BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0028.p (377 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDL6.1 B3KDL6_9BACI PBS lyase HEAT domain protein repeat-conta... 513 e-143 B1D5S3.1 B1D5S3_9BACL PBS lyase HEAT domain protein repeat-conta... 365 3e-99 P54169.1 YPGR_BACSU Uncharacterized protein ypgR 357 2e-96 C2QSE5.1 C2QSE5_BACCE Putative uncharacterized protein 352 4e-95 C2MK68.1 C2MK68_BACCE Putative uncharacterized protein 350 1e-94 >B3KDL6.1 B3KDL6_9BACI PBS lyase HEAT domain protein repeat-containing protein Length = 376 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 258/378 (68%), Positives = 301/378 (79%), Gaps = 3/378 (0%) Query: 1 MKITFIEPTPSPNTMKLHLDETLEPGVRRTYTPESQRSAPSWAREMLTIPGVTSIYHAAD 60 MKITFIEPTPSPN+M LHLDETLE G+RRTYT +++RSAP W R++L IPGV S++H D Sbjct: 1 MKITFIEPTPSPNSMMLHLDETLESGIRRTYTLDNERSAPPWIRQLLHIPGVKSVFHTLD 60 Query: 61 FAALERKGSADWAAILREVQTRFGAEGLSADFNLEDENAGAHFGESQVFVQMFRGIPIQI 120 F AL+RKG+ADW +IL VQ FG EGL+A L++ FGE+QVFVQ FR IP+QI Sbjct: 61 FIALDRKGNADWPSILGAVQEIFGQEGLAA--GLKEGADDIAFGEAQVFVQYFRNIPMQI 118 Query: 121 RVKTGASEERIALSARFTKAVTDVASAVLIKERKLTDYGVRYGEPETIAREVEQELEAAY 180 RVK+G EERI LS RF++AV V ++ LIKERKL +YGVRYG+ E IAR+VEQELEAA+ Sbjct: 119 RVKSGNQEERIGLSERFSQAVAAVGTSTLIKERKLKEYGVRYGQLEDIARDVEQELEAAF 178 Query: 181 PQERLDSLVQQAIAHGAGGE-FVEQREKKDQAELLRDLKDEDWRVRYAALEDLAPTAELL 239 PQERLD ++ QAIAHGA E FVEQR K E ++DEDWRVRYAAL+ L PT + + Sbjct: 179 PQERLDKVIAQAIAHGASDEDFVEQRRKLTDEETEAAMQDEDWRVRYAALDALEPTEKHI 238 Query: 240 PELRAALHDPKLHIRRLAVVYLGDIRTPEAMELLYEAMADSAPAVRRTAGDTLSDIGDPA 299 P LR AL DPK+ IRRL VVYLGD+RTPEAMELLYEAM D PAVRRTAGDTLSDIGD A Sbjct: 239 PLLRKALRDPKMQIRRLVVVYLGDLRTPEAMELLYEAMRDETPAVRRTAGDTLSDIGDAA 298 Query: 300 ATPMMTASLTDKSKLVRWRAARFLYEVGTAEAQEALSLAVDDPEFEVGLQARMALERIAS 359 ATP+M SL D SK+VRWRAARFLYEVGT EA+ AL A +DPEFEV LQARMALERI S Sbjct: 299 ATPVMVESLKDSSKIVRWRAARFLYEVGTEEARSALEEAANDPEFEVSLQARMALERIES 358 Query: 360 GEEAAGTVWQQMSERRRT 377 GEEAAGTVWQQM++R ++ Sbjct: 359 GEEAAGTVWQQMAKRNQS 376 >B1D5S3.1 B1D5S3_9BACL PBS lyase HEAT domain protein repeat-containing protein Length = 382 Score = 365 bits (938), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 