BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0172.0005.p
         (88 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KG61.1 B3KG61_9BACI Putative uncharacterized protein                112   8e-24
B1DBV5.1 B1DBV5_9BACL Putative uncharacterized protein                 70   7e-11

>B3KG61.1 B3KG61_9BACI Putative uncharacterized protein
          Length = 97

 Score =  112 bits (281), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 67/74 (90%)

Query: 1  VAYIVIFILLTYVYNRVFRVNQKLLIGKEIVLYVMMALGSGMLLIFQHDKLPIIQCLLVA 60
          V+YIVIF+L+TYVYN+VFRV QKL + KEI+LY++MALGS +LL+FQ DKLPIIQCLLVA
Sbjct: 11 VSYIVIFVLITYVYNKVFRVKQKLPLLKEILLYILMALGSAILLVFQIDKLPIIQCLLVA 70

Query: 61 VGLMLLVRVRYMVE 74
          V LML+VR+RY VE
Sbjct: 71 VALMLMVRIRYFVE 84


>B1DBV5.1 B1DBV5_9BACL Putative uncharacterized protein
          Length = 104

 Score = 70.1 bits (170), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 56/71 (78%), Gaps = 1/71 (1%)

Query: 1  VAYIVIFILLTYVYNRVFRVN-QKLLIGKEIVLYVMMALGSGMLLIFQHDKLPIIQCLLV 59
          V+Y++I     Y++N+VFR N QKL I KE+++Y++MA+GS +L++ Q DKLPIIQC+ +
Sbjct: 11 VSYLLILGFTIYIFNKVFRANNQKLPILKEVLVYILMAVGSFVLMVLQVDKLPIIQCMGI 70

Query: 60 AVGLMLLVRVR 70
          AV +ML++R R
Sbjct: 71 AVLMMLMLRGR 81


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.340    0.154    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 358,141,519
Number of extensions: 11374206
Number of successful extensions: 78416
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 78415
Number of HSP's successfully gapped: 2
Length of query: 88
Length of database: 3,060,696,203
Length adjustment: 58
Effective length of query: 30
Effective length of database: 2,514,277,333
Effective search space: 75428319990
Effective search space used: 75428319990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 125 (52.8 bits)