BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0172.0006.p (614 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG60.1 B3KG60_9BACI GTP-binding protein TypA 1102 0.0 B1DBV4.1 B1DBV4_9BACL GTP-binding protein TypA 1061 0.0 A6CMZ8.1 A6CMZ8_9BACI GTP-binding protein TypA/BipA 906 0.0 Q2B4W6.1 Q2B4W6_9BACI GTP-binding protein 905 0.0 A7GRY4.1 A7GRY4_BACCN GTP-binding protein TypA 897 0.0 >B3KG60.1 B3KG60_9BACI GTP-binding protein TypA Length = 613 Score = 1102 bits (2849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 532/612 (86%), Positives = 564/612 (92%) Query: 1 MHSRKDIRNIAIIAHVDHGKTTLVDQLLQQSGIFSAHEHLQERAMDSNDLERERGITILA 60 M SR IRNIAIIAHVDHGKTTLVDQLLQQSGIF HE LQERAMDSNDLERERGITILA Sbjct: 1 MQSRDQIRNIAIIAHVDHGKTTLVDQLLQQSGIFREHETLQERAMDSNDLERERGITILA 60 Query: 61 KNTAITYKEFLINIVDTPGHADFGGEVERIMKMVDGVLLVVDAYEGCMPQTKFVLRKALE 120 KNTAITYK+FLINIVDTPGHADFGGEVERIMKMVDGVLLVVDAYEGCMPQTKFVL KAL Sbjct: 61 KNTAITYKDFLINIVDTPGHADFGGEVERIMKMVDGVLLVVDAYEGCMPQTKFVLGKALA 120 Query: 121 QNLTPIVVVNKIDRPAARPKEVIDEVLDLFIELEANDDQLEFPVVYASALNGTSSMDPEK 180 NLTPIVVVNKIDRPAARP EVIDEVLDLFIEL ANDDQL+FPVVYASALNGTSSMDPEK Sbjct: 121 HNLTPIVVVNKIDRPAARPAEVIDEVLDLFIELGANDDQLDFPVVYASALNGTSSMDPEK 180 Query: 181 QDDNMLALYETITEHIPAPTEKVDEPLQFLVTLMDYNEYLGRIAIGRVNRGVIKQGQSVT 240 QDDNMLALYETI +HIP+PTEKVDEPLQFLVTLMDYNEYLGRIA+GRVNRGVIKQGQ V Sbjct: 181 QDDNMLALYETIIDHIPSPTEKVDEPLQFLVTLMDYNEYLGRIAVGRVNRGVIKQGQPVA 240 Query: 241 VIMRDGKSKTARIEKLFGFQGLKRVETEEXXXXXXXXXXXXXXXNIGETIADPQNPEALP 300 V++RDG +K ARIEKLFGFQGLKR+E E NIGETIADPQ+PEALP Sbjct: 241 VMLRDGSTKNARIEKLFGFQGLKRIEVAEAGAGDIVAIAGIKDINIGETIADPQHPEALP 300 Query: 301 VLKIDEPTMQMTFLVNNSPFAGKEGKWVTSRKLRERLFKELETDVSLRVLETDSPDAFIV 360 VLKIDEPT+QMTFLVNNSPFAG+EGKWVTSRKLR+RLFKELETDVSLRV ETDSPDA+IV Sbjct: 301 VLKIDEPTLQMTFLVNNSPFAGREGKWVTSRKLRDRLFKELETDVSLRVDETDSPDAYIV 360 Query: 361 SGRGELHLGILIENMRREGYEMQVSKPEVIVKEIDGVKMEPLERLMIDIPEESMGAVMES 420 SGRGELHL ILIENMRREGYE+QVSKPEVIV+EIDGVKMEP+ERL+ID+PEESMGAVMES Sbjct: 361 SGRGELHLSILIENMRREGYELQVSKPEVIVREIDGVKMEPIERLLIDVPEESMGAVMES 420 Query: 421 LGTRKAEMVNMINHGTGQVRLEFLIPARGLIGYNTYFLTLTRGYGVMNHAFDSYAPLIGG 