BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0013.p
         (112 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KDJ5.1 B3KDJ5_9BACI Anti-sigma factor antagonist                    164   3e-39
B1D846.1 B1D846_9BACL Anti-sigma factor antagonist                    105   1e-21
B4BPD4.1 B4BPD4_9BACI Anti-sigma factor antagonist                    102   1e-20
Q5KUC9.1 Q5KUC9_GEOKA Anti-sigma factor antagonist                    100   6e-20
C3IZA9.1 C3IZA9_9BACI Anti-sigma-factor antagonist                     99   8e-20

>B3KDJ5.1 B3KDJ5_9BACI Anti-sigma factor antagonist
          Length = 107

 Score =  164 bits (415), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 93/105 (88%)

Query: 1   MNTNKSEKFHTRTETEGNVSTVYLIGELDLSVAPDFRLVMEPLVGDTGLDLVINLKELRY 60
           MNT  ++KF+ +T+    V TV+L GELDLSVAPDFRLVMEPLVG++ +DL++N+K++ Y
Sbjct: 1   MNTKTNDKFNAKTQMNEGVCTVFLSGELDLSVAPDFRLVMEPLVGNSEVDLIVNMKDMTY 60

Query: 61  IDSTGIGILLSILKARHGMDVKFSVEEVPPQIQKLFDMTGISKFF 105
           IDSTGIGILLSILKARