BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0171.0009.p (266 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z6E3.1 C0Z6E3_BREBN Putative uncharacterized protein 180 1e-43 Q92BK2.1 Q92BK2_LISIN Lin1546 protein 178 4e-43 Q4ENV3.1 Q4ENV3_LISMO Putative uncharacterized protein 177 1e-42 Q71ZF9.1 Q71ZF9_LISMF Putative uncharacterized protein 173 1e-41 C1KVF8.1 C1KVF8_LISMC Putative uncharacterized protein 173 1e-41 >C0Z6E3.1 C0Z6E3_BREBN Putative uncharacterized protein Length = 250 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 145/242 (59%), Gaps = 5/242 (2%) Query: 23 KKLTKRRVLLGIFSILIAAGFFLWRYLTPYAPEERAESALVSAGGVRVEQNDNWISFEPS 82 KK + VL+ + +I +A +W YL PY P++ A +A+ G+ V ++WI F+ Sbjct: 6 KKWFQALVLVTLAAICLA----IW-YLQPYQPDQAALTAMQGGEGITVMDTNDWIIFQGG 60 Query: 83 VTLGAAVIFXXXXXXXXXXXXXXXXXXXXXXHPFYIAKMPLNLALIKSDAAGEIIRVHPK 142 + +I + ++A+MPLNLA+ A ++++ +P Sbjct: 61 ESREPGLILYPGALVKPESYAPIARSLAGSGYHVFLARMPLNLAVSDMTRATQVLKAYPN 120 Query: 143 LSFVLGGHSLGGVMASRYAAEHADQLKGVYFLASYPDEKGSLKDTTLSVLSILGTEDRVV 202 +FV+GGHSLGG MA+++AA H D++ GV+ L +YP+ +G+LK L VLS+LG+ D V+ Sbjct: 121 KTFVIGGHSLGGTMAAQFAANHPDRINGVFLLGAYPNSQGNLKKVNLPVLSLLGSRDGVI 180 Query: 203 DQKKYNEGRSYLPGNTIYYSVKGGNHAQYGSYGEQKGDGKAAVSEEEQQTLTTRAMLDWM 262 + +++ E + YLP T+Y +++GGNH+Q+GSYG Q+GD AA++ +EQ T A+ DW+ Sbjct: 181 NMERFEESKQYLPERTVYMTIEGGNHSQFGSYGSQEGDKPAAITPQEQWQQTVAAIKDWL 240 Query: 263 GN 264 N Sbjct: 241 LN 242 >Q92BK2.1 Q92BK2_LISIN Lin1546 protein Length = 246 Score = 178 bits (452), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 95/234 (40%), Positives = 138/234 (58%), Gaps = 3/234 (1%) Query: 32 LGIF-SILIAAGFFLWRYLT-PYAPEERAESALVSAGGVRVEQNDNWISFEPSVT-LGAA 88 L IF S+++ +W Y P AE A S V V + ++ + F P + G + Sbjct: 4 LAIFGSVIVLFCLLIWGYFYFNSEPSNVAEEAANSTKTVDVLEENDILVFTPRKSDAGIS 63 Query: 89 VIFXXXXXXXXXXXXXXXXXXXXXXHPFYIAKMPLNLALIKSDAAGEIIRVHPKLSFVLG 148 VI + YIA+MPLNLA+ + A +II P FV+G Sbjct: 64 VILYPGAFVDALSYAPLANKLASSGYKTYIAEMPLNLAVFGKNRAADIIDEAPDEKFVIG 123 Query: 149 GHSLGGVMASRYAAEHADQLKGVYFLASYPDEKGSLKDTTLSVLSILGTEDRVVDQKKYN 208 GHSLGGVM+SR+A E+ +++GV+FLASYPD+KGSLK+ + LSI GT+D V+++ Y+ Sbjct: 124 GHSLGGVMSSRFAHENESEIEGVFFLASYPDKKGSLKNASFPALSITGTKDDVLNKDAYD 183 Query: 209 EGRSYLPGNTIYYSVKGGNHAQYGSYGEQKGDGKAAVSEEEQQTLTTRAMLDWM 262 + + YLP +T + S++GGNHAQ+GSYG Q GDGKA +SE EQ + A++ W+ Sbjct: 184 KNKKYLPKDTTFVSIEGGNHAQFGSYGAQHGDGKATISEAEQTDQVSNALIAWL 237 >Q4ENV3.1 Q4ENV3_LISMO Putative uncharacterized protein Length = 246 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 94/235 (40%), Positives = 136/235 (57%), Gaps = 3/235 (1%) Query: 32 LGIF-SILIAAGFFLWRYLTPYA-PEERAESALVSAGGVRVEQNDNWISFEPSVT-LGAA 88 + IF S ++ +W Y + P AE+A S V V + ++ + F P + + Sbjct: 4 IAIFGSAIVLFCLLIWGYFYFNSEPSTTAENAANSTKAVDVLEENDILVFTPRKSDADMS 63 Query: 89 VIFXXXXXXXXXXXXXXXXXXXXXXHPFYIAKMPLNLALIKSDAAGEIIRVHPKLSFVLG 148 