BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0019.p
         (177 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KDK1.1 B3KDK1_9BACI Putative uncharacterized protein                 78   3e-13

>B3KDK1.1 B3KDK1_9BACI Putative uncharacterized protein
          Length = 177

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 12/147 (8%)

Query: 32  QPPVVQSFE-----HSVNISPYIGSFNSLAGVSLYMPLEELLQVKGSPLEVTPDPWQGCQ 86
           QPPVV +       H+ + S     + +L G+SL     ++++  G+P  +  D   G  
Sbjct: 32  QPPVVHAAADVGQAHTGDNSSE--GYGTLNGISLADTKRDIVRKLGTPARIEQDGLSGTT 89

Query: 87  EYHYADMSAGICEGAVLYVHVTP-MEARQYGLYLNDQRIEPHKNNLAQLLGTPDFVAEDG 145
           +  Y DM  G+  G   YVHV P  E+ Q    +  Q I    +++   LG P F AEDG
Sbjct: 90  KLLYKDMEVGVRNGYTEYVHVKPSAESFQ----VEGQHIGMSTDHVRSSLGKPYFKAEDG 145

Query: 146 DVYMRGTTALKIYRNSQTGEWDGIDLF 172
           DVY+    ALK+Y +  TGE +G+DLF
Sbjct: 146 DVYLENHHALKVYIDRDTGEIEGVDLF 172


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,107,642,857
Number of extensions: 46100094
Number of successful extensions: 96208
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 96205
Number of HSP's successfully gapped: 2
Length of query: 177
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 50
Effective length of database: 1,864,227,298
Effective search space: 93211364900
Effective search space used: 93211364900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)