BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0172.0007.p
         (170 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KG59.1 B3KG59_9BACI Putative uncharacterized protein                138   2e-31
B1DBV3.1 B1DBV3_9BACL Putative uncharacterized protein                 97   3e-19
C0ZI43.1 C0ZI43_BREBN Hypothetical membrane protein                    55   2e-06
B8I312.1 B8I312_CLOCE Putative uncharacterized protein                 55   2e-06

>B3KG59.1 B3KG59_9BACI Putative uncharacterized protein
          Length = 170

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 95/170 (55%)

Query: 1   MSSKNDAKLGIFILAAGIVIXXXXXXXXXXXXRALWPLVILVPGLFLHVLFFSRRAPASV 60
           MSS+ D  LGIFI+ AG+VI            R LWPLV+L+PG+FLH+LFF RRA A+V
Sbjct: 1   MSSRKDLALGIFIVVAGVVILLGKLGVFGFLGRTLWPLVLLLPGIFLHILFFGRRASAAV 60

Query: 61  LLPAGILTVYGLLLGLCNTWGWGLMSHLWPLLLLGIAVGLYEYSLYSPGRNGGLTTTAXX 120
           L+P GILTVYGLL  +CN  GWGLM+ LWP+L+LG+AVGL+EY LY   R G     A  
Sbjct: 61  LIPGGILTVYGLLFFICNMGGWGLMASLWPVLILGVAVGLFEYYLYESPRPGAALPIALG 120

Query: 121 XXXXXXXXXXFSMLGTXXXXXXXXXXXXXXXXXXXXRGKPGGRKKWNGGW 170
                     F+ L T                    R +P    KW+ GW
Sbjct: 121 LTALSVVIFIFTWLQTGAFYIIALILIAAGAWMIFGRNRPRRNNKWSRGW 170


>B1DBV3.1 B1DBV3_9BACL Putative uncharacterized protein
          Length = 161

 Score = 97.4 bits (241), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 65/107 (60%)

Query: 4   KNDAKLGIFILAAGIVIXXXXXXXXXXXXRALWPLVILVPGLFLHVLFFSRRAPASVLLP 63
            N    GI +L AG+VI               WPL++L+PG+ LHV +F R  PA+VL+P
Sbjct: 3   NNKYSAGIIVLLAGVVILLGKLGVFSFLGAIFWPLLVLIPGILLHVFYFGRLLPAAVLVP 62

Query: 64  AGILTVYGLLLGLCNTWGWGLMSHLWPLLLLGIAVGLYEYSLYSPGR 110
            GILTV  LL  +CN +GW  + +LWPL LLG A+GLYEY L+   R
Sbjct: 63  GGILTVSALLFMVCNIFGWDALKYLWPLFLLGAAIGLYEYFLFGSSR 109


>C0ZI43.1 C0ZI43_BREBN Hypothetical membrane protein
          Length = 161

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 35  LWPLVILVPGLFLHVLFFSRRAP--ASVLLPAGILTVYGLLLGLCNTWGWGLMSHLWPLL 92
           LWP+ +L+PG+  H+ FF    P  A +L+P GIL VY  L      +  G MS  WP  
Sbjct: 31  LWPVFLLIPGIGFHIFFFMNPMPNRAGLLVPGGILLVYAPLFFFSQLFFHGDMSTTWPFF 90

Query: 93  LLGIAVGLYEYSLY 106
           L+G AVGL E  L+
Sbjct: 91  LIGPAVGLTELYLF 104


>B8I312.1 B8I312_CLOCE Putative uncharacterized protein
          Length = 171

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 3   SKNDAKLGIFILAAGIVIXXXXXXX----XXXXXRALWPLVILVPGLFLHVLFFSRRAPA 58
            KN + +G+ ++ AG V+                R  W  ++L+ GL     FF     +
Sbjct: 2   KKNYSFVGVLLIVAGAVLLVLKMLFGLDFLNLTTRDFWVFIVLLIGLTFEFSFFITGKNS 61

Query: 59  SVLLPAGILTVYGLLLGLCNTWGWGLMSHLWPLLLLGIAVGLYEYSLYSPGRNGGL 114
            +L+P GI T  GLL     T  W    + WP+ +L +A+GL++  L+S GR  GL
Sbjct: 62  GLLIPGGIFTTIGLLFMFEVTTNWYFAEYTWPVYILSVAIGLFQMYLFS-GREKGL 116


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.326    0.146    0.488 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 817,569,219
Number of extensions: 28227320
Number of successful extensions: 88186
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 88184
Number of HSP's successfully gapped: 5
Length of query: 170
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 44
Effective length of database: 1,873,648,313
Effective search space: 82440525772
Effective search space used: 82440525772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)