BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0172.0001.p (455 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG65.1 B3KG65_9BACI PhoH family protein 730 0.0 B1DBW0.1 B1DBW0_9BACL PhoH family protein 682 0.0 C0ZGE3.1 C0ZGE3_BREBN Putative uncharacterized protein 590 e-166 C1P7G5.1 C1P7G5_BACCO PhoH family protein 559 e-157 Q4MTD8.1 Q4MTD8_BACCE PhoH family protein CP0668 548 e-154 >B3KG65.1 B3KG65_9BACI PhoH family protein Length = 443 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/443 (80%), Positives = 392/443 (88%) Query: 13 MKKIFVLDTNVLLHDPNSIFAFKEHEVVIPAVVLEEIDSKKRNADEIGRNARTVSRLLDG 72 MKKIFVLDTNVLLHDP SI+AF+EHEV+IPAVVLEEIDSKKRN DEIGRNAR VSRLLDG Sbjct: 1 MKKIFVLDTNVLLHDPQSIYAFEEHEVIIPAVVLEEIDSKKRNVDEIGRNARMVSRLLDG 60 Query: 73 LRELGHLHSGVVLEHGGTLKVELNHRSFVKVQEMFGEVSNDNRILAVALNYLHEENEKAE 132 +RE GHLH GV+LE+GGTLKVELNHRSFVKVQE+F E SNDNRILAVALNY EE K + Sbjct: 61 IREQGHLHDGVLLENGGTLKVELNHRSFVKVQELFSEASNDNRILAVALNYKLEEEPKED 120 Query: 133 PRPVVLVSKDVLVRIKADVLGITPEDYLSDRTGDLNELYAGYQSLMVHPSLIDEYYSHRS 192 RPVVLVSKDVLVRIKADVLG+T +DYL+DRT D +ELY G+ ++ VHPS+IDE+YS+R Sbjct: 121 GRPVVLVSKDVLVRIKADVLGLTTQDYLTDRTADPSELYPGFSTIKVHPSVIDEFYSYRY 180 Query: 193 LSVKQLALSYPLYPHEFVIMKDEIGTGKSALLKVNSDASRLEPLYLGNDAVWGISARNAQ 252 L +K L LSYPLYPHEFVI+KDE+G+GKSALL VN DA+RLEPL+L N+ VWGISARNAQ Sbjct: 181 LPIKPLQLSYPLYPHEFVILKDEMGSGKSALLHVNEDATRLEPLHLSNEPVWGISARNAQ 240 Query: 253 QRMALELLLNDDIPLVXXXXXXXXXXXXXXXXXXXFKVEDEHKYKKLLIARPVVPMGKDI 312 QRMA+ELLLNDDIPLV KVEDEHKYKKLLIARPVVPMGKDI Sbjct: 241 QRMAIELLLNDDIPLVTITGKAGTGKTLLALAAGLSKVEDEHKYKKLLIARPVVPMGKDI 300 Query: 313 GYLPGEKDEKLRPWMQPIYDNLEFLFDTKKSGDIDKILMGLGSIQVEALTYIRGRSIPSQ 372 GYLPGEK+EKLRPWMQPIYDNLE+LFDTKKSGDIDKILMGLGSIQVEALTYIRGRSIP Q Sbjct: 301 GYLPGEKEEKLRPWMQPIYDNLEYLFDTKKSGDIDKILMGLGSIQVEALTYIRGRSIPGQ 360 Query: 373 FIIIDEAQNLSRHEVKTIVSRAGEGSKVILMGDPEQIDHPYLDAASNGLSYIVEKFKQQG 432 FII+DEAQNLSRHEVKTIVSRAGEGSKVILMGDPEQIDHPYLDA SNGL+Y+VE+FKQ+G Sbjct: 361 FIIVDEAQNLSRHEVKTIVSRAGEGSKVILMGDPEQIDHPYLDAVSNGLTYVVERFKQEG 420 Query: 433 ISGHITLEKGERSHLAQLAADLL 455 +SGHITL KGERS LAQLAADLL Sbjct: 421 LSGHITLTKGERSKLAQLAADLL 443 >B1DBW0.1 B1DBW0_9BACL PhoH family protein Length = 443 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/443 (75%), Positives = 379/443 (85%) Query: 13 MKKIFVLDTNVLLHDPNSIFAFKEHEVVIPAVVLEEIDSKKRNADEIGRNARTVSRLLDG 72 MKKIFVLDTNVLLHDP S+FAF+++EV+IPAVVLEEIDSKKR