BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0029.p (500 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDL7.1 B3KDL7_9BACI Amino acid permease-associated region 660 0.0 C5D2M3.1 C5D2M3_9BACI Amino acid permease-associated region 580 e-163 C2QDM3.1 C2QDM3_BACCE Lysine-specific permease 575 e-162 A7GQB2.1 A7GQB2_BACCN Amino acid permease-associated region 575 e-162 C3C3Y5.1 C3C3Y5_BACTU Lysine-specific permease 574 e-162 >B3KDL7.1 B3KDL7_9BACI Amino acid permease-associated region Length = 483 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/484 (69%), Positives = 377/484 (77%), Gaps = 3/484 (0%) Query: 17 NTSXXXAPGLRKTFKARHLTMIALGGSIGTXXXXXXXXXXXXXXXXXXXXXYTAVGIMVY 76 N A L+++FKARH+TMIALGGSIGT Y AVG+MVY Sbjct: 2 NRKKAPAASLKQSFKARHMTMIALGGSIGTGLFLASGTAIASAGPGGALIAYAAVGLMVY 61 Query: 77 FLMTSLGELATYLPDSGSFSTYGTRFVSPAFGFAIGWNFWYNWAVTIAAELSAATVIIKY 136 FLMTSLGELATYLPDSGSFSTY +RFVSPAFGFA+GWNFWYNWAVTIAAEL+AATVIIK+ Sbjct: 62 FLMTSLGELATYLPDSGSFSTYASRFVSPAFGFAVGWNFWYNWAVTIAAELAAATVIIKF 121 Query: 137 WFPDSPXXXXXXXXXXXXXXXXXXXARGYGESEYWFAIIKIITVIVFLTVGVLMIFGILG 196 WFPDSP A+GYGESEYWFAIIK+ TVIVFL +GV+MIFGILG Sbjct: 122 WFPDSPSFLWSLLFLAIMFGLNILSAKGYGESEYWFAIIKVATVIVFLIIGVMMIFGILG 181 Query: 197 GKAVGFSNFQLXXXXXXXXXXXXXXXXXXXXXXXQGTELVGVAAGESENPRRNVPLAIRR 256 G+AVGFSNF L QGTEL+GVAAGESENPR++VP AIR+ Sbjct: 182 GEAVGFSNFSLGDGPVHGGFFALVGVFMAAGFSFQGTELIGVAAGESENPRKHVPKAIRQ 241 Query: 257 VFWRILIFYIFAILVIGLLIPYTNPDLLRSGIDDIGVSPFTIVFNKAGLAIAASVMNAVI 316 VFWRILIFYIFAI VIG+LIPYT+P LL+SG+D+IGVSPFT+VF KAGLA AASVMNAVI Sbjct: 242 VFWRILIFYIFAIFVIGMLIPYTHPSLLQSGVDNIGVSPFTLVFEKAGLAFAASVMNAVI 301 Query: 317 LSSVLSAGNSGMYASTRVLYAMAKDGMAPRALGRLNRRGVPVGALLVTTAVGMLAFLASF 376 LSSVLSAGNSGMYASTRVLYAMAK GMAP+ L RLN RGVPV AL+VT+AVGMLAFLASF Sbjct: 302 LSSVLSAGNSGMYASTRVLYAMAKQGMAPKWLSRLNSRGVPVAALIVTSAVGMLAFLASF 361 Query: 377 FGDGAVYNWLLNASGMCGFINWLGIAVCHYRFRRAFVKQGHSLEELPYRARWFPFGPIFA 436 FGDG VY WLLNASGMCGFINWL IAV HYRFR+A+V QG L++LP+RARWFPFGPIFA Sbjct: 362 FGDGVVYVWLLNASGMCGFINWLAIAVSHYRFRKAYVAQGKDLKDLPFRARWFPFGPIFA 421 Query: 437 