VI + YI +MPLNLA+ + A +II P FV+G Sbjct: 64 VILYPGAFVDALSYAPLANKLASSGYKTYIVEMPLNLAVFGKNRAADIIDEAPDEKFVIG 123 Query: 149 GHSLGGVMASRYAAEHADQLKGVYFLASYPDEKGSLKDTTLSVLSILGTEDRVVDQKKYN 208 GHSLGGVM+SR+A ++ ++++G +FLASYPD+KGSLK+ + LSI T D V++Q YN Sbjct: 124 GHSLGGVMSSRFAHDNENEIEGAFFLASYPDKKGSLKNASFPALSITATNDDVLNQDSYN 183 Query: 209 EGRSYLPGNTIYYSVKGGNHAQYGSYGEQKGDGKAAVSEEEQQTLTTRAMLDWMG 263 + + YLP +T + S+KGGNHAQ+GSYGEQ GDGKAA+SE EQ A++ W+ Sbjct: 184 KNKKYLPKDTTFVSIKGGNHAQFGSYGEQHGDGKAAISEPEQTYQVANALVTWLN 238 >Q71ZF9.1 Q71ZF9_LISMF Putative uncharacterized protein Length = 246 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 3/235 (1%) Query: 32 LGIF-SILIAAGFFLWRYLTPYA-PEERAESALVSAGGVRVEQNDNWISFEP-SVTLGAA 88 + IF S ++ +W Y + P AE+A S V V + ++ + F P + + Sbjct: 4 IAIFGSAIVLFCLLIWGYFYFNSEPSTTAENAANSTKAVDVLEENDILVFTPRKLDADMS 63 Query: 89 VIFXXXXXXXXXXXXXXXXXXXXXXHPFYIAKMPLNLALIKSDAAGEIIRVHPKLSFVLG 148 VI + YI +MPLNLA+ + A +II P FV+G Sbjct: 64 VILYPGAFVDALSYAPLANKLASSGYKTYIVEMPLNLAVFGKNRAADIIDEAPDEKFVIG 123 Query: 149 GHSLGGVMASRYAAEHADQLKGVYFLASYPDEKGSLKDTTLSVLSILGTEDRVVDQKKYN 208 GHSLGGVM+SR+A ++ +++G +FLASYPD+KGSLK+ + LS+ T+D V++Q YN Sbjct: 124 GHSLGGVMSSRFAHDNESEIEGAFFLASYPDKKGSLKNASFPALSVTATKDEVLNQDSYN 183 Query: 209 EGRSYLPGNTIYYSVKGGNHAQYGSYGEQKGDGKAAVSEEEQQTLTTRAMLDWMG 263 + + YLP +T + S+KGGNHAQ+GSYGEQ GDGKA +S EQ A++ W+ Sbjct: 184 KNKKYLPKDTTFVSIKGGNHAQFGSYGEQHGDGKATISGPEQTDQVANALITWLN 238 >C1KVF8.1 C1KVF8_LISMC Putative uncharacterized protein Length = 246 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 3/235 (1%) Query: 32 LGIF-SILIAAGFFLWRYLTPYA-PEERAESALVSAGGVRVEQNDNWISFEP-SVTLGAA 88 + IF S ++ +W Y + P AE+A S V V + ++ + F P + + Sbjct: 4 IAIFGSAIVLFCLLIWGYFYFNSEPSTTAENAANSTKAVDVLEENDILVFTPRKLDADMS 63 Query: 89 VIFXXXXXXXXXXXXXXXXXXXXXXHPFYIAKMPLNLALIKSDAAGEIIRVHPKLSFVLG 148 VI + YI +MPLNLA+ + A +II P FV+G Sbjct: 64 VILYPGAFVDALSYAPLANKLASSGYKTYIVEMPLNLAVFGKNRAADIIDEAPDEKFVIG 123 Query: 149 GHSLGGVMASRYAAEHADQLKGVYFLASYPDEKGSLKDTTLSVLSILGTEDRVVDQKKYN 208 GHSLGGVM+SR+A ++ +++G +FLASYPD+KGSLK+ + LS+ T+D V++Q YN Sbjct: 124 GHSLGGVMSSRFAHDNESEIEGAFFLASYPDKKGSLKNASFPALSVTATKDEVLNQDSYN 183 Query: 209 EGRSYLPGNTIYYSVKGGNHAQYGSYGEQKGDGKAAVSEEEQQTLTTRAMLDWMG 263 + + YLP +T + S+KGGNHAQ+GSYGEQ GDGKA +S EQ A++ W+ Sbjct: 184 KNKKYLPKDTTFVSIKGGNHAQFGSYGEQHGDGKATISGPEQTDQVANALITWLN 238 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,419,558,589 Number of extensions: 53588473 Number of successful extensions: 144922 Number of sequences better than 1.0e-05: 145 Number of HSP's gapped: 144707 Number of HSP's successfully gapped: 145 Length of query: 266 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 133 Effective length of database: 1,807,701,208 Effective search space: 240424260664 Effective search space used: 240424260664 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)