BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0017.p (387 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDJ9.1 B3KDJ9_9BACI Phosphoserine phosphatase EC=3.1.3.3 603 e-171 B1D844.1 B1D844_9BACL Response regulator receiver modulated seri... 381 e-104 C2PBA0.1 C2PBA0_BACCE Sigma factor sigB regulation protein rsbU 362 3e-98 C2YMZ2.1 C2YMZ2_BACCE Sigma factor sigB regulation protein rsbU 360 1e-97 C2URP0.1 C2URP0_BACCE Sigma factor sigB regulation protein rsbU 360 2e-97 >B3KDJ9.1 B3KDJ9_9BACI Phosphoserine phosphatase EC=3.1.3.3 Length = 391 Score = 603 bits (1555), Expect = e-171, Method: Compositional matrix adjust. Identities = 285/384 (74%), Positives = 339/384 (88%), Gaps = 2/384 (0%) Query: 1 LIVDDNPTNVIIIREILKKENYRNFITAASAKEMLKLLGIGSENEEKRSRQSDIDLILLD 60 LIVDDNPTNVIIIREILKKENY+N ++A+SA EML+ LGIG + + R++DIDL+LLD Sbjct: 4 LIVDDNPTNVIIIREILKKENYQNTLSASSALEMLEHLGIGDRSHDPNPRRADIDLVLLD 63 Query: 61 MMMPEMDGIEACRVVQQHEHLRDIPIIMVTAVGDSKKLAEALDAGAVDYVTKPINKVELM 120 MMMPEMDGIEACR+VQQ+EHL+DIPIIMVTAVGDSKKLAEALDAGAVDYVTKPINKVELM Sbjct: 64 MMMPEMDGIEACRIVQQYEHLKDIPIIMVTAVGDSKKLAEALDAGAVDYVTKPINKVELM 123 Query: 121 ARIRLALRLKREKDWHVERDQRIQDELKLAALVQNAVLSLPLKDEAFEVHAIYQPSFELA 180 ARIRLALRLK EKDWH+ER+QR+Q ELKLAA+VQNAVLS P++DE E+HA+YQPS ELA Sbjct: 124 ARIRLALRLKHEKDWHIEREQRVQAELKLAAMVQNAVLSSPIEDEQLEIHALYQPSAELA 183 Query: 181 GDLYAWYPLGDGRYAVILLDMMGHGISSSLFCMFLASVLKDTVTTYVQPEKVIQELNRRF 240 GDLYAW+PLGDGRY VILLDMMGHGI+SSLFCMF+ASVLKDTVTTYV+PEKV+QELNRRF Sbjct: 184 GDLYAWFPLGDGRYGVILLDMMGHGITSSLFCMFIASVLKDTVTTYVEPEKVVQELNRRF 243 Query: 241 NQLYIEKQLVQYYFTAIYLVIDTRLKRIDYVNAGHPPGLFFEGGAAKPVLLESNCHPVGL 300 NQL + +QL+QYYFTAIYLV+DTRLKR+DYVNAGHPP LFF+ + + L+ C PVGL Sbjct: 244 NQLNLGEQLIQYYFTAIYLVVDTRLKRVDYVNAGHPPALFFKED-GEVMTLDQGCCPVGL 302 Query: 301 FDSIE-IQPQTLTFEDEGHLVLYTDGLLEMAEGGQEEQLEFMTSHLNGGHEWLEEPMRAA 359 FD IE ++P++ +E EGHLV+YTDGLLE+ EGG +E+L+++ +HL G H W E+ M+ Sbjct: 303 FDRIEDMEPRSFHYEGEGHLVMYTDGLLELVEGGHDEKLDYLKTHLGGPHHWREDEMKEQ 362 Query: 360 FFNEAPNQERDDDKCLVWISLKKG 383 +F + P+QER+DDKCLVWISLKKG Sbjct: 363 YFVDDPSQEREDDKCLVWISLKKG 386 >B1D844.1 B1D844_9BACL Response regulator receiver modulated serine phosphatase