LVLCLIAVFGQNLGAFNGGSIDWYGILVSYISLPLFLLIWFGYRWFRKSRIVPLDQCDLS 496 +LCL+A+ GQ G F+ G IDW I+ +Y+S+PLFL IWFGYR +KSRIVPLD+CDLS Sbjct: 422 FLLCLVAIIGQ--GNFS-GEIDWLTIIATYVSIPLFLSIWFGYRLIKKSRIVPLDECDLS 478 Query: 497 THPE 500 T + Sbjct: 479 TDAK 482 >C5D2M3.1 C5D2M3_9BACI Amino acid permease-associated region Length = 490 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 278/480 (57%), Positives = 353/480 (73%), Gaps = 3/480 (0%) Query: 17 NTSXXXAPGLRKTFKARHLTMIALGGSIGTXXXXXXXXXXXXXXXXXXXXXYTAVGIMVY 76 +++ GLR+ K RHLTMI+LGG+IGT Y A+GIMVY Sbjct: 12 SSASLSESGLRRKLKTRHLTMISLGGTIGTGLFLASGGAVHTAGPGGALAAYIAIGIMVY 71 Query: 77 FLMTSLGELATYLPDSGSFSTYGTRFVSPAFGFAIGWNFWYNWAVTIAAELSAATVIIKY 136 FLMTSL E+A Y+P SGSFSTY T+FV PA GFA+GWN+WYNWA+TIAAELSA T+I+K+ Sbjct: 72 FLMTSLAEMAAYMPVSGSFSTYATKFVDPALGFALGWNYWYNWAITIAAELSAVTMIMKF 131 Query: 137 WFPDSPXXXXXXXXXXXXXXXXXXXARGYGESEYWFAIIKIITVIVFLTVGVLMIFGILG 196 WFP SP +G+GE+EYWF++IK+ TVIVFL V LMIFGI+G Sbjct: 132 WFPHSPSLLWSALCLSIMFLLNYLSVKGFGEAEYWFSLIKVATVIVFLIVSFLMIFGIMG 191 Query: 197 GKAVGFSNFQLXXXXXXXXXXXXXXXXXXXXXXXQGTELVGVAAGESENPRRNVPLAIRR 256 G+A+GF NF + QGTEL+GVAAGE+E+P ++P AIRR Sbjct: 192 GEAIGFKNFTIGDAPFHGGFMAMLGIFMAAGFSFQGTELLGVAAGETEDPEHSIPRAIRR 251 Query: 257 VFWRILIFYIFAILVIGLLIPYTNPDLLRSGIDDIGVSPFTIVFNKAGLAIAASVMNAVI 316 VFWRIL+FY+ AIL IGLLIPYT+ L D+ VSPFT+VF+KAG+A AASVMNAVI Sbjct: 252 VFWRILLFYVLAILAIGLLIPYTDERLANG---DVTVSPFTLVFDKAGIAFAASVMNAVI 308 Query: 317 LSSVLSAGNSGMYASTRVLYAMAKDGMAPRALGRLNRRGVPVGALLVTTAVGMLAFLASF 376 L++VLSAGNSGMYASTR+L+ +A++G AP+ L +L++RGVPV AL+VT+++G LAFLASF Sbjct: 309 LTAVLSAGNSGMYASTRMLWDLAREGKAPKFLAKLDKRGVPVNALIVTSSIGTLAFLASF 368 Query: 377 FGDGAVYNWLLNASGMCGFINWLGIAVCHYRFRRAFVKQGHSLEELPYRARWFPFGPIFA 436 FGDG VY WLLNASGM GFI WLGIA+ HYRFR+A++ QG SL++LPY+A+WFPFGPIFA Sbjct: 369 FGDGVVYTWLLNASGMSGFIAWLGIAISHYRFRKAYIAQGKSLDDLPYKAKWFPFGPIFA 428 Query: 437 LVLCLIAVFGQNLGAFNGGSIDWYGILVSYISLPLFLLIWFGYRWFRKSRIVPLDQCDLS 496 ++C I + GQN AF GG+IDWYG+LVSYI LPLF+++W GY++ +K++IVPL +CDL Sbjct: 429 FIVCTIVILGQNYPAFIGGTIDWYGVLVSYIGLPLFIIVWLGYKFVKKTKIVPLHECDLE 488 >C2QDM3.1 C2QDM3_BACCE