BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0171.0010.p (346 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7A5.1 B3K7A5_9BACI Acyltransferase 3 146 2e-33 Q8EM29.1 Q8EM29_OCEIH Hypothetical conserved protein 145 7e-33 Q2B5J8.1 Q2B5J8_9BACI Putative uncharacterized protein 143 2e-32 Q721H1.1 Q721H1_LISMF Putative membrane protein 134 2e-29 Q5KZT9.1 Q5KZT9_GEOKA Hypothetical conserved protein 124 1e-26 >B3K7A5.1 B3K7A5_9BACI Acyltransferase 3 Length = 348 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/272 (33%), Positives = 139/272 (51%), Gaps = 3/272 (1%) Query: 12 ETFFLNLRFMLIVTVFAGNAIEPLIQSLSGMHSLYLWIFSFHMPLFVLVTGYFAGKSLTG 71 + +F NL+F+LI+ V G+ IEP + M ++Y +I+SFHMPLF+ GYFA + Sbjct: 5 DAYFDNLKFILILLVVVGHLIEPF-NGEAAMGAIYQFIYSFHMPLFIFAVGYFAKCIQSP 63 Query: 72 AAGRKVLLQIGLQYLIFQTLYSVLDVSVFHAANIHHSFFAPYLLLWFLASHACWRLLMLG 131 +L + + Y IF+TLY++ D + ++F P +LWFL S W++L+ Sbjct: 64 KQYVGLLSGLVVPYFIFETLYTLFDYYMQGLDRFDFTYFYPNWILWFLFSMMLWKMLLPY 123 Query: 132 MGRWSRAAQIIFSVSAGIAVGYLQLDGIWFSISRTFVYLPFFVIGYHFSFEAFVRFYNRY 191 + + F++S I +GY + SISRT +LPFF+IGY F E R Sbjct: 124 LLMLKYPLVVCFAMS--IMLGYSIDVDYYASISRTLYFLPFFLIGYVFKREWLDIIKARP 181 Query: 192 VKIXXXXXXXXXXXXXGTFGSELPPGWLYGSMTYMQLDAPEWYAGVYRLGMYGLQLAASL 251 ++ LP W YG+M Y++ WYAG+YR+ Y + L Sbjct: 182 FQLLSIILLSAGFVLLYVISPILPTNWFYGAMPYLEFGLDSWYAGLYRMITYAFTVIMGL 241 Query: 252 AFLGWVPHRLSRMTDWGRRTLYVFLLHGFVVR 283 L +P + TD G T+YVFLLHGF+V+ Sbjct: 242 CVLSLIPRSDTPFTDRGVNTMYVFLLHGFIVK 273 >Q8EM29.1 Q8EM29_OCEIH Hypothetical conserved protein Length = 336 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 95/273 (34%), Positives = 141/273 (51%), Gaps = 4/273 (1%) Query: 12 ETFFLNLRFMLIVTVFAGNAIEPLIQSLSGMHSLYLWIFSFHMPLFVLVTGYFAGKSLTG 71 FF N + +LI V G+ I+P +G+++LYLWI++FHMP F+L+ G+FA S Sbjct: 4 NAFFDNAKVLLIFLVVFGHMIQPFTSEYAGINTLYLWIYTFHMPAFILLAGFFAKGSGNA 63 Query: 72 AAGRKVLLQIGLQYLIFQTLYSVLDVSVFHAANIHHSFFAPYLLLWFLASHACWRLLMLG 131 K+ ++ + YLIFQ LY++ + + F P+ LWFL S W +L++ Sbjct: 64 GYVWKLAKKLIIPYLIFQILYTIYYFYI-GKPDWQTGVFHPHWSLWFLFSLFSWHILLIV 122 Query: 132 MGRWSRAAQIIFSVSAGIAVGYLQLDGIWFSISRTFVYLPFFVIGYHFSFEAFVRFYNRY 