EC=3.1.3.3 Length = 381 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/383 (51%), Positives = 259/383 (67%), Gaps = 7/383 (1%) Query: 1 LIVDDNPTNVIIIREILKKENYRNFITAASAKEMLKLLGIGSENEEKRSRQSDIDLILLD 60 +IVDDN TN +II+ ILKK Y+N +TA+SA E+ +LGIG S D++LIL+D Sbjct: 4 IIVDDNTTNQLIIQTILKKAGYQNLLTASSAHELYDMLGIGGSTT---SADLDVELILMD 60 Query: 61 MMMPEMDGIEACRVVQQHEHLRDIPIIMVTAVGDSKKLAEALDAGAVDYVTKPINKVELM 120 MMMP++DGIEACR V Q +DIPII VTAVGDS K+AEALDAGA DYV KPIN++EL+ Sbjct: 61 MMMPDIDGIEACRTVLQDCRYKDIPIIFVTAVGDSNKMAEALDAGACDYVMKPINRMELL 120 Query: 121 ARIRLALRLKREKDWHVERDQRIQDELKLAALVQNAVLSLPLKDEAFEVHAIYQPSFELA 180 ARIR ++RLK+E D H ERD+ ++ L+LA VQ +VLS + DE ++A YQPS ELA Sbjct: 121 ARIRSSMRLKQEIDRHKERDKNMRYNLELAKQVQLSVLSTEIDDENMRINAAYQPSSELA 180 Query: 181 GDLYAWYPLGDGRYAVILLDMMGHGISSSLFCMFLASVLKDTVTTYVQPEKVIQELNRRF 240 GD Y WY + RY VILLDMMGHGISSSL CM+++SVL+DT+T E+V+ ELNR Sbjct: 181 GDFYNWYRIDKNRYGVILLDMMGHGISSSLVCMYISSVLRDTITRMNDMEQVMHELNRYM 240 Query: 241 NQLYIEKQLVQYYFTAIYLVIDTRLKRIDYVNAGHPPGLFFEGGAAKPVLLESNCHPVGL 300 NQL+I+ +L+ YYFTAIYLV+D K I+YVNAGHPPG+ F G KP LLE C +GL Sbjct: 241 NQLHIKDELMNYYFTAIYLVLDVENKTIEYVNAGHPPGIAFLDG--KPALLEPCCSAIGL 298 Query: 301 FDSIEIQPQTLTFEDEGHLVLYTDGLLE--MAEGGQEEQLEFMTSHLNGGHEWLEEPMRA 358 F+ +++ +L +E E +VLYTDGL + A G+E + + + + + A Sbjct: 299 FNKLKLSKGSLQYEREAGIVLYTDGLTDGLAAITGEEPSYDTLIDLMRNKDQLDPSGLVA 358 Query: 359 AFFNEAPNQERDDDKCLVWISLK 381 + + DD CLV + K Sbjct: 359 TMIPQDSGTVQKDDICLVTLYTK 381 >C2PBA0.1 C2PBA0_BACCE Sigma factor sigB regulation protein rsbU Length = 380 Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 183/381 (48%), Positives = 260/381 (68%), Gaps = 12/381 (3%) Query: 1 LIVDDNPTNVIIIREILKKENYRNFITAASAKEMLKLLGIGSENEEKRSRQSDIDLILLD 60 LIVDDNP N+ +I +ILK+ Y++ ++ SA+E+ + + G ++ SR ++IDLILLD Sbjct: 4 LIVDDNPVNIFVIEKILKQAGYQDLVSLNSAQELFEYIQFGKDS----SRHNEIDLILLD 59 Query: 61 MMMPEMDGIEACRVVQQHEHLRDIPIIMVTAVGDSKKLAEALDAGAVDYVTKPINKVELM 120 +MMPE+DG+E CR +Q+ E +DIPII VTA+ D+ KLAEALD GA+DY+TKPINKVEL+ Sbjct: 60 IMMPEIDGLEVCRRLQKEEKFKDIPIIFVTALEDANKLAEALDIGAMDYITKPINKVELL 119 Query: 121 ARIRLALRLKREKDWHVERDQRIQDELKLAALVQNAVLSLPLKDEAFEVHAIYQPSFELA 180 AR+R+ALRLK E +WH E+++ +++EL LA VQ +LS PL+++ ++ A Y PSF+LA Sbjct: 120 ARMRVALRLKSELNWHKEQEENLRNELDLATQVQRNLLSSPLREDHIKIEASYLPSFKLA 179 Query: 181 GDLYAWYPLGDGRYAVILLDMMGHGISSSLFCMFLASVLKDTVTTYVQPEKVIQELNRRF 240 GD+Y WY + + RY +ILLD+MGHGIS+SL CMF++SVL++T+ + PE VI++LN+ Sbjct: 180 GDMYYWYKIDENRYGIILLDVMGHGISASLVCMFISSVLRETIKCLIDPELVIKDLNKYM 239 Query: 241 NQLYIEKQLVQYYFTAIYLVIDTRLKRIDYVNAGHPPGLFFEGGAAKPVLLESNCHPVGL 300 L+ E + YYFTAIYLV+DT + I+YVNAGHP G A L +C VG Sbjct: 240 TLLHNENDNIPYYFTAIYLVVDTEKRTIEYVNAGHPSGYVLVDEANVVELNRGSC-AVGF 298 Query: 301 FDSIEIQPQTLTFEDEGHLVLYTDGLLEMA---EGGQEEQLEFMTSHLNGGHEWLEEPMR 357 FD I+++ + FE +VL+TDG+LE E EE+L T G LEE + Sbjct: 299 FDEIKVKKTVIPFEKNAQIVLFTDGVLEAIANDEFESEEKLRAFTERKWGD---LEEEIE 355 Query: 358 AAFFNEAPNQERDDDKCLVWI 378 F+ E +E+ DD CL+ I Sbjct: 356 -GFYKEEQKKEQSDDMCLIMI 375 >C2YMZ2.1 C2YMZ2_BACCE Sigma factor sigB regulation protein rsbU Length = 380 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 182/381 (47%), Positives = 259/381 (67%), Gaps = 12/381 (3%) Query: 1 LIVDDNPTNVIIIREILKKENYRNFITAASAKEMLKLLGIGSENEEKRSRQSDIDLILLD 60 LIVDDNP N+ +I +ILK+ Y++ ++ SA+E+ + + G ++ SR ++IDLILLD Sbjct: 4 LIVDDNPVNIFVIEKILKQAGYQDLVSLNSAQELFEYIHFGKDS----SRHNEIDLILLD 59 Query: 61 MMMPEMDGIEACRVVQQHEHLRDIPIIMVTAVGDSKKLAEALDAGAVDYVTKPINKVELM 120 +MMPE+DG+E CR +Q E +DIPII VTA+ D+ KLAEALD GA+DY+TKPINKVEL+ Sbjct: 60 IMMPEIDGLEVCRRLQNEEKFKDIPIIFVTALEDANKLAEALDIGAMDYITKPINKVELL 119 Query: 121 ARIRLALRLKREKDWHVERDQRIQDELKLAALVQNAVLSLPLKDEAFEVHAIYQPSFELA 180 AR+R+ALRLK E +WH E+++ +++EL LA VQ +LS PL+++ ++ A Y PSF+LA Sbjct: 120 ARMRVALRLKSELNWHKEQEENLRNELDLATQVQRNLLSSPLREDHIKIEASYLPSFKLA 179 Query: 181 GDLYAWYPLGDGRYAVILLDMMGHGISSSLFCMFLASVLKDTVTTYVQPEKVIQELNRRF 240 GD+Y WY + + RY +ILLD+MGHGIS+SL CMF++SVL++T+ + + PE VI++LN+ Sbjct: 180 GDMYYWYKIDENRYGIILLDVMGHGISASLVCMFISSVLRETIKSLIDPELVIKDLNKYM 239 Query: 241 NQLYIEKQLVQYYFTAIYLVIDTRLKRIDYVNAGHPPGLFFEGGAAKPVLLESNCHPVGL 300 L+ E + YYFTAIYLV+DT + I+YVNAGHP G L +C VG Sbjct: 240 TLLHNENDDIPYYFTAIYLVVDTEKRTIEYVNAGHPSGYVLVDETNMVELNRGSC-AVGF 298 Query: 301 FDSIEIQPQTLTFEDEGHLVLYTDGLLEMA---EGGQEEQLEFMTSHLNGGHEWLEEPMR 357 FD I+++ + FE +VL+TDG+LE E EE+L T G LEE + Sbjct: 299 