Lysine-specific permease Length = 488 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 276/491 (56%), Positives = 356/491 (72%), Gaps = 4/491 (0%) Query: 6 NNQPHQPGQNSNTSXXXAPGLRKTFKARHLTMIALGGSIGTXXXXXXXXXXXXXXXXXXX 65 N+ +Q + T+ L+++ K+RHLTMI+LGG+IGT Sbjct: 2 NSATNQTTSETQTTKGKGE-LKRSLKSRHLTMISLGGTIGTGLFLASGGVIHTAGPGGAL 60 Query: 66 XXYTAVGIMVYFLMTSLGELATYLPDSGSFSTYGTRFVSPAFGFAIGWNFWYNWAVTIAA 125 Y A+GIMVYFLMTSL ELA Y+P +GSFSTY T+FV P+ GFA+GWN+WYNWA+TIAA Sbjct: 61 VAYAAIGIMVYFLMTSLAELAAYMPVTGSFSTYATKFVDPSLGFALGWNYWYNWAITIAA 120 Query: 126 ELSAATVIIKYWFPDSPXXXXXXXXXXXXXXXXXXXARGYGESEYWFAIIKIITVIVFLT 185 EL+A T+I+K+WFPD+P +G+GESEYWFA+IK++T+I+FL Sbjct: 121 ELAAVTLIMKFWFPDTPSLIWSGLCLAIIFLLNYLSVKGFGESEYWFALIKVVTIIIFLI 180 Query: 186 VGVLMIFGILGGKAVGFSNFQLXXXXXXXXXXXXXXXXXXXXXXXQGTELVGVAAGESEN 245 VG +MIFGI+GG++VGF NF + QGTEL+GVAAGE+ + Sbjct: 181 VGFMMIFGIMGGESVGFKNFTVADAPFNGGIMAIIGVFMAAGFSFQGTELLGVAAGETSD 240 Query: 246 PRRNVPLAIRRVFWRILIFYIFAILVIGLLIPYTNPDLLRSGIDDIGVSPFTIVFNKAGL 305 P RN+P AIR +FWRIL+FYI AILVIGLLIPYT L S D+ VSPFT++F KAG+ Sbjct: 241 PERNIPKAIRSIFWRILLFYILAILVIGLLIPYTTESLAAS---DVTVSPFTLIFEKAGV 297 Query: 306 AIAASVMNAVILSSVLSAGNSGMYASTRVLYAMAKDGMAPRALGRLNRRGVPVGALLVTT 365 A AASVMNAVIL++VLSAGNSGMYASTR+L+ +A+ G AP+ LG+L+ RGVPV AL+VT+ Sbjct: 298 AFAASVMNAVILTAVLSAGNSGMYASTRMLWDLARQGKAPKFLGKLDSRGVPVNALIVTS 357 Query: 366 AVGMLAFLASFFGDGAVYNWLLNASGMCGFINWLGIAVCHYRFRRAFVKQGHSLEELPYR 425 VG +AF+AS FGDG VY WLLNASGM GFI W+GIA+ HYRFR+A++ QG L++LPYR Sbjct: 358 IVGSIAFIASLFGDGVVYIWLLNASGMSGFIAWVGIAISHYRFRKAYIAQGKDLKDLPYR 417 Query: 426 ARWFPFGPIFALVLCLIAVFGQNLGAFNGGSIDWYGILVSYISLPLFLLIWFGYRWFRKS 485 A+WFPFGPIFA LC+I + GQN GAF G SIDW G+LVSYI LPLFL++W GY++ +K+ Sbjct: 418 AKWFPFGPIFAFALCVIVILGQNYGAFMGESIDWNGVLVSYIGLPLFLVLWLGYKFTKKT 477 Query: 486 RIVPLDQCDLS 496 +++PLD+C+L Sbjct: 478 KVIPLDKCELK 488 >A7GQB2.1 A7GQB2_BACCN Amino acid permease-associated region Length = 488 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 282/490 (57%), Positives = 350/490 (71%), Gaps = 3/490 (0%) Query: 6 