191 + S I +V G+ VGY G FS+SRTFV+ PFF++GY + + + Sbjct: 123 FKKISPLYSISLAVLIGVVVGYFGEIGHTFSLSRTFVFFPFFLVGYWVTEKQMMSVKRNA 182 Query: 192 VKIXXXXXXXXXXXXXGTFGSELPPGWLYGSMTYMQLDAPEWYAGVYRLGMYGLQLAASL 251 VK+ + E GWL S +Y L E Y G+ RL +Y + Sbjct: 183 VKVVSLAVMTVLAIAI-YYMPEFNSGWLLASKSYGDLGM-EQYGGIARLLVYATAAVMVV 240 Query: 252 AFLGWVPHR-LSRMTDWGRRTLYVFLLHGFVVR 283 + L WVP R +T G RTLYV+LLHGF+V+ Sbjct: 241 SVLAWVPKRNFGWLTQLGTRTLYVYLLHGFIVQ 273 >Q2B5J8.1 Q2B5J8_9BACI Putative uncharacterized protein Length = 355 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/274 (33%), Positives = 143/274 (52%), Gaps = 3/274 (1%) Query: 12 ETFFLNLRFMLIVTVFAGNAIEPLIQSLSGMHSLYLWIFSFHMPLFVLVTGYFAGKSLTG 71 + +F N +F+LI V G+ + I+ +++LY I++FHMP F+LV+G+FA Sbjct: 14 DYYFDNAKFILIFFVVFGHLLRSFIEDNETIYTLYKVIYTFHMPAFILVSGFFARGIWKQ 73 Query: 72 AAGRKVLLQIGLQYLIFQTLYSVLDVSVFHAANIHHSFFAPYLLLWFLASHACWRLLMLG 131 +K+ ++ L YLIFQ +YSV +++ + I F P+ LWFL S CW +++L Sbjct: 74 GYVKKIAKKLILPYLIFQAIYSVFYYYLYNKSTISLDPFTPHWSLWFLLSLFCWNIMLLL 133 Query: 132 MGRWSRAAQIIFSVSAGIAVGYLQLDGIWFSISRTFVYLPFFVIGYHFSFEAFVRFYNRY 191 ++ A I ++ G+ +GY + S+SRTFV+ P F+IGY E + Sbjct: 134 FAKFKPAYSIGAAILIGLLIGYADTVSNYLSLSRTFVFFPLFLIGYFLRKEQLYMLFRP- 192 Query: 192 VKIXXXXXXXXXXXXXG-TFGSELPPGWLYGSMTYMQLDAPEWYAGVYRLGMYGLQLAAS 250 K G F ++ WL GS Y ++ A + A + RL Y L L Sbjct: 193 -KFRFAALGIFAIVFIGFYFYPDINYKWLLGSKPYAEMGAASFKALLTRLSFYILSLIMV 251 Query: 251 LAFLGWVPHRLSRMTDWGRRTLYVFLLHGFVVRL 284 +FL +VP + T+ G+ TLYV+LLHGF VR+ Sbjct: 252 FSFLAFVPRKKYFFTNLGKNTLYVYLLHGFFVRI 285 >Q721H1.1 Q721H1_LISMF Putative membrane protein Length = 343 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 133/274 (48%), Gaps = 1/274 (0%) Query: 10 RGETFFLNLRFMLIVTVFAGNAIEPLIQSLSGMHSLYLWIFSFHMPLFVLVTGYFAGKSL 69 + E++F N +F+LI V G+ ++ I +G+ LY++I++FHMP FVL++G+FA Sbjct: 7 KRESYFDNAKFILIFLVVFGHFLQTFIADYAGVRVLYIYIYTFHMPAFVLISGFFAKSFG 66 Query: 70 TGAAGRKVLLQIGLQYLIFQTLYSVLDVSVFHAANIHHSFFAPYLLLWFLASHACWRLLM 129 +K + ++ L Y+ FQ +YS+ + N+ F P LWFL S W +++ Sbjct: 67 KPGYLKKTMKKLILPYVFFQLIYSIFYYFLLSKDNLSIQFLDPEWSLWFLLSLFFWNIML 126 Query: 130 LGMGRWSRAAQIIFSVSAGIAVGYLQLDGIWFSISRTFVYLPFFVIGYHFSFEAFVRFYN 