202/377 (53%), Positives = 253/377 (67%), Gaps = 3/377 (0%) Query: 1 MKITFIEPTPSPNTMKLHLDETLEPGVRRTYTPESQRSAPSWAREMLTIPGVTSIYHAAD 60 MK+ IEPTPSPN+MKL++DE+L G+R++YT + SAP + +L I GV SI+ AD Sbjct: 1 MKLISIEPTPSPNSMKLNVDESLPRGIRQSYTKKEIESAPEPLKALLAIEGVRSIFRTAD 60 Query: 61 FAALERKGSADWAAILREVQTRFGAEGLSADFNLEDENAGAHFGESQVFVQMFRGIPIQI 120 F AL+R SADWA IL + +T A + +GE+ V VQM+RGIP+Q+ Sbjct: 61 FIALDRVASADWARILADARTLLQGGNDGDAAAGAALAAES-YGEAHVLVQMYRGIPMQV 119 Query: 121 RVKTGASEERIALSARFTKAVTDVASAVLIKERKLTDYGVRYGEPETIAREVEQELEAAY 180 RVK G E R AL +FT AVT+ A A +I+ERKL ++GVRYGE E IA E+ +ELEAAY Sbjct: 120 RVKNGEREARSALPQKFTDAVTEAAGASMIRERKLEEFGVRYGELEEIAAEIVKELEAAY 179 Query: 181 PQERLDSLVQQAIAHGAGGEFVEQREKK--DQAELLRDLKDEDWRVRYAALEDLAPTAEL 238 +RL L+ A A G G E + E+ + +W+VRYAALE +AP EL Sbjct: 180 TPDRLKELISAAQALGPGEESAAPARPAPLSREEIAERFESPEWQVRYAALERMAPEPEL 239 Query: 239 LPELRAALHDPKLHIRRLAVVYLGDIRTPEAMELLYEAMADSAPAVRRTAGDTLSDIGDP 298 LP + ALHD + IRRLAVVYLGD+RTPEAM L+EA+ D + +VRRTAGDTLSD GDP Sbjct: 240 LPLIAKALHDENMSIRRLAVVYLGDLRTPEAMPYLFEALRDKSVSVRRTAGDTLSDWGDP 299 Query: 299 AATPMMTASLTDKSKLVRWRAARFLYEVGTAEAQEALSLAVDDPEFEVGLQARMALERIA 358 AAT M +L D +KLVRWRAARFLYE G A EAL A D EFE+ LQA++ALERI Sbjct: 300 AATGPMIDALRDPNKLVRWRAARFLYEAGDESAVEALREAAKDAEFEIQLQAQIALERIE 359 Query: 359 SGEEAAGTVWQQMSERR 375 GEEAAG+VWQQM+ R Sbjct: 360 RGEEAAGSVWQQMTAAR 376 >P54169.1 YPGR_BACSU Uncharacterized protein ypgR Length = 377 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 198/379 (52%), Positives = 245/379 (64%), Gaps = 8/379 (2%) Query: 1 MKITFIEPTPSPNTMKLHLDETLEPGVRRTYTPESQRSAPSWAREMLTIPGVTSIYHAAD 60 MKI IEPTPSPNTMK+ L E L G Y PE AP E+L I GV +YH AD Sbjct: 1 MKIKSIEPTPSPNTMKVILTEELPAGKSNNYKPEQAEGAPLVIAEILKIDGVKGVYHVAD 60 Query: 61 FAALERKGSADWAAILREVQTRFGAEGL-SADFNLEDENAGAHFGESQVFVQMFRGIPIQ 119 F A+ER DW IL +V+T FG E SA+ N D+ + FGE +VFVQMF GIP+Q Sbjct: 61 FLAVERNARYDWKDILPQVRTAFGMESAESAEENRSDQES---FGEVKVFVQMFSGIPMQ 117 Query: 120 IRVKTGASEERIALSARFTKAVTDVAS--AVLIKERKLTDYGVRYGEPETIAREVEQELE 177 +++ G EER L RF +A+ + S + ++ ER + GVR+G+ + I +V +EL+ Sbjct: 118 VKLTDGEREERFGLPERFQQAILKLRSEASNVVFERAWKEQGVRFGDFDEIGHDVTEELQ 