NNQPHQPGQNSNTSXXXAPGLRKTFKARHLTMIALGGSIGTXXXXXXXXXXXXXXXXXXX 65 NN Q + S LR+ K+RHLTMI+LGG+IGT Sbjct: 2 NNIADQATSKTQQSTQNQGELRRGLKSRHLTMISLGGTIGTGLFLASGGVIHSAGPGGAL 61 Query: 66 XXYTAVGIMVYFLMTSLGELATYLPDSGSFSTYGTRFVSPAFGFAIGWNFWYNWAVTIAA 125 Y A+GIMVYFLMTSL ELA Y+P +GSFSTY T+FV P+ GFA+GWN+WYNWA+TIAA Sbjct: 62 VAYVAIGIMVYFLMTSLAELAAYMPVAGSFSTYATKFVDPSLGFALGWNYWYNWAITIAA 121 Query: 126 ELSAATVIIKYWFPDSPXXXXXXXXXXXXXXXXXXXARGYGESEYWFAIIKIITVIVFLT 185 EL+A T+I+K+WFP++P +G+GE+EYWFA+IK+ TVI+FL Sbjct: 122 ELAAVTLIMKFWFPNTPSLIWSAICLAIMFLLNYLSVKGFGEAEYWFALIKVATVILFLI 181 Query: 186 VGVLMIFGILGGKAVGFSNFQLXXXXXXXXXXXXXXXXXXXXXXXQGTELVGVAAGESEN 245 VG +MIFGI+GG+ VGF NF + QGTEL+GVAAGE+ + Sbjct: 182 VGFMMIFGIMGGEPVGFKNFTVADAPFSGGIMAIIGVFMAAGFSFQGTELLGVAAGETSD 241 Query: 246 PRRNVPLAIRRVFWRILIFYIFAILVIGLLIPYTNPDLLRSGIDDIGVSPFTIVFNKAGL 305 P R++P AIR +FWRIL+FYIFAILVIGLLIPYT L S D+ VSPFT+VF KAG+ Sbjct: 242 PERSIPKAIRSIFWRILLFYIFAILVIGLLIPYTTDSLAAS---DVTVSPFTLVFEKAGV 298 Query: 306 AIAASVMNAVILSSVLSAGNSGMYASTRVLYAMAKDGMAPRALGRLNRRGVPVGALLVTT 365 A AASVMNAVIL++VLSAGNSGMYASTR+L+ +A+ G AP+ LG+LN+RGVPV AL+ T+ Sbjct: 299 AFAASVMNAVILTAVLSAGNSGMYASTRMLWDLARQGKAPKFLGKLNKRGVPVNALIATS 358 Query: 366 AVGMLAFLASFFGDGAVYNWLLNASGMCGFINWLGIAVCHYRFRRAFVKQGHSLEELPYR 425 VG AFLAS FGDG VY WLLNASGM GFI W+GIA+ HYRFR+A++ QG L +LPY+ Sbjct: 359 LVGSAAFLASLFGDGIVYVWLLNASGMSGFIAWIGIAISHYRFRKAYIAQGKDLNDLPYK 418 Query: 426 ARWFPFGPIFALVLCLIAVFGQNLGAFNGGSIDWYGILVSYISLPLFLLIWFGYRWFRKS 485 A+WFPFGPIFA LCLI + GQN GAF G SIDW G+LVSYI LPLFL+IW GY++ +K+ Sbjct: 419 AKWFPFGPIFAFTLCLIVILGQNYGAFMGESIDWNGVLVSYIGLPLFLIIWLGYKFVKKT 478 Query: 486 RIVPLDQCDL 495 +IVPLD+C+L Sbjct: 479 KIVPLDKCEL 488 >C3C3Y5.1 C3C3Y5_BACTU Lysine-specific permease Length = 488 Score = 574 bits (1480), Expect = e-162, Method: Compositional matrix adjust. Identities = 278/491 (56%), Positives = 352/491 (71%), Gaps = 4/491 (0%) Query: 6 NNQPHQPGQNSNTSXXXAPGLRKTFKARHLTMIALGGSIGTXXXXXXXXXXXXXXXXXXX 65 N+ +Q + T+ LR+ K+RHLTMI+LGG+IGT Sbjct: 2 NSATNQTTSQTETTKGKGE-LRRGLKSRHLTMISLGGTIGTGLFLASGGVIHSAGPGGAL 60 Query: 66 