BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0171.0003.p (269 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFN4.1 B3KFN4_9BACI UDP-glucose 4-epimerase 437 e-121 B1DH23.1 B1DH23_9BACL UDP-glucose 4-epimerase 382 e-104 C3L249.1 C3L249_CLOB6 UDP-glucose 4-epimerase EC=5.1.3.2 348 4e-94 B1QL25.1 B1QL25_CLOBO UDP-glucose 4-epimerase EC=5.1.3.2 348 4e-94 B1KYJ5.1 B1KYJ5_CLOBM UDP-glucose 4-epimerase EC=5.1.3.2 347 5e-94 >B3KFN4.1 B3KFN4_9BACI UDP-glucose 4-epimerase Length = 329 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 210/242 (86%), Positives = 225/242 (92%) Query: 1 MAILVTGGAGYIGSHTVAELLERGEEVVVIDNLLTGHREALLGGKLYEGDLRDKVTLNKL 60 MAILVTGGAGYIGSHTVAELLE+GE+VVVID+L TGHREALLGGKLY GDLRDK L +L Sbjct: 1 MAILVTGGAGYIGSHTVAELLEQGEDVVVIDSLETGHREALLGGKLYVGDLRDKALLKQL 60 Query: 61 FSENKIDAVIHFAASSLVGESMKDPVKYYDNNVYGTQCLLEAMQQAGVDKIVFSSTAATY 120 FS+N IDAVIHFAA+SLVGESMKDPVKYYDNNVYGT CLLEAM +AGV KIVFSSTAATY Sbjct: 61 FSDNDIDAVIHFAANSLVGESMKDPVKYYDNNVYGTLCLLEAMNEAGVRKIVFSSTAATY 120 Query: 121 GEPEKVPIEETDRTEPANVYGETKLTMERMMAWFDKVLGIKYVALRYFNAAGAHASGKIG 180 GEPEKVPIEETDRT+P NVYGETKL MERMM+WFD VLG+KYV+LRYFNAAG+HASGKIG Sbjct: 121 GEPEKVPIEETDRTQPTNVYGETKLMMERMMSWFDTVLGVKYVSLRYFNAAGSHASGKIG 180 Query: 181 EDHRPESHLIPLVLQTALKQRESIAVFGDDYPTEDGTCVRDYIHVSDLADAHVRAVNYLR 240 EDHRPESHLIPLVLQTALKQR SI+VFGDDY T DGTCVRDYIHVSDLA+AH+RAV YLR Sbjct: 181 EDHRPESHLIPLVLQTALKQRASISVFGDDYATPDGTCVRDYIHVSDLANAHLRAVEYLR 240 Query: 241 SG 242 G Sbjct: 241 RG 242 >B1DH23.1 B1DH23_9BACL UDP-glucose 4-epimerase Length = 331 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/243 (75%), Positives = 203/243 (83%) Query: 1 MAILVTGGAGYIGSHTVAELLERGEEVVVIDNLLTGHREALLGGKLYEGDLRDKVTLNKL 60 MA+LVTGGAGYIGSH VA L ERGEE+VV+DNL GHREA++GGKLY GDLRD ++ + Sbjct: 4 MAVLVTGGAGYIGSHAVAALAERGEEIVVVDNLQQGHREAVVGGKLYVGDLRDAEFMDTV 63 Query: 61 FSENKIDAVIHFAASSLVGESMKDPVKYYDNNVYGTQCLLEAMQQAGVDKIVFSSTAATY 120 F ENKIDAVIHFAA+SLVGESM +P KYY NNVYGT CLLE M + V KIVFSSTAATY Sbjct: 64 FKENKIDAVIHFAANSLVGESMTNPAKYYHNNVYGTLCLLEKMIEHDVKKIVFSSTAATY 123 Query: 121 GEPEKVPIEETDRTEPANVYGETKLTMERMMAWFDKVLGIKYVALRYFNAAGAHASGKIG 180 GEPE VPI+E DRT P N YGETKL ME+MM WFD G+KYV+LRYFNAAGAHASGKIG Sbjct: 124 GEPENVPIDEFDRTLPTNTYGETKLAMEKMMKWFDVAHGLKYVSLRYFNAAGAHASGKIG 183 Query: 181 EDHRPESHLIPLVLQTALKQRESIAVFGDDYPTEDGTCVRDYIHVSDLADAHVRAVNYLR 240 EDH PE+HLIP+VLQ AL QR I+VFGDDY T DGTC+RDYIHVSDLADAHV AV+ LR Sbjct: 184 EDHSPETHLIPIVLQAALGQRPHISVFGDDYATPDGTCIRDYIHVSDLADAHVLAVDKLR 243 Query: 241 SGS 243 GS Sbjct: 244 QGS 246 >C3L249.1 C3L249_CLOB6 UDP-glucose 4-epimerase EC=5.1.3.2 Length = 326 Score = 348 bits (892), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 162/240 (67%), Positives = 194/240 (80%) Query: 1 MAILVTGGAGYIGSHTVAELLERGEEVVVIDNLLTGHREALLGGKLYEGDLRDKVTLNKL 60 MAILV GGAGYIGSH VA L+E+ EEVV++DNL+TGH +A+ GGK Y+GDLRDK LNK+ Sbjct: 1 MAILVCGGAGYIGSHAVAALIEKNEEVVIVDNLVTGHEQAICGGKFYKGDLRDKEFLNKV 60 Query: 61 FSENKIDAVIHFAASSLVGESMKDPVKYYDNNVYGTQCLLEAMQQAGVDKIVFSSTAATY 120 F++NKIDAVIHFAA SLVGESM++P KYY+NNVYGT LLE M++ V KIVFSSTAATY Sbjct: 61 