480 LGTRKAEMVNM+N+G GQVRLEFLIPARGLIGY T+FLTLTRGYG+MNHAFDSY PL+GG Sbjct: 421 LGTRKAEMVNMVNNGNGQVRLEFLIPARGLIGYRTHFLTLTRGYGIMNHAFDSYGPLVGG 480 Query: 481 QVGGRHQGVLVSSETGTTTFYGMMGVEDRGILFLEPGTEIYEGMIVGEHTRDNDIIVNIC 540 QVGGRHQGVLVS+E G++TFYGMM VEDRG LFLEPGTEIYEGMIVGEHTRDNDI+VNIC Sbjct: 481 QVGGRHQGVLVSTENGSSTFYGMMSVEDRGTLFLEPGTEIYEGMIVGEHTRDNDIVVNIC 540 Query: 541 KEKALTNVRSATKDETVKMKTPRLFSLEGALEYLNDDEYCEITPKSVRLRKKILNKGERE 600 KEK LTNVRSATKD+TVK+KTP +FSLE ALEYLNDDEYCEITPKSVRLRKKILNK ERE Sbjct: 541 KEKQLTNVRSATKDDTVKLKTPVIFSLEQALEYLNDDEYCEITPKSVRLRKKILNKSERE 600 Query: 601 RVEKQRKAAQAS 612 R EK RK AQA+ Sbjct: 601 RAEKHRKMAQAN 612 >B1DBV4.1 B1DBV4_9BACL GTP-binding protein TypA Length = 614 Score = 1061 bits (2745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 517/613 (84%), Positives = 556/613 (90%), Gaps = 3/613 (0%) Query: 1 MHSRKDIRNIAIIAHVDHGKTTLVDQLLQQSGIFSAHEHLQERAMDSNDLERERGITILA 60 M +R++IRNIAIIAHVDHGKTTLVD+LLQQSG F HE +QERAMDSNDLERERGITILA Sbjct: 1 MQARENIRNIAIIAHVDHGKTTLVDKLLQQSGTFREHEAVQERAMDSNDLERERGITILA 60 Query: 61 KNTAITYKEFLINIVDTPGHADFGGEVERIMKMVDGVLLVVDAYEGCMPQTKFVLRKALE 120 KNTAITYK++LINIVDTPGHADFGGEVERIMKMVDGVLLVVDA+EGCMPQTKFVLRKALE Sbjct: 61 KNTAITYKDYLINIVDTPGHADFGGEVERIMKMVDGVLLVVDAFEGCMPQTKFVLRKALE 120 Query: 121 QNLTPIVVVNKIDRPAARPKEVIDEVLDLFIELEANDDQLEFPVVYASALNGTSSMD--P 178 NLTPIVVVNKIDRP ARP EVIDEVLDLFIEL ANDDQLEFPVVYASAL GTSS++ P Sbjct: 121 SNLTPIVVVNKIDRPNARPTEVIDEVLDLFIELGANDDQLEFPVVYASALMGTSSLESEP 180 Query: 179 EKQDDNMLALYETITEHIPAPTEKVDEPLQFLVTLMDYNEYLGRIAIGRVNRGVIKQGQS 238 EKQ+DNM ALYETI HIP PTE VDEPLQFLVTL+DYNEYLGRIA+GRVNRG+++QGQ+ Sbjct: 181 EKQEDNMQALYETIVSHIPHPTETVDEPLQFLVTLLDYNEYLGRIAVGRVNRGIVRQGQT 240 Query: 239 VTVIMRDGKSKTARIEKLFGFQGLKRVETEEXXXXXXXXXXXXXXXNIGETIADPQNPEA 298 V VI R+G K ARIEKLFGFQGLKRVE EE NIGETIADP PEA Sbjct: 241 VAVINREGAVKQARIEKLFGFQGLKRVEIEEAGAGDIVAIAGIKDINIGETIADPSKPEA 300 Query: 299 LPVLKIDEPTMQMTFLVNNSPFAGKEGKWVTSRKLRERLFKELETDVSLRVLETDSPDAF 358 LPVLKIDEPT+QMTFLVNNSPFAG+EGKWVTSRK+RERLFKELETDV+LRV ETDSPDAF Sbjct: 301 LPVLKIDEPTLQMTFLVNNSPFAGREGKWVTSRKIRERLFKELETDVALRVDETDSPDAF 360 Query: 359 IVSGRGELHLGILIENMRREGYEMQVSKPEVIVKEIDGVKMEPLERLMIDIPEESMGAVM 418 IVSGRGELHLGILIENMRREG+E+QVSKPEVI+KE+DGVK EP ERL+ID+PE+SMGAVM Sbjct: 361 IVSGRGELHLGILIENMRREGFEIQVSKPEVIIKEVDGVKSEPYERLLIDVPEDSMGAVM 420 Query: 419 ESLGTRKAEMVNMINHGTGQVRLEFLIPARGLIGYNTYFLTLTRGYGVMNHAFDSYAPLI 478 ESLGTRKAEMVNMIN+G GQVRLEF+IPARGLIGY T FLTLTRGYG+MNHAFDSY PL Sbjct: 421 ESLGTRKAEMVNMINNGNGQVRLEFIIPARGLIGYRTSFLTLTRGYGIMNHAFDSYGPLA 480 Query: 479 GGQVGGRHQGVLVSSETGTTTFYGMMGVEDRGILFLEPGTEIYEGMIVGEHTRDNDIIVN 538 G VGGRHQGVLVSSETGT+TFYGM+GVEDRGI F+EPGTEIYEGMIVGEHTRDNDIIVN Sbjct: 481 SG-VGGRHQGVLVSSETGTSTFYGMLGVEDRGIQFVEPGTEIYEGMIVGEHTRDNDIIVN 539 Query: 539 ICKEKALTNVRSATKDETVKMKTPRLFSLEGALEYLNDDEYCEITPKSVRLRKKILNKGE 598 ICKEKALTNVRSA KD+TVK+KTPRLFSLE ALEYLNDDE+CEITPKS+RLRKKILNK E Sbjct: 540 ICKEKALTNVRSAGKDDTVKLKTPRLFSLEQALEYLNDDEFCEITPKSIRLRKKILNKSE 599 Query: 599 RERVEKQRKAAQA 611 RER EK RK AQA Sbjct: 600 RERAEKHRKTAQA 612 >A6CMZ8.1 A6CMZ8_9BACI GTP-binding protein TypA/BipA Length = 614 Score = 906 bits (2341), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/614 (70%), Positives = 519/614 (84%), Gaps = 2/614 (0%) Query: 1 MHSRKDIRNIAIIAHVDHGKTTLVDQLLQQSGIFSAHEHLQERAMDSNDLERERGITILA 60 M+ R D+RNIAIIAHVDHGKTTLVD+LL+QSGIF +EH++ERAMDSNDLERERGITILA Sbjct: 1 MNLRNDLRNIAIIAHVDHGKTTLVDELLKQSGIFRTNEHVEERAMDSNDLERERGITILA 60 Query: 61 KNTAITYKEFLINIVDTPGHADFGGEVERIMKMVDGVLLVVDAYEGCMPQTKFVLRKALE 120 KNTAI YK+ INI+DTPGHADFGGEVERIMKMVDGVLLVVDAYEGCMPQT+FVL+KALE Sbjct: 61 KNTAIQYKDTRINILDTPGHADFGGEVERIMKMVDGVLLVVDAYEGCMPQTRFVLKKALE 120 Query: 121 QNLTPIVVVNKIDRPAARPKEVIDEVLDLFIELEANDDQLEFPVVYASALNGTSSMDPE- 179 QNLTPIVVVNKID+ +ARP+EVIDEVL+LFIEL+AN+DQLEFPVVYASA+NGT+S DP+ Sbjct: 121 QNLTPIVVVNKIDKDSARPEEVIDEVLELFIELDANEDQLEFPVVYASAINGTASTDPDP 180 Query: 180 -KQDDNMLALYETITEHIPAPTEKVDEPLQFLVTLMDYNEYLGRIAIGRVNRGVIKQGQS 238 QD+NM LYE++ EHIPAP + +EPLQF V L+DYN+Y+GRI IGRV RG +K GQ Sbjct: 181 ANQDENMQCLYESVIEHIPAPIDNREEPLQFQVALLDYNDYVGRIGIGRVFRGTMKVGQQ 240 Query: 239 VTVIMRDGKSKTARIEKLFGFQGLKRVETEEXXXXXXXXXXXXXXXNIGETIADPQNPEA 298 V ++ DG K R+ K+FGF GLKRVE +E N+GET+ + + Sbjct: 241 VALMKIDGSVKNFRVTKIFGFMGLKRVEIQEAHAGDLIAVSGMEDINVGETVCPIDHQDQ 