189 + I ++ G+ GY + G + S+SRT V+ PFF++GY E F Sbjct: 127 FIFAKIKPWKSICIALFVGLVAGYFDIIGGYLSLSRTLVFFPFFLVGYFLKKEHFYYLKT 186 Query: 190 RYVKIXXXXXXXXXXXXXGTFGSELPPGWLYGSMTYMQLDAPEWYAGVYRLGMYGLQLAA 249 +V I TF L W GS Y + R +Y + + Sbjct: 187 HFVMILGGIFIGLLLSFI-TFHPNLNDKWFLGSKPYANFVEVKSLGLFIRALVYLISFGS 245 Query: 250 SLAFLGWVPHRLSRMTDWGRRTLYVFLLHGFVVR 283 AF ++P + T WG+ TLYV+LLHGF ++ Sbjct: 246 IAAFFSFIPRKRLFFTKWGKNTLYVYLLHGFFIK 279 >Q5KZT9.1 Q5KZT9_GEOKA Hypothetical conserved protein Length = 331 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/272 (31%), Positives = 140/272 (51%), Gaps = 1/272 (0%) Query: 12 ETFFLNLRFMLIVTVFAGNAIEPLIQSLSGMHSLYLWIFSFHMPLFVLVTGYFAGKSLTG 71 + +F N + L++ V G+ + P I + +HSLY WIF FHMP FV ++GYFA K Sbjct: 5 DYYFDNAKCALMLLVVFGHFLRPYIDDVLWVHSLYTWIFFFHMPAFVFISGYFAKKFHEH 64 Query: 72 AAGRKVLLQIGLQYLIFQTLYSVLDVSVFHAANIHHSFFAPYLLLWFLASHACWRLLMLG 131 +K+ ++ + Y++FQ +YS+ ++ ++ P+ LWFL S W +L+L Sbjct: 65 GYLQKITKKLLIPYVLFQLVYSIYYFFLYDKQSLELDLLTPHWSLWFLLSLFSWNVLLLW 124 Query: 132 MGRWSRAAQIIFSVSAGIAVGYLQLDGIWFSISRTFVYLPFFVIGYHFSFEAFVRFYNRY 191 GR + + ++ G+A G ++++ W S+SRT + PFF++G+ F A R + Sbjct: 125 FGRLPKRIALPMALLFGLAGGMMEVEK-WLSLSRTLTFFPFFLLGFFFQKSAIERLFAAP 183 Query: 192 VKIXXXXXXXXXXXXXGTFGSELPPGWLYGSMTYMQLDAPEWYAGVYRLGMYGLQLAASL 251 V++ +LP WLYGS +Y L E RL +YG L Sbjct: 184 VRLVSLFVLVGMFFVIHFGFPDLPQDWLYGSKSYDTLGVSESAGIASRLAIYGASLLMMF 243 Query: 252 AFLGWVPHRLSRMTDWGRRTLYVFLLHGFVVR 283 FL +P R + G RT Y+++LHGF+++ Sbjct: 244 GFLSLIPSRRFSFSVLGARTFYIYILHGFILK 275 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.143 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,760,216,669 Number of extensions: 64097255 Number of successful extensions: 185850 Number of sequences better than 1.0e-05: 108 Number of HSP's gapped: 185620 Number of HSP's successfully gapped: 109 Length of query: 346 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 210 Effective length of database: 1,779,438,163 Effective search space: 373682014230 Effective search space used: 373682014230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 131 (55.1 bits)