ADE+GRNAR++SRLLDG Sbjct: 1 MKKIFVLDTNVLLHDPQSLFAFEDNEVIIPAVVLEEIDSKKRLADELGRNARSISRLLDG 60 Query: 73 LRELGHLHSGVVLEHGGTLKVELNHRSFVKVQEMFGEVSNDNRILAVALNYLHEENEKAE 132 +R GHLH G+ L +GG LKVELNHRSF++VQEMFGE++NDNRILAVALNY E+ E + Sbjct: 61 MRVEGHLHEGITLPNGGLLKVELNHRSFMRVQEMFGEMTNDNRILAVALNYHLEQLENEQ 120 Query: 133 PRPVVLVSKDVLVRIKADVLGITPEDYLSDRTGDLNELYAGYQSLMVHPSLIDEYYSHRS 192 VVLVSKDVLVRIKADVLG+ +DYLSDRT + YAGY++L VHPS+IDE+Y++R Sbjct: 121 TSTVVLVSKDVLVRIKADVLGLEAQDYLSDRTVSTTDFYAGYETLFVHPSVIDEFYTYRF 180 Query: 193 LSVKQLALSYPLYPHEFVIMKDEIGTGKSALLKVNSDASRLEPLYLGNDAVWGISARNAQ 252 L+VK + L P+EFVI++DE+GT KSALLKV+ D RLEPL+L ND +WGI+ARNAQ Sbjct: 181 LTVKSMQNIARLKPNEFVILRDEMGTSKSALLKVSQDGVRLEPLFLSNDPIWGITARNAQ 240 Query: 253 QRMALELLLNDDIPLVXXXXXXXXXXXXXXXXXXXFKVEDEHKYKKLLIARPVVPMGKDI 312 QRMALELLLND+IPLV KVEDEHKYKKLLIARPVVPMGKDI Sbjct: 241 QRMALELLLNDEIPLVTLTGKAGTGKTLLALAAGLLKVEDEHKYKKLLIARPVVPMGKDI 300 Query: 313 GYLPGEKDEKLRPWMQPIYDNLEFLFDTKKSGDIDKILMGLGSIQVEALTYIRGRSIPSQ 372 GYLPGEK+EKLRPWMQPIYDNLE+LFDTKKSGDIDKILMGLGSIQVEALTYIRGRSIP Q Sbjct: 301 GYLPGEKEEKLRPWMQPIYDNLEYLFDTKKSGDIDKILMGLGSIQVEALTYIRGRSIPGQ 360 Query: 373 FIIIDEAQNLSRHEVKTIVSRAGEGSKVILMGDPEQIDHPYLDAASNGLSYIVEKFKQQG 432 FIIIDEAQNL++HEVKTIVSR GEGSK++LMGDPEQIDHPYLDA SNGL++IVE FK +G Sbjct: 361 FIIIDEAQNLTKHEVKTIVSRVGEGSKIVLMGDPEQIDHPYLDAVSNGLTHIVEHFKSEG 420 Query: 433 ISGHITLEKGERSHLAQLAADLL 455 ISGHITLEKGERS LAQLAADLL Sbjct: 421 ISGHITLEKGERSKLAQLAADLL 443 >C0ZGE3.1 C0ZGE3_BREBN Putative uncharacterized protein Length = 444 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 283/444 (63%), Positives = 345/444 (77%), Gaps = 1/444 (0%) Query: 13 MKKIFVLDTNVLLHDPNSIFAFKEHEVVIPAVVLEEIDSKKRNADEIGRNARTVSRLLDG 72 MKKI+VLDTNVLL DP ++F+F ++E+VIPAVVLEEIDSKKR DEIGRNAR VSRL D Sbjct: 1 MKKIYVLDTNVLLQDPRAMFSFADNEIVIPAVVLEEIDSKKRYMDEIGRNARYVSRLFDS 60 Query: 73 LRELGHLHSGVVLEHGGTLKVELNHRSFVKVQEMFGEVSNDNRILAVALNYLHEENEKAE 132 RELG LH+G+ LE GG +VELNH SF ++Q+ F E+SNDNRILAVALN EEN K + Sbjct: 61 FRELGQLHTGITLETGGLFRVELNHSSFHRLQKQFTEMSNDNRILAVALNLQEEENGKPQ 120 Query: 133 PRPVVLVSKDVLVRIKADVLGITPEDYLSDRT-GDLNELYAGYQSLMVHPSLIDEYYSHR 191 PRPV+LVSKD L+R+KAD L I+ ED+LSDR G+ + +Y GYQ +MV +I YY+ + Sbjct: 121 PRPVILVSKDALMRVKADALNISAEDFLSDRVVGEFSSIYPGYQKMMVASDIIKNYYATK 180 Query: 192 SLSVKQLALSYPLYPHEFVIMKDEIGTGKSALLKVNSDASRLEPLYLGNDAVWGISARNA 251 L + Y YPH+F+++KDE SA+ KV+ D LE L +D +WGI ARN Sbjct: 181 