300 Query: 299 LPVLKIDEPTMQMTFLVNNSPFAGKEGKWVTSRKLRERLFKELETDVSLRVLETDSPDAF 358 LPVL+IDEPT+QMTFLVNNSPFAG+EGK+VTSRK+ ERL +L+TDVSLRV TDSPDA+ Sbjct: 301 LPVLRIDEPTLQMTFLVNNSPFAGREGKYVTSRKIEERLLAQLQTDVSLRVENTDSPDAW 360 Query: 359 IVSGRGELHLGILIENMRREGYEMQVSKPEVIVKEIDGVKMEPLERLMIDIPEESMGAVM 418 VSGRGELHL ILIENMRREG+E+QVSKPEVIV+EIDGVK EP+ER+ ID+PEE G+++ Sbjct: 361 TVSGRGELHLSILIENMRREGFELQVSKPEVIVREIDGVKCEPVERVQIDVPEEYTGSII 420 Query: 419 ESLGTRKAEMVNMINHGTGQVRLEFLIPARGLIGYNTYFLTLTRGYGVMNHAFDSYAPLI 478 ES+GTRK EM++MIN+G+GQVRL F++PARGLIGY+T F+TLTRGYG++NH FDSY P+ Sbjct: 421 ESMGTRKGEMLDMINNGSGQVRLIFMVPARGLIGYSTEFMTLTRGYGIINHTFDSYQPMQ 480 Query: 479 GGQVGGRHQGVLVSSETGTTTFYGMMGVEDRGILFLEPGTEIYEGMIVGEHTRDNDIIVN 538 GQVGGR QGV+VS ETG ++ YG+MGVEDRG +F+EPGTEIY GMIVGEHTR+NDI VN Sbjct: 481 KGQVGGRRQGVIVSMETGKSSQYGIMGVEDRGTIFVEPGTEIYAGMIVGEHTRENDITVN 540 Query: 539 ICKEKALTNVRSATKDETVKMKTPRLFSLEGALEYLNDDEYCEITPKSVRLRKKILNKGE 598 I K K TNVRSA KD+TV +K R+ +LE +LEYLNDDEYCE+TP+S+RLRKKIL+K E Sbjct: 541 ITKTKQATNVRSANKDQTVTIKKARIMTLEESLEYLNDDEYCEVTPESIRLRKKILDKNE 600 Query: 599 RERVEKQRKAAQAS 612 RERV K++K A+ + Sbjct: 601 RERVTKKKKVAETN 614 >Q2B4W6.1 Q2B4W6_9BACI GTP-binding protein Length = 612 Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/612 (70%), Positives = 514/612 (83%) Query: 1 MHSRKDIRNIAIIAHVDHGKTTLVDQLLQQSGIFSAHEHLQERAMDSNDLERERGITILA 60 M R+D+RNIAIIAHVDHGKTTLVDQLL+QSG F +EH++ERAMDSNDLERERGITILA Sbjct: 1 MKIREDLRNIAIIAHVDHGKTTLVDQLLKQSGTFRTNEHVEERAMDSNDLERERGITILA 60 Query: 61 KNTAITYKEFLINIVDTPGHADFGGEVERIMKMVDGVLLVVDAYEGCMPQTKFVLRKALE 120 KNTAI YK+ INI+DTPGHADFGGEVERIMKMVDGVLLVVDAYEGCMPQT+FVL+KALE Sbjct: 61 KNTAIQYKDTRINILDTPGHADFGGEVERIMKMVDGVLLVVDAYEGCMPQTRFVLKKALE 120 Query: 121 QNLTPIVVVNKIDRPAARPKEVIDEVLDLFIELEANDDQLEFPVVYASALNGTSSMDPEK 180 QNLTPIVVVNKIDR ARP EVIDEVLDLFIEL+AN++QLEFPV+YASA+NGT+S DPEK Sbjct: 121 QNLTPIVVVNKIDRDFARPAEVIDEVLDLFIELDANEEQLEFPVIYASAINGTASTDPEK 180 Query: 181 QDDNMLALYETITEHIPAPTEKVDEPLQFLVTLMDYNEYLGRIAIGRVNRGVIKQGQSVT 240 QD+NM +LY+ I +HIPAP + +E LQF V L+DYN+Y+GRI IGRV RG ++ GQ V Sbjct: 181 