (59%) Query: 3 LGEILMINLVLSGDNAMVIAMASKNLPEQHXXXXXXXXXXXXXXXXCLLTFAAVLLLKVP 62 L I+M+N+VLSGDNA+VIAMAS++LP + +LT AV LLK+P Sbjct: 7 LFSIMMVNIVLSGDNAVVIAMASRSLPAKQQKMAILWGSAGAIGLRVILTVVAVALLKIP 66 Query: 63 YIEAGGGIXXXXXXXXXXXXXXXXXXXXXXXXVWKSVRTILLADFVMSLDNVLAIAGVAK 122 Y++ GG+ W +++TI++AD VMSLDN LAIA VA Sbjct: 67 YLQFAGGVLLVWIAAKLLLEEQHDETIEASKSFWGAIKTIIIADLVMSLDNTLAIAAVAN 126 Query: 123 GDLALVVIGIALSIPIVVWGSGIIVSWLHRLPVLTYIGAYILAYTAGDMLLQDAKFG 179 G+ L+ IG+ALSIP+++ GS +I+ + + P++ Y GA ++A+TAG+M++ D + G Sbjct: 127 GNYLLLAIGLALSIPLIICGSRLIMMLMEKFPIIVYAGAGLIAWTAGEMMVDDHRLG 183 >C0Z7B4.1 C0Z7B4_BREBN Conserved hypothetical membrane protein Length = 233 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 107/176 (60%) Query: 5 EILMINLVLSGDNAMVIAMASKNLPEQHXXXXXXXXXXXXXXXXCLLTFAAVLLLKVPYI 64 +I+MINLVLSGDNA+VIA+A +NL + +LTF A+ LLK+P++ Sbjct: 10 QIIMINLVLSGDNAVVIALACRNLSPELQKKATFWGSFGAIGLRIILTFIAIWLLKIPFV 69 Query: 65 EAGGGIXXXXXXXXXXXXXXXXXXXXXXXXVWKSVRTILLADFVMSLDNVLAIAGVAKGD 124 + GG+ ++++TI+ AD +MSLDNV+A+AG A G+ Sbjct: 70 QVVGGLLLIWIAVKLLKGEDEDSHIGGGASFVEALKTIIFADLIMSLDNVIAVAGAANGN 129 Query: 125 LALVVIGIALSIPIVVWGSGIIVSWLHRLPVLTYIGAYILAYTAGDMLLQDAKFGA 180 L LV+IG+ +SIP+++WGS +++ ++R P++ +GA +L YTAG+M++ D G+ Sbjct: 130 LILVIIGLTISIPLIIWGSQLLMKLMNRFPIIVLLGAALLGYTAGEMIVGDKAVGS 185 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.142 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 812,943,578 Number of extensions: 24473371 Number of successful extensions: 94749 Number of sequences better than 1.0e-05: 385 Number of HSP's gapped: 93930 Number of HSP's successfully gapped: 385 Length of query: 215 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 85 Effective length of database: 1,835,964,253 Effective search space: 156056961505 Effective search space used: 156056961505 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)