BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0020.p
         (174 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KDK2.1 B3KDK2_9BACI Putative uncharacterized protein                141   2e-32
Q2B398.1 Q2B398_9BACI YtxG                                             54   6e-06

>B3KDK2.1 B3KDK2_9BACI Putative uncharacterized protein
          Length = 173

 Score =  141 bits (356), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/149 (50%), Positives = 110/149 (73%), Gaps = 5/149 (3%)

Query: 29  KTLKSAKESLDKVSQTLQEVQKTIDELTYEVKTTVRHANDITADVQNKIQKIDPIVDSVK 88
           KTLK+A +SL+KV+QTLQEVQKT+DEL+YEVK T+R+ NDIT DVQ+K+++IDP++D+VK
Sbjct: 23  KTLKAATQSLEKVTQTLQEVQKTVDELSYEVKQTIRNTNDITVDVQHKMKQIDPVMDTVK 82

Query: 89  NLGDVMNELTLTVKQVSVTVIEKYRKSRELKEKAKAVSIENTPLTPAEERTVKSYETVNA 148
           NLG+ ++E+T  VKQ+S  ++ ++++SR  ++K +   +E  PLT A++RT +SYE V  
Sbjct: 83  NLGEALSEVTYAVKQISAGMVSRFKQSRIEQKKEQPARME-VPLT-AQDRTFQSYEAVYQ 140

Query: 149 K-KAPGKIAMA--LKGVDTAAAIWQKFRH 174
           K +A  K      L  VDTA  +W  FR 
Sbjct: 141 KTEAEEKFRSRNWLSYVDTAVGLWNSFRR 169


>Q2B398.1 Q2B398_9BACI YtxG
          Length = 176

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 20/158 (12%)

Query: 4   VLEMIIDLSXXXXXXXXXXXXXXXXKTLKSAKESLDKVSQTLQEVQKTIDELTYEVKTTV 63
           +LE+I+ LS                +TLKS   +LD VS TL  +++ +D +T E    +
Sbjct: 5   LLEIILYLSVALIAVAFLVLVIFLSRTLKSLATTLDSVSTTLDGLEQQLDGVTRETTVLL 64

Query: 64  RHANDITADVQNKIQKIDPIVDSVKNLGDVMNELTLTVKQVSVTVIEKYRKSR------- 116
              N + +D+Q K + ++ +V++V+++GD + +   T++ +S +V  +  +++       
Sbjct: 65  HKTNALASDIQQKSESLNGVVNAVRDVGDSVRKFNGTIQSISSSVNTQVEQNKDKISQVV 124

Query: 117 -------ELKEKAKAVSIENTPL------TPAEERTVK 141
                  ELK+K K    +++PL       P  ER V+
Sbjct: 125 QWSNVFLELKDKWKIRKQQSSPLQNHIEDIPPAERAVE 162


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.309    0.125    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 738,979,304
Number of extensions: 23937995
Number of successful extensions: 138052
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 138154
Number of HSP's successfully gapped: 46
Length of query: 174
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 48
Effective length of database: 1,873,648,313
Effective search space: 89935119024
Effective search space used: 89935119024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 126 (53.1 bits)