KLQLASCFPRYRFYPHQFLVLKDECNPSISAIGKVDPDGKMLEMLVSDDDPIWGIRARNV 240 Query: 252 QQRMALELLLNDDIPLVXXXXXXXXXXXXXXXXXXXFKVEDEHKYKKLLIARPVVPMGKD 311 QQRMA ELLL DDIPLV ++ED+ KYKKLL+ARP+VP+GKD Sbjct: 241 QQRMATELLLRDDIPLVTMTGKAGTGKTLLALAAGLLQIEDQQKYKKLLVARPIVPLGKD 300 Query: 312 IGYLPGEKDEKLRPWMQPIYDNLEFLFDTKKSGDIDKILMGLGSIQVEALTYIRGRSIPS 371 IGYLPGEK+EKLRPWMQPIYDNLE+LF+TK+ GD+DKIL G+GS+QVEALTYIRGRSIP Sbjct: 301 IGYLPGEKEEKLRPWMQPIYDNLEYLFNTKRPGDLDKILAGMGSLQVEALTYIRGRSIPE 360 Query: 372 QFIIIDEAQNLSRHEVKTIVSRAGEGSKVILMGDPEQIDHPYLDAASNGLSYIVEKFKQQ 431 QFIIIDEAQNL++HEVKTI++R G+GSK++LMGDPEQIDHPYLD ++NGL+Y+VE FK Q Sbjct: 361 QFIIIDEAQNLTKHEVKTILTRVGDGSKIVLMGDPEQIDHPYLDESNNGLTYVVEVFKDQ 420 Query: 432 GISGHITLEKGERSHLAQLAADLL 455 ++GHI LEKGERS LAQLAADLL Sbjct: 421 KLAGHIQLEKGERSVLAQLAADLL 444 >C1P7G5.1 C1P7G5_BACCO PhoH family protein Length = 442 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 271/443 (61%), Positives = 340/443 (76%), Gaps = 1/443 (0%) Query: 13 MKKIFVLDTNVLLHDPNSIFAFKEHEVVIPAVVLEEIDSKKRNADEIGRNARTVSRLLDG 72 MKKI+VLDTNVLL DP +IF+F+++E+VIPAVVLEE+DSKKRN DEIGRNAR VS+L+DG Sbjct: 1 MKKIYVLDTNVLLQDPYAIFSFEDNEIVIPAVVLEEVDSKKRNMDEIGRNARQVSKLMDG 60 Query: 73 LRELGHLHSGVVLEHGGTLKVELNHRSFVKVQEMFGEVSNDNRILAVALNYLHEENEKAE 132 R+ G LH + LE+GG L++ELNHRSF ++Q++F E +NDNRILAVA N EE K Sbjct: 61 FRQAGKLHEKIPLENGGVLRIELNHRSFHQLQDIFVEKTNDNRILAVAKNLSLEEERKEN 120 Query: 133 PRPVVLVSKDVLVRIKADVLGITPEDYLSDRTGDLNELYAGYQSLMVHPSLIDEYYSHRS 192 RPV+LVSKD LVR+KAD LG+ ED+L+DR L+ LY G + + P L+ +Y + Sbjct: 121 GRPVILVSKDALVRVKADALGLLAEDFLNDRVVSLDHLYTGQMEMYISPDLLKRFYEKQE 180 Query: 193 LSVKQLALSYPLYPHEFVIMKDEIGTGKSALLKVNSDASRLEPLYLGNDAVWGISARNAQ 252 LS+ ++A ++P YP++F+I+KD +G+ SA+ V+ + L+ DAVWGI RNAQ Sbjct: 181 LSLSEIA-NHPFYPNQFLILKDALGSSASAIAIVDQAGKTAKKLFHVQDAVWGIKPRNAQ 239 Query: 253 QRMALELLLNDDIPLVXXXXXXXXXXXXXXXXXXXFKVEDEHKYKKLLIARPVVPMGKDI 312 Q MA+ELLL DIPLV + ED H YKKLL+ARP+VP GKDI Sbjct: 240 QWMAMELLLRPDIPLVTLTGKAGTGKTLLALAAGLMQTEDLHDYKKLLVARPIVPFGKDI 299 Query: 313 GYLPGEKDEKLRPWMQPIYDNLEFLFDTKKSGDIDKILMGLGSIQVEALTYIRGRSIPSQ 372 GYLPGEK+EKLRPWMQPIYDNLEFLF+TKK+G+ID IL G+ SI+VEALTYIRGRSIP Q Sbjct: 300 GYLPGEKEEKLRPWMQPIYDNLEFLFNTKKAGEIDGILSGMSSIEVEALTYIRGRSIPEQ 359 Query: 373 FIIIDEAQNLSRHEVKTIVSRAGEGSKVILMGDPEQIDHPYLDAASNGLSYIVEKFKQQG 432 +IIIDEAQNLS+HEVKTI++R GE SK++LMGDPEQIDHPYLDA +NGL+Y+VEKFK Sbjct: 360 YIIIDEAQNLSKHEVKTILTRVGEQSKIVLMGDPEQIDHPYLDAYNNGLTYVVEKFKDVP 