BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0171.0002.p
         (53 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B0NX99.1 B0NX99_9CLOT Putative uncharacterized protein                 86   1e-15
B3KFN4.1 B3KFN4_9BACI UDP-glucose 4-epimerase                          85   2e-15
A9KN45.1 A9KN45_CLOPH UDP-glucose 4-epimerase                          85   2e-15
A8U746.1 A8U746_9LACT UDP-glucose 4-epimerase                          81   3e-14
B0MBH7.1 B0MBH7_9FIRM Putative uncharacterized protein                 81   3e-14

>B0NX99.1 B0NX99_9CLOT Putative uncharacterized protein
          Length = 336

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 46/51 (90%)

Query: 1   VIQERRAGDPAVLVASSDKARSVLGWNPQHADVEDIIQSAWNWHSANPQGY 51
           V + RRAGDPAVL+ASS+KA+++LGW P+HAD+E+II SAW WHS++PQGY
Sbjct: 278 VEEGRRAGDPAVLIASSEKAKNILGWKPEHADLEEIIASAWKWHSSHPQGY 328


>B3KFN4.1 B3KFN4_9BACI UDP-glucose 4-epimerase
          Length = 329

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/53 (67%), Positives = 44/53 (83%)

Query: 1   VIQERRAGDPAVLVASSDKARSVLGWNPQHADVEDIIQSAWNWHSANPQGYGE 53
           V++ RRAGDPAVLVASSDKAR+VLGW P    +E+II+SAW WHS+ P GYG+
Sbjct: 276 VMEARRAGDPAVLVASSDKARTVLGWTPSRTTLEEIIESAWKWHSSRPDGYGD 328


>A9KN45.1 A9KN45_CLOPH UDP-glucose 4-epimerase
          Length = 330

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 44/51 (86%)

Query: 1   VIQERRAGDPAVLVASSDKARSVLGWNPQHADVEDIIQSAWNWHSANPQGY 51
           V  +RRAGDPA LVASS+KA+++LGW PQHAD+E+II+SAWNWH  +P G+
Sbjct: 278 VFADRRAGDPATLVASSEKAKAMLGWKPQHADIEEIIESAWNWHKNHPNGF 328


>A8U746.1 A8U746_9LACT UDP-glucose 4-epimerase
          Length = 333

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 42/51 (82%)

Query: 1   VIQERRAGDPAVLVASSDKARSVLGWNPQHADVEDIIQSAWNWHSANPQGY 51
           V+  RRAGDP+ L+ASS+KAR++LGW PQH D++ II SAWNWH+A P GY
Sbjct: 277 VVTARRAGDPSTLIASSEKARNILGWKPQHTDIKAIIASAWNWHNAFPNGY 327


>B0MBH7.1 B0MBH7_9FIRM Putative uncharacterized protein
          Length = 69

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 42/47 (89%)

Query: 5  RRAGDPAVLVASSDKARSVLGWNPQHADVEDIIQSAWNWHSANPQGY 51
          RRAGDPAVL+ASS+KA+ VLGW P+HAD+ +II+SAW WHS +P+GY
Sbjct: 20 RRAGDPAVLIASSEKAKKVLGWKPEHADLHEIIESAWRWHSTHPEGY 66


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.128    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 347,516,496
Number of extensions: 9358150
Number of successful extensions: 22537
Number of sequences better than 1.0e-05: 466
Number of HSP's gapped: 23389
Number of HSP's successfully gapped: 466
Length of query: 53
Length of database: 3,060,696,203
Length adjustment: 26
Effective length of query: 27
Effective length of database: 2,815,749,813
Effective search space: 76025244951
Effective search space used: 76025244951
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)