QDENMQSLYDAIVDHIPAPVDNSEEHLQFQVALLDYNDYVGRIGIGRVFRGTMQVGQQVA 240 Query: 241 VIMRDGKSKTARIEKLFGFQGLKRVETEEXXXXXXXXXXXXXXXNIGETIADPQNPEALP 300 ++ DG K R+ K+FGF GLKR E +E N+GET+ ++ EALP Sbjct: 241 LMKLDGSVKQFRVSKIFGFFGLKRQEIQEAKAGDLIAVSGMEDINVGETVTPVEHQEALP 300 Query: 301 VLKIDEPTMQMTFLVNNSPFAGKEGKWVTSRKLRERLFKELETDVSLRVLETDSPDAFIV 360 VL+IDEPT+QMTFLVNNSPFAG+EGK+VTSRK+ ERL +L+TDVSLRV T+SPDA++V Sbjct: 301 VLRIDEPTLQMTFLVNNSPFAGREGKFVTSRKIEERLRAQLQTDVSLRVENTESPDAWVV 360 Query: 361 SGRGELHLGILIENMRREGYEMQVSKPEVIVKEIDGVKMEPLERLMIDIPEESMGAVMES 420 SGRGELHL ILIENMRREGYE+QVSKPEVIVK IDGV+ EP+ER+ ID+PEE G++MES Sbjct: 361 SGRGELHLSILIENMRREGYELQVSKPEVIVKVIDGVRCEPVERVQIDVPEEHTGSIMES 420 Query: 421 LGTRKAEMVNMINHGTGQVRLEFLIPARGLIGYNTYFLTLTRGYGVMNHAFDSYAPLIGG 480 +G RK EM++MIN+G+GQVRL F +PARGLIGY T FLTLTRGYG++NH+FDSY P+ G Sbjct: 421 IGARKGEMLDMINNGSGQVRLIFNVPARGLIGYTTEFLTLTRGYGIINHSFDSYQPMAQG 480 Query: 481 QVGGRHQGVLVSSETGTTTFYGMMGVEDRGILFLEPGTEIYEGMIVGEHTRDNDIIVNIC 540 QVGGR QGVLVS E+G + YG+M VEDRGI+FLE GTEIYEGMIVGEHTR+NDI VNI Sbjct: 481 QVGGRRQGVLVSMESGKASTYGIMQVEDRGIIFLEAGTEIYEGMIVGEHTRENDITVNIT 540 Query: 541 KEKALTNVRSATKDETVKMKTPRLFSLEGALEYLNDDEYCEITPKSVRLRKKILNKGERE 600 K K TN+RSA KD+T MK PR+ +LE ALEYLNDDEYCE+TP+S+RLRKKIL+K ERE Sbjct: 541 KVKQATNIRSANKDQTATMKKPRIMTLEEALEYLNDDEYCEVTPESIRLRKKILDKNERE 600 Query: 601 RVEKQRKAAQAS 612 R+ K++K A+ + Sbjct: 601 RIAKKKKYAETN 612 >A7GRY4.1 A7GRY4_BACCN GTP-binding protein TypA Length = 614 Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/613 (69%), Positives = 513/613 (83%), Gaps = 2/613 (0%) Query: 1 MHSRKDIRNIAIIAHVDHGKTTLVDQLLQQSGIFSAHEHLQERAMDSNDLERERGITILA 60 + R+D+RNIAIIAHVDHGKTTLVDQLL+Q+G F A+EH++ERAMDSNDLERERGITILA Sbjct: 2 LKKRQDLRNIAIIAHVDHGKTTLVDQLLRQAGTFRANEHVEERAMDSNDLERERGITILA 61 Query: 61 KNTAITYKEFLINIVDTPGHADFGGEVERIMKMVDGVLLVVDAYEGCMPQTKFVLRKALE 120 KNTAI Y + INI+DTPGHADFGGEVERIM+MVDGVLLVVDAYEGCMPQT+FVL+KALE Sbjct: 62 KNTAIHYGDKRINILDTPGHADFGGEVERIMRMVDGVLLVVDAYEGCMPQTRFVLKKALE 121 Query: 121 QNLTPIVVVNKIDRPAARPKEVIDEVLDLFIELEANDDQLEFPVVYASALNGTSSMDPE- 179 QNLTPIVVVNKIDR ARP+EV+DEVLDLFIEL AN+DQLEFPVV+ASA+NGT+S+DP Sbjct: 122 