XXYTAVGIMVYFLMTSLGELATYLPDSGSFSTYGTRFVSPAFGFAIGWNFWYNWAVTIAA 125 Y A+GIMVYFLMTSL ELA Y+P +GSFSTY T+FV P+ GFA+GWN+WYNWA+TIAA Sbjct: 61 IAYAAIGIMVYFLMTSLAELAAYMPVTGSFSTYATKFVDPSLGFALGWNYWYNWAITIAA 120 Query: 126 ELSAATVIIKYWFPDSPXXXXXXXXXXXXXXXXXXXARGYGESEYWFAIIKIITVIVFLT 185 EL+A T+I+K+WFPD+P +G+GESEYWFA+IK++T+I+FL Sbjct: 121 ELAAVTLIMKFWFPDTPSLIWSGLCLAIIFLLNYLSVKGFGESEYWFALIKVVTIIIFLI 180 Query: 186 VGVLMIFGILGGKAVGFSNFQLXXXXXXXXXXXXXXXXXXXXXXXQGTELVGVAAGESEN 245 VG +MIFGI+GG+ VGF NF + QGTEL+GVAAGE+ + Sbjct: 181 VGFMMIFGIMGGETVGFKNFTVADAPFNGGIMAIIGVFMAAGFSFQGTELLGVAAGETSD 240 Query: 246 PRRNVPLAIRRVFWRILIFYIFAILVIGLLIPYTNPDLLRSGIDDIGVSPFTIVFNKAGL 305 P RN+P AIR +FWRIL+FYI AILVIGLLIPYT L S D+ VSPFT++F KAG+ Sbjct: 241 PERNIPKAIRSIFWRILLFYILAILVIGLLIPYTTESLAAS---DVTVSPFTLIFEKAGV 297 Query: 306 AIAASVMNAVILSSVLSAGNSGMYASTRVLYAMAKDGMAPRALGRLNRRGVPVGALLVTT 365 A AASVMNAVIL++VLSAGNSGMYASTR+L+ +A+ G AP+ LG+L+ RGVPV AL+VT+ Sbjct: 298 AFAASVMNAVILTAVLSAGNSGMYASTRMLWDLARQGKAPKFLGKLDSRGVPVNALIVTS 357 Query: 366 AVGMLAFLASFFGDGAVYNWLLNASGMCGFINWLGIAVCHYRFRRAFVKQGHSLEELPYR 425 VG +AF+AS FGDG VY WLLNASGM GFI W+GIA+ HYRFR+A++ QG L ELPYR Sbjct: 358 IVGSIAFIASLFGDGVVYIWLLNASGMSGFIAWVGIAISHYRFRKAYIAQGKDLNELPYR 417 Query: 426 ARWFPFGPIFALVLCLIAVFGQNLGAFNGGSIDWYGILVSYISLPLFLLIWFGYRWFRKS 485 A+WFPFGPIFA LC+I + GQN GAF G SIDW G+LVSYI LPLFL +W GY++ +K+ Sbjct: 418 AKWFPFGPIFAFTLCIIVILGQNYGAFMGESIDWNGVLVSYIGLPLFLALWLGYKFTKKT 477 Query: 486 RIVPLDQCDLS 496 +++PLD+C+L Sbjct: 478 KVIPLDKCELK 488 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.142 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,613,853,915 Number of extensions: 100122006 Number of successful extensions: 372769 Number of sequences better than 1.0e-05: 5210 Number of HSP's gapped: 356390 Number of HSP's successfully gapped: 5968 Length of query: 500 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 360 Effective length of database: 1,741,754,103 Effective search space: 627031477080 Effective search space used: 627031477080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 133 (55.8 bits)