FNQNKIDAVIHFAAFSLVGESMEEPFKYYNNNVYGTLSLLETMKEHNVQKIVFSSTAATY 120 Query: 121 GEPEKVPIEETDRTEPANVYGETKLTMERMMAWFDKVLGIKYVALRYFNAAGAHASGKIG 180 GEPE +PI E D TEP N YGETKL +E+M+ W + IKYV LRYFN AGAH SG IG Sbjct: 121 GEPENIPILEEDLTEPTNAYGETKLAVEKMLKWAEMAYNIKYVVLRYFNVAGAHESGNIG 180 Query: 181 EDHRPESHLIPLVLQTALKQRESIAVFGDDYPTEDGTCVRDYIHVSDLADAHVRAVNYLR 240 E HR ESHLIP++LQ AL +RE I ++GDDY T+DG+C+RDYIHV DL +AH+ A+ LR Sbjct: 181 EAHRVESHLIPIILQVALGRREKIMIYGDDYNTKDGSCIRDYIHVMDLVEAHILALEKLR 240 >B1QL25.1 B1QL25_CLOBO UDP-glucose 4-epimerase EC=5.1.3.2 Length = 326 Score = 348 bits (892), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 162/240 (67%), Positives = 194/240 (80%) Query: 1 MAILVTGGAGYIGSHTVAELLERGEEVVVIDNLLTGHREALLGGKLYEGDLRDKVTLNKL 60 MAILV GGAGYIGSH VA L+E+ EEVV++DNL+TGH +A+ GGK Y+GDLRDK LNK+ Sbjct: 1 MAILVCGGAGYIGSHAVAALIEKNEEVVIVDNLVTGHEQAICGGKFYKGDLRDKEFLNKV 60 Query: 61 FSENKIDAVIHFAASSLVGESMKDPVKYYDNNVYGTQCLLEAMQQAGVDKIVFSSTAATY 120 F++NKIDAVIHFAA SLVGESM++P KYY+NNVYGT LLE M++ V KIVFSSTAATY Sbjct: 61 FNQNKIDAVIHFAAFSLVGESMEEPFKYYNNNVYGTLSLLETMKEHNVQKIVFSSTAATY 120 Query: 121 GEPEKVPIEETDRTEPANVYGETKLTMERMMAWFDKVLGIKYVALRYFNAAGAHASGKIG 180 GEPE +PI E D TEP N YGETKL +E+M+ W + IKYV LRYFN AGAH SG IG Sbjct: 121 GEPENIPILEEDLTEPTNAYGETKLAVEKMLKWAEMAYNIKYVVLRYFNVAGAHESGNIG 180 Query: 181 EDHRPESHLIPLVLQTALKQRESIAVFGDDYPTEDGTCVRDYIHVSDLADAHVRAVNYLR 240 E HR ESHLIP++LQ AL +RE I ++GDDY T+DG+C+RDYIHV DL +AH+ A+ LR Sbjct: 181 EAHRVESHLIPIILQVALGRREKIMIYGDDYNTKDGSCIRDYIHVMDLVEAHILALEKLR 240 >B1KYJ5.1 B1KYJ5_CLOBM UDP-glucose 4-epimerase EC=5.1.3.2 Length = 326 Score = 347 bits (891), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 162/240 (67%), Positives = 194/240 (80%) Query: 1 MAILVTGGAGYIGSHTVAELLERGEEVVVIDNLLTGHREALLGGKLYEGDLRDKVTLNKL 60 MA+LV GGAGYIGSH VA L+E+ EEVV++DNL+TGH +A+ GGK Y+GDLRDK LNK+ Sbjct: 1 MAVLVCGGAGYIGSHAVAALIEKNEEVVIVDNLVTGHEQAICGGKFYKGDLRDKEFLNKV 60 Query: 61 FSENKIDAVIHFAASSLVGESMKDPVKYYDNNVYGTQCLLEAMQQAGVDKIVFSSTAATY 120 F++NKIDAVIHFAA SLVGESM++P KYY+NNVYGT LLE M++ V KIVFSSTAATY Sbjct: 61 FNQNKIDAVIHFAAFSLVGESMEEPFKYYNNNVYGTLSLLETMKEHNVQKIVFSSTAATY 120 Query: 121 GEPEKVPIEETDRTEPANVYGETKLTMERMMAWFDKVLGIKYVALRYFNAAGAHASGKIG 180 GEPE +PI E D TEP N YGETKL +E+M+ W + IKYV LRYFN AGAH SG IG Sbjct: 121 GEPENIPILEEDLTEPTNAYGETKLAVEKMLRWAEMAYNIKYVVLRYFNVAGAHESGNIG 180 Query: 181 EDHRPESHLIPLVLQTALKQRESIAVFGDDYPTEDGTCVRDYIHVSDLADAHVRAVNYLR 240 E HR ESHLIP++LQ AL +RE I ++GDDY T+DG+CVRDYIHV DL +AH+ A+ LR Sbjct: 181 EAHRVESHLIPIILQVALGRREKIMIYGDDYNTKDGSCVRDYIHVMDLVEAHILALEKLR 240 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,580,226,037 Number of extensions: 64186409 Number of successful extensions: 226859 Number of sequences better than 1.0e-05: 8457 Number of HSP's gapped: 216865 Number of HSP's successfully gapped: 8468 Length of query: 269 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 136 Effective length of database: 1,807,701,208 Effective search space: 245847364288 Effective search space used: 245847364288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)