QNLTPIVVVNKIDRDFARPEEVVDEVLDLFIELGANEDQLEFPVVFASAMNGTASLDPNP 181 Query: 180 -KQDDNMLALYETITEHIPAPTEKVDEPLQFLVTLMDYNEYLGRIAIGRVNRGVIKQGQS 238 Q++NM +L+ETI HIPAP + DEPLQF V L+DYN+Y+GRI +GRV RG +K GQ Sbjct: 182 ANQEENMKSLFETIINHIPAPIDNSDEPLQFQVALLDYNDYVGRIGVGRVFRGTMKVGQQ 241 Query: 239 VTVIMRDGKSKTARIEKLFGFQGLKRVETEEXXXXXXXXXXXXXXXNIGETIADPQNPEA 298 V ++ DG K R+ K+FG+ GLKR E EE N+GET+ + EA Sbjct: 242 VALMKVDGSVKQFRVTKIFGYMGLKRQEIEEAKAGDLVAVSGMEDINVGETVCPIDHQEA 301 Query: 299 LPVLKIDEPTMQMTFLVNNSPFAGKEGKWVTSRKLRERLFKELETDVSLRVLETDSPDAF 358 LP+L+IDEPT+QMTFLVNNSPFAG+EGK++TSRK+ ERL +LETDVSLRV TDSPDA+ Sbjct: 302 LPLLRIDEPTLQMTFLVNNSPFAGREGKYITSRKIEERLRSQLETDVSLRVENTDSPDAW 361 Query: 359 IVSGRGELHLGILIENMRREGYEMQVSKPEVIVKEIDGVKMEPLERLMIDIPEESMGAVM 418 IVSGRGELHL ILIENMRREGYE+QVSKPEVI+KEIDGV+ EP+ER+ ID+PEE G++M Sbjct: 362 IVSGRGELHLSILIENMRREGYELQVSKPEVIIKEIDGVRCEPVERVQIDVPEEYTGSIM 421 Query: 419 ESLGTRKAEMVNMINHGTGQVRLEFLIPARGLIGYNTYFLTLTRGYGVMNHAFDSYAPLI 478 ES+G RK EM++M+N+G GQVRL F++PARGLIGY T FLTLTRGYG++NH FDSY P+ Sbjct: 422 ESMGARKGEMLDMVNNGNGQVRLTFMVPARGLIGYTTEFLTLTRGYGILNHTFDSYQPVH 481 Query: 479 GGQVGGRHQGVLVSSETGTTTFYGMMGVEDRGILFLEPGTEIYEGMIVGEHTRDNDIIVN 538 GQVGGR QGVLVS ETG + YG+M VEDRG++F+EPGTE+Y GMIVGEHTR+ND+ VN Sbjct: 482 AGQVGGRRQGVLVSLETGKASQYGIMQVEDRGVIFVEPGTEVYTGMIVGEHTRENDLTVN 541 Query: 539 ICKEKALTNVRSATKDETVKMKTPRLFSLEGALEYLNDDEYCEITPKSVRLRKKILNKGE 598 I K K TN+RSATKD+T MK PR+ +LE +LEYLNDDEYCE+TP+S+RLRKKIL+K E Sbjct: 542 IVKMKQQTNIRSATKDQTSTMKKPRIMTLEESLEYLNDDEYCEVTPESIRLRKKILDKNE 601 Query: 599 RERVEKQRKAAQA 611 RE+ K++K+ +A Sbjct: 602 REKAAKRKKSVEA 614 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,476,544,154 Number of extensions: 147692494 Number of successful extensions: 469112 Number of sequences better than 1.0e-05: 14568 Number of HSP's gapped: 445714 Number of HSP's successfully gapped: 15818 Length of query: 614 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 472 Effective length of database: 1,722,912,073 Effective search space: 813214498456 Effective search space used: 813214498456 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)