BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0027.p (350 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDL1.1 B3KDL1_9BACI Putative uncharacterized protein 499 e-139 B1D5S2.1 B1D5S2_9BACL Putative uncharacterized protein 374 e-102 C5DAK9.1 C5DAK9_9BACI Putative uncharacterized protein 353 1e-95 C3J3A8.1 C3J3A8_9BACI Putative uncharacterized protein 340 1e-91 B7Y6G7.1 B7Y6G7_9BACI Putative uncharacterized protein 340 1e-91 >B3KDL1.1 B3KDL1_9BACI Putative uncharacterized protein Length = 343 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 230/339 (67%), Positives = 270/339 (79%), Gaps = 14/339 (4%) Query: 22 MARVRYNNIDNVSTDKTLKQLRQWREERRMKKKDYSYKVPNLPPKLDYLSENRLDTTVTW 81 M R+RYNNIDNVSTDKTLKQ +QWR+ERR KKKDYSY +PNL P L YL NR +T+VTW Sbjct: 1 MPRIRYNNIDNVSTDKTLKQFKQWRDERRQKKKDYSYCIPNLTPDLQYLHSNRHETSVTW 60 Query: 82 IGHSTFLLQYEGVNIITDPVWARRLGFEKRITPPGIPLSGIPPVDLILISHSHYDHLHLA 141 IGH+TF +QYEG+NI+TDPVWARR+GF KR+ PG+P+ IPP+D+ILISHSHYDH+H++ Sbjct: 61 IGHATFFIQYEGMNIVTDPVWARRMGFNKRLGEPGLPIHEIPPIDVILISHSHYDHMHVS 120 Query: 142 SIRKLYKAGTTLVVPVGLKRKMVRKGFVNCLEMQWWEEIKVGAVKLTFVPTQHWTRRTPF 201 SIRKLY+A TT++VPVGL+RKM+ KGF +E+QWWE + + VK +FVPTQHWTRRTPF Sbjct: 121 SIRKLYRADTTIIVPVGLRRKMINKGFRRVIELQWWESVAIKGVKFSFVPTQHWTRRTPF 180 Query: 202 DTNTSHWGGFVLEP--------------AEPRKHPQGDGGSRKLPPNLYFAGDSGFFPGF 247 DTNTSHWGGFV+EP + P + G+R LPPNLYFAGDSG+F GF Sbjct: 181 DTNTSHWGGFVMEPVLQDGKTDSSSSDESPCINEPVAEDGTRLLPPNLYFAGDSGYFEGF 240 Query: 248 KEIGRRFKLHVALMPIGAYEPEWFMSSQHVTPEEAIQAFLDVGAELMIPMHFGTFRLADD 307 K IG RF +H+ALMPIGAYEPEWFM+SQHV PEEA+QAF DV AE MIPMH+GTF+LADD Sbjct: 241 KLIGERFNIHLALMPIGAYEPEWFMTSQHVNPEEALQAFQDVKAETMIPMHYGTFKLADD 300 Query: 308 TAREALDRMEQARLAQGIAGERIRTLAYGETLIVHPEER 346 TAREALDRME R GIA ERIR L YGET V PE R Sbjct: 301 TAREALDRMEAERKRLGIAKERIRVLKYGETFKVQPERR 339 >B1D5S2.1 B1D5S2_9BACL Putative uncharacterized protein Length = 325 Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust. Identities = 170/316 (53%), Positives = 229/316 (72%), Gaps = 13/316 (4%) Query: 25 VRYNNIDNVSTDKTLKQLRQWREER--RMKKKDYSYKVPNLPPKLDYLSENRLDTTVTWI 82 ++ N + V ++K L++WR+ER ++K KDYSY +PN+ P L +L ENR+ ++TW+ Sbjct: 7 TKFTNSEPVQLQNSMKHLKRWRQERLRKIKTKDYSYSIPNIEPDLPFLHENRVKPSLTWV 66 Query: 83 GHSTFLLQYEGVNIITDPVWARRLGFEKRITPPGIPLSGIPPVDLILISHSHYDHLHLAS 142 GHSTF +Q G NIITDPVWA ++ F++R+ PPG+P+ +PPVD+ILISHSHYDHLH+ S Sbjct: 67 GHSTFFIQLAGKNIITDPVWAGQMAFQRRLAPPGLPIDDVPPVDIILISHSHYDHLHIQS 126 Query: 143 IRKLYKAGTTLVVPVGLKRKMVRKGFVNCLEMQWWEEIKVGAVKLTFVPTQHWTRRTPFD 202 +R+L + L+VP GL+ K+ KGF N E+ WWE + V +++TFVP+QHWTRR +D Sbjct: 127 LRRL-QGNKLLLVPAGLRTKLRLKGFTNVRELHWWESVVVDGIRITFVPSQHWTRRNLWD 185 Query: 203 TNTSHWGGFVLEPAEPRKHPQGDGGSRKLPPNLYFAGDSGFFPGFKEIGRRFKLHVALMP 262 N+SHWGG+V+EPA L P +YFAGDSG+F GF+EIG RF + VALMP Sbjct: 186 MNSSHWGGWVMEPAR----------KDSLDPTIYFAGDSGYFSGFREIGSRFDIDVALMP 235 Query: 263 IGAYEPEWFMSSQHVTPEEAIQAFLDVGAELMIPMHFGTFRLADDTAREALDRMEQARLA 322 IGAYEPEWFM QHVTPEEA++AF D GA+ +PMH+G F+LADDT REALDR+ R Sbjct: 236 IGAYEPEWFMGPQHVTPEEALRAFEDTGAKWFVPMHYGAFKLADDTPREALDRLANERER 295 Query: 323 QGIAGERIRTLAYGET 338 G+ +R+R L +GET Sbjct: 296 IGLEEQRVRILLHGET 311 >C5DAK9.1 C5DAK9_9BACI Putative uncharacterized protein Length = 308 Score = 353 bits (906), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 171/315 (54%), Positives = 214/315 (67%), Gaps = 16/315 (5%) Query: 26 RYNNIDNVSTDKTLKQLRQWREERRMKKKDYSYKVPNL-PPKLDYLSENRLDTTVTWIGH 84 RY N+D VST KT R+W++ER+ KKKD SY+VP+ PP+ L NR T ++W+GH Sbjct: 3 RYENLDGVSTKKTFSDFRRWQKERKNKKKDLSYQVPHADPPQYPLLHTNRFRTLLSWVGH 62 Query: 85 STFLLQYEGVNIITDPVWARRLGFEKRITPPGIPLSGIPPVDLILISHSHYDHLHLASIR 144 STF++Q G+ I+TDPVWA R+G KR+T PGI L+ +P VD++LISH HYDHLH SIR Sbjct: 63 STFVIQLNGITIVTDPVWATRMGTAKRLTEPGISLNNMPKVDVVLISHGHYDHLHFPSIR 122 Query: 145 KLYKAGTTLVVPVGLKRKMVRKGFVNCLEMQWWEEIKVGAVKLTFVPTQHWTRRTPFDTN 204 KL K + VPVGL R RKG+ E +WWEE G V TFVP QHWTRRT +D N Sbjct: 123 KL-KGTPRIFVPVGLGRLFRRKGYKQVTEFEWWEEQSFGDVTFTFVPAQHWTRRTLWDMN 181 Query: 205 TSHWGGFVLEPAEPRKHPQGDGGSRKLPPNLYFAGDSGFFPGFKEIGRRFKLHVALMPIG 264 TSHWGG+V+ E P +YFAGDSG+F GF++IG RF + AL+PIG Sbjct: 182 TSHWGGWVMRSKEK--------------PTIYFAGDSGYFRGFRDIGERFSIDYALLPIG 227 Query: 265 AYEPEWFMSSQHVTPEEAIQAFLDVGAELMIPMHFGTFRLADDTAREALDRMEQARLAQG 324 AYEPEWFM QHVTPEEA+QAF+D A+ IPMH+G FRLADDT +EALDR+ +G Sbjct: 228 AYEPEWFMGPQHVTPEEAVQAFVDCQADYFIPMHYGAFRLADDTPKEALDRLLAEWKRRG 287 Query: 325 IAGERIRTLAYGETL 339 + R++ L GE L Sbjct: 288 LDESRLKCLKLGEVL 302 >C3J3A8.1 C3J3A8_9BACI Putative uncharacterized protein Length = 335 Score = 340 bits (872), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 163/315 (51%), Positives = 213/315 (67%), Gaps = 16/315 (5%) Query: 26 RYNNIDNVSTDKTLKQLRQWREERRMKKKDYSYKVPNL-PPKLDYLSENRLDTTVTWIGH 84 RY N+D VST KT R+W+ ER+ K+KD SY VP++ PP+ + L E + W+GH Sbjct: 4 RYENLDGVSTHKTWADFRRWQRERKQKQKDLSYVVPHVSPPQYERLQEPNGRPQLCWVGH 63 Query: 85 STFLLQYEGVNIITDPVWARRLGFEKRITPPGIPLSGIPPVDLILISHSHYDHLHLASIR 144 STF++Q G+ I+TDPVWA +G KR+T PG+PL +PPVD++LISH HYDHLH S+R Sbjct: 64 STFVVQLNGITIVTDPVWANWMGAAKRLTAPGVPLDKMPPVDVVLISHGHYDHLHFGSLR 