177 Query: 178 AAYPQERLDSLVQQAIAHGAGGEFVEQREKKDQAELLRDLKDEDWRVRYAALEDLAPTAE 237 AAY ERL L + A A G G E + ++K L L DEDW+ RYA LE + P E Sbjct: 178 AAYSDERLKRLTE-AAAQGKG-EAKQAVQRKAYKVTLDMLDDEDWKKRYAHLEQMDPKEE 235 Query: 238 LLPELRAALHDPKLHIRRLAVVYLGDIRTPEAMELLYEAMADSAPAVRRTAGDTLSDIGD 297 +P L+ AL DPK+ IRR AVVYLG I TP+ + LLY+A+ D A +VRRTAGD LSDIGD Sbjct: 236 DIPVLQKALDDPKVSIRRQAVVYLGMIETPDVLPLLYKALEDKAVSVRRTAGDCLSDIGD 295 Query: 298 PAATPMMTASLTDKSKLVRWRAARFLYEVGTAEAQEALSLAVDDPEFEVGLQARMALERI 357 P A P M SL+D SKLVRWRAA FLYEVG A EAL A DDPEFEV LQ +MALERI Sbjct: 296 PQAIPAMIKSLSDSSKLVRWRAAMFLYEVGDESAIEALRAAEDDPEFEVSLQVKMALERI 355 Query: 358 ASGEEAAGTVWQQMSERRR 376 GEEA G+VW+QM+E R+ Sbjct: 356 EHGEEAKGSVWKQMTESRK 374 >C2QSE5.1 C2QSE5_BACCE Putative uncharacterized protein Length = 375 Score = 352 bits (902), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 183/379 (48%), Positives = 251/379 (66%), Gaps = 9/379 (2%) Query: 1 MKITFIEPTPSPNTMKLHLDETLEPGVRRTYTPESQRSAPSWAREMLTIPGVTSIYHAAD 60 MKI IEPTPSPNTMK+ L+E L G R YT E++ AP +E+L I G+ +YH AD Sbjct: 1 MKIKAIEPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVAD 60 Query: 61 FAALERKGSADWAAILREVQTRFGAEGLSADFNLEDENAGAHFGESQVFVQMFRGIPIQI 120 F A+ER DW +L++V+ FG E + +E AHFGE +VFVQMF IP+Q+ Sbjct: 61 FLAVERNAKYDWKVLLQQVRAVFGEEVVEE----SEEQQLAHFGEVKVFVQMFFTIPMQV 116 Query: 121 RVKTGASEERIALSARFTKAVTDV--ASAVLIKERKLTDYGVRYGEPETIAREVEQELEA 178 ++ G +EER+ L RF +++ V ++ ++KERK + RYG E I +EV +E+ A Sbjct: 117 KLTDGTTEERVGLPDRFKESIMKVQMSAPNVVKERKWVEQSTRYGNFEEIGKEVVEEIVA 176 Query: 179 AYPQERLDSLVQQAIAHGAGGEF-VEQREKKDQAELLRDLKDEDWRVRYAALEDLAPTAE 237 AYP+ER++ V++ + E +++RE E + +KD DW+ R+AALE + PT E Sbjct: 177 AYPEERVNETVKELLNQAGAVEVTIQRREPYKVTEEM--MKDADWKKRFAALEQMDPTEE 234 Query: 238 LLPELRAALHDPKLHIRRLAVVYLGDIRTPEAMELLYEAMADSAPAVRRTAGDTLSDIGD 297 +P L+ AL D K+ IRRLA YLG ++ E + LLY+A+ D + +VRRTAGD LSD+GD Sbjct: 235 DIPVLKMALDDEKVSIRRLATAYLGMVKGDEVLPLLYKALLDRSVSVRRTAGDCLSDVGD 294 Query: 298 PAATPMMTASLTDKSKLVRWRAARFLYEVGTAEAQEALSLAVDDPEFEVGLQARMALERI 357 PAA +M SL D SKLVRWRAA FL+E+G A AL +A DDPEFEV +QAR+ALERI Sbjct: 295 PAAMFVMIKSLKDSSKLVRWRAAMFLFELGDESAIPALKVAQDDPEFEVAMQARLALERI 354 