419 Query: 433 ISGHITLEKGERSHLAQLAADLL 455 ++GH+ L KGERS LAQ+AADLL Sbjct: 420 LAGHVQLLKGERSKLAQIAADLL 442 >Q4MTD8.1 Q4MTD8_BACCE PhoH family protein CP0668 Length = 449 Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust. Identities = 267/448 (59%), Positives = 342/448 (76%), Gaps = 1/448 (0%) Query: 8 CGGDNMKKIFVLDTNVLLHDPNSIFAFKEHEVVIPAVVLEEIDSKKRNADEIGRNARTVS 67 GG+ + KI+VLDTNVLL DP SIF+F+ +EVVIPAVVLEE+DSKKR DE+GRNAR VS Sbjct: 3 SGGNRLDKIYVLDTNVLLQDPLSIFSFETNEVVIPAVVLEEVDSKKRYMDEVGRNARYVS 62 Query: 68 RLLDGLRELGHLHSGVVLEHGGTLKVELNHRSFVKVQEMFGEVSNDNRILAVALNYLHEE 127 +L+D RE+G LH + LE+GGT ++ELNHRSFV++Q++F E +NDNRILAVA N EE Sbjct: 63 KLIDKFREIGKLHESIPLENGGTFRIELNHRSFVQLQDIFVEKTNDNRILAVAKNLSLEE 122 Query: 128 NEKAEPRPVVLVSKDVLVRIKADVLGITPEDYLSDRTGDLNELYAGYQSLMVHPSLIDEY 187 EK + + V+LVSKDVLVR+KAD +G+ EDYLSDR +++ +Y+G+ + +D + Sbjct: 123 QEKEDGKSVILVSKDVLVRVKADAIGLKAEDYLSDRVIEVDNIYSGFLEGYISKEQLDYF 182 Query: 188 YSHRSLSVKQLALSYPLYPHEFVIMKDEIGTGKSALLKVNSDASRLEPLYLGNDAVWGIS 247 Y L + ++A ++P YP++FV+MKD +G SAL V+ +++ L N+ VWGI Sbjct: 183 YEKGELPLSEIA-NHPFYPNQFVVMKDALGGSSSALGIVDHLGKKVKKLIFHNEQVWGIR 241 Query: 248 ARNAQQRMALELLLNDDIPLVXXXXXXXXXXXXXXXXXXXFKVEDEHKYKKLLIARPVVP 307 RN QQ M LELLL +DIPLV + ED YKKLL+ARP+VP Sbjct: 242 PRNVQQIMGLELLLREDIPLVTLTGKAGTGKTLLALASGLMQTEDLGLYKKLLVARPIVP 301 Query: 308 MGKDIGYLPGEKDEKLRPWMQPIYDNLEFLFDTKKSGDIDKILMGLGSIQVEALTYIRGR 367 +GKDIGYLPGEK+EKLRPWMQPI+DNLE+LF+TKK G++D IL G+GSI+VEALTYIRGR Sbjct: 302 VGKDIGYLPGEKEEKLRPWMQPIFDNLEYLFNTKKPGELDAILAGMGSIEVEALTYIRGR 361 Query: 368 SIPSQFIIIDEAQNLSRHEVKTIVSRAGEGSKVILMGDPEQIDHPYLDAASNGLSYIVEK 427 SIP QFIIIDEAQNL++HEVKTI++R GE SK++LMGDP+QIDHPYLD +NGL+Y+VEK Sbjct: 362 SIPDQFIIIDEAQNLTKHEVKTILTRVGEKSKIVLMGDPQQIDHPYLDEYNNGLTYVVEK 421 Query: 428 FKQQGISGHITLEKGERSHLAQLAADLL 455 FK+Q ISGH+ KGERS+LAQLAADLL Sbjct: 422 FKEQRISGHVKFVKGERSNLAQLAADLL 449 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,573,347,326 Number of extensions: 104837957 Number of successful extensions: 281713 Number of sequences better than 1.0e-05: 1976 Number of HSP's gapped: 278003 Number of HSP's successfully gapped: 2011 Length of query: 455 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 316 Effective length of database: 1,751,175,118 Effective search space: 553371337288 Effective search space used: 553371337288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)