123 Query: 145 KLYKAGTTLVVPVGLKRKMVRKGFVNCLEMQWWEEIKVGAVKLTFVPTQHWTRRTPFDTN 204 +L K + VPVGL R R+G+ + E+ WWE + V LTFVP+QHWTRRT +DTN Sbjct: 124 RL-KGDPHVFVPVGLGRLFRRRGYRHVTELSWWETVVFRDVSLTFVPSQHWTRRTLWDTN 182 Query: 205 TSHWGGFVLEPAEPRKHPQGDGGSRKLPPNLYFAGDSGFFPGFKEIGRRFKLHVALMPIG 264 TSHWGG+V+ + P +YFAGDSG+F GF++IG RF + AL+PIG Sbjct: 183 TSHWGGWVI--------------TSNGAPTIYFAGDSGYFRGFRDIGERFSIDYALLPIG 228 Query: 265 AYEPEWFMSSQHVTPEEAIQAFLDVGAELMIPMHFGTFRLADDTAREALDRMEQARLAQG 324 AYEPEWFM QH TPEEA+QAFLD + L +PMH+G FRLADDT +EALDR+ +G Sbjct: 229 AYEPEWFMGPQHTTPEEAVQAFLDCRSRLFVPMHYGAFRLADDTPKEALDRLWAEWRRRG 288 Query: 325 IAGERIRTLAYGETL 339 + ER+ L GE + Sbjct: 289 LEEERLLCLKLGEVI 303 >B7Y6G7.1 B7Y6G7_9BACI Putative uncharacterized protein Length = 335 Score = 340 bits (872), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 163/315 (51%), Positives = 213/315 (67%), Gaps = 16/315 (5%) Query: 26 RYNNIDNVSTDKTLKQLRQWREERRMKKKDYSYKVPNL-PPKLDYLSENRLDTTVTWIGH 84 RY N+D VST KT R+W+ ER+ K+KD SY VP++ PP+ + L E + W+GH Sbjct: 4 RYENLDGVSTHKTWADFRRWQRERKQKQKDLSYVVPHVSPPQYERLQEPNGRPQLCWVGH 63 Query: 85 STFLLQYEGVNIITDPVWARRLGFEKRITPPGIPLSGIPPVDLILISHSHYDHLHLASIR 144 STF++Q G+ I+TDPVWA +G KR+T PG+PL +PPVD++LISH HYDHLH S+R Sbjct: 64 STFVVQLNGITIVTDPVWANWMGAAKRLTAPGVPLDKMPPVDVVLISHGHYDHLHFGSLR 123 Query: 145 KLYKAGTTLVVPVGLKRKMVRKGFVNCLEMQWWEEIKVGAVKLTFVPTQHWTRRTPFDTN 204 +L K + VPVGL R R+G+ + E+ WWE + V LTFVP+QHWTRRT +DTN Sbjct: 124 RL-KGDPHVFVPVGLGRLFRRRGYRHVTELSWWETVVFRDVSLTFVPSQHWTRRTLWDTN 182 Query: 205 TSHWGGFVLEPAEPRKHPQGDGGSRKLPPNLYFAGDSGFFPGFKEIGRRFKLHVALMPIG 264 TSHWGG+V+ + P +YFAGDSG+F GF++IG RF + AL+PIG Sbjct: 183 TSHWGGWVI--------------TSNGAPTIYFAGDSGYFRGFRDIGERFSIDYALLPIG 228 Query: 265 AYEPEWFMSSQHVTPEEAIQAFLDVGAELMIPMHFGTFRLADDTAREALDRMEQARLAQG 324 AYEPEWFM QH TPEEA+QAFLD + L +PMH+G FRLADDT +EALDR+ +G Sbjct: 229 AYEPEWFMGPQHTTPEEAVQAFLDCRSRLFVPMHYGAFRLADDTPKEALDRLWAEWRRRG 288 Query: 325 IAGERIRTLAYGETL 339 + ER+ L GE + Sbjct: 289 LEEERLLCLKLGEVI 303 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,287,876,609 Number of extensions: 102350290 Number of successful extensions: 231198 Number of sequences better than 1.0e-05: 927 Number of HSP's gapped: 228373 Number of HSP's successfully gapped: 934 Length of query: 350 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 214 Effective length of database: 1,779,438,163 Effective search space: 380799766882 Effective search space used: 380799766882 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)