FDEIKVKKTVIPFEKNAQIVLFTDGVLEAIAHDEFEAEEKLRAFTERKWGD---LEEEIE 355 Query: 358 AAFFNEAPNQERDDDKCLVWI 378 F+ E +E+ DD CL+ I Sbjct: 356 -GFYKEEQKKEQSDDMCLIMI 375 >C2URP0.1 C2URP0_BACCE Sigma factor sigB regulation protein rsbU Length = 380 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 182/381 (47%), Positives = 258/381 (67%), Gaps = 12/381 (3%) Query: 1 LIVDDNPTNVIIIREILKKENYRNFITAASAKEMLKLLGIGSENEEKRSRQSDIDLILLD 60 LIVDDNP N+ +I +ILK+ Y + ++ SA+E+ + + G ++ SR ++IDLILLD Sbjct: 4 LIVDDNPVNIFVIEKILKQAGYHDLVSLNSAQELFEYIQFGKDS----SRHNEIDLILLD 59 Query: 61 MMMPEMDGIEACRVVQQHEHLRDIPIIMVTAVGDSKKLAEALDAGAVDYVTKPINKVELM 120 +MMPE+DG+E CR +Q+ E +DIPII VTA+ D+ KLAEALD GA+DY+TKPINKVEL+ Sbjct: 60 IMMPEIDGLEVCRRLQKEEKFKDIPIIFVTALEDANKLAEALDMGAMDYITKPINKVELL 119 Query: 121 ARIRLALRLKREKDWHVERDQRIQDELKLAALVQNAVLSLPLKDEAFEVHAIYQPSFELA 180 AR+R+ALRLK E +WH E+++ +++EL LA VQ +LS PL+++ ++ A Y PSF+LA Sbjct: 120 ARMRVALRLKSELNWHKEQEENLRNELDLATQVQRNLLSSPLREDHIKIEASYLPSFKLA 179 Query: 181 GDLYAWYPLGDGRYAVILLDMMGHGISSSLFCMFLASVLKDTVTTYVQPEKVIQELNRRF 240 GD+Y WY + + RY +ILLD+MGHGIS+SL CMF++SVL++T+ + PE VI+ELN+ Sbjct: 180 GDMYYWYKIDENRYGIILLDVMGHGISASLVCMFISSVLRETIKCLIDPELVIKELNKYM 239 Query: 241 NQLYIEKQLVQYYFTAIYLVIDTRLKRIDYVNAGHPPGLFFEGGAAKPVLLESNCHPVGL 300 L+ + + YYFTAIYLV+DT + I+YVNAGHP G A L +C VG Sbjct: 240 TLLHNDNDNIPYYFTAIYLVVDTEKRTIEYVNAGHPSGYVLVDEANVVELNRGSC-AVGF 298 Query: 301 FDSIEIQPQTLTFEDEGHLVLYTDGLLEMA---EGGQEEQLEFMTSHLNGGHEWLEEPMR 357 FD I+++ + FE +VL+TDG+LE E EE+L T G LEE + Sbjct: 299 FDEIKVEKTVIPFEKNAQIVLFTDGVLEAIANDEFESEEKLRAFTERKWGD---LEEEIE 355 Query: 358 AAFFNEAPNQERDDDKCLVWI 378 F+ E + + DD CL+ I Sbjct: 356 -GFYKEEQKKTQSDDMCLIMI 375 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,324,915,921 Number of extensions: 97028569 Number of successful extensions: 308027 Number of sequences better than 1.0e-05: 19177 Number of HSP's gapped: 308491 Number of HSP's successfully gapped: 19306 Length of query: 387 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 249 Effective length of database: 1,760,596,133 Effective search space: 438388437117 Effective search space used: 438388437117 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)