Query: 358 ASGEEAAGTVWQQMSERRR 376 GEEA G+VW+QM+E R+ Sbjct: 355 EGGEEAKGSVWKQMTESRK 373 >C2MK68.1 C2MK68_BACCE Putative uncharacterized protein Length = 375 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 183/379 (48%), Positives = 250/379 (65%), Gaps = 9/379 (2%) Query: 1 MKITFIEPTPSPNTMKLHLDETLEPGVRRTYTPESQRSAPSWAREMLTIPGVTSIYHAAD 60 MKI IEPTPSPNTMK+ L+E L G R YT E++ AP +E+L I G+ +YH AD Sbjct: 1 MKIKAIEPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVAD 60 Query: 61 FAALERKGSADWAAILREVQTRFGAEGLSADFNLEDENAGAHFGESQVFVQMFRGIPIQI 120 F A+ER DW +L++V+ FG E + +E AHFGE +VFVQMF IP+Q+ Sbjct: 61 FLAVERNAKYDWKVLLQQVRAVFGEEVVEE----SEEQQLAHFGEVKVFVQMFFTIPMQV 116 Query: 121 RVKTGASEERIALSARFTKAVTDV--ASAVLIKERKLTDYGVRYGEPETIAREVEQELEA 178 ++ G +EER+ L RF +++ V ++ ++KERK + RYG E I +EV +E+ A Sbjct: 117 KLTDGTTEERVGLPDRFKESIMKVQMSAPNVVKERKWVEQSTRYGNFEEIGKEVVEEIVA 176 Query: 179 AYPQERLDSLVQQAIAHGAGGEF-VEQREKKDQAELLRDLKDEDWRVRYAALEDLAPTAE 237 AYP+ER++ V++ + E +++RE E + +KD DW+ R+AALE + PT E Sbjct: 177 AYPEERVNETVKELLNQAGAVEVTIQKREPYKVTEEM--MKDADWKKRFAALEQMDPTEE 234 Query: 238 LLPELRAALHDPKLHIRRLAVVYLGDIRTPEAMELLYEAMADSAPAVRRTAGDTLSDIGD 297 +P L+ AL D K+ IRRLA YLG ++ E + LLY+A+ D + +VRRTAGD LSD+GD Sbjct: 235 DIPVLKMALDDEKVSIRRLATAYLGMVKGDEVLPLLYKALLDRSVSVRRTAGDCLSDVGD 294 Query: 298 PAATPMMTASLTDKSKLVRWRAARFLYEVGTAEAQEALSLAVDDPEFEVGLQARMALERI 357 PAA +M SL D SKLVRWRAA FL+E+G A AL A DDPEFEV +QAR+ALERI Sbjct: 295 PAAMFVMIKSLKDPSKLVRWRAAMFLFELGDESAIPALKAAQDDPEFEVAMQARLALERI 354 Query: 358 ASGEEAAGTVWQQMSERRR 376 GEEA G+VW+QM+E R+ Sbjct: 355 EGGEEAKGSVWKQMTESRK 373 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.130 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,158,815,624 Number of extensions: 86070186 Number of successful extensions: 268396 Number of sequences better than 1.0e-05: 237 Number of HSP's gapped: 267694 Number of HSP's successfully gapped: 324 Length of query: 377 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 240 Effective length of database: 1,770,017,148 Effective search space: 424804115520 Effective search space used: 424804115520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)