BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0022.p
         (127 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KDK7.1 B3KDK7_9BACI Putative uncharacterized protein                 69   2e-10

>B3KDK7.1 B3KDK7_9BACI Putative uncharacterized protein
          Length = 114

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 61/120 (50%), Gaps = 11/120 (9%)

Query: 1   MKKFASIAVAMGLVASFAATASADEVSGTAANATTVTGSTYGDKF----ETVITQTDLKP 56
           MKK  SI  A+ L  S  A ASAD ++GT +N +     +  D      E VI       
Sbjct: 1   MKKTLSITAALALTLSLTAVASADPINGTVSNTSGPAPISVEDPIIKPEEVVIV------ 54

Query: 57  ATPMIILTKATPFHLSVGSMTPAGWLSAQTIDTTGAVTTDSAGNEWREIYTWLGKAWIKV 116
            TPMI LT  T F+ +  +    G L+ Q +DTTG       G EW E+YTWLGKAWI V
Sbjct: 55  PTPMIELTSKTYFY-NAPNGEKLGALAPQKLDTTGNRYDVMLGGEWVEVYTWLGKAWIYV 113


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.124    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 751,040,472
Number of extensions: 27573588
Number of successful extensions: 73655
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 73654
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 3,060,696,203
Length adjustment: 92
Effective length of query: 35
Effective length of database: 2,193,962,823
Effective search space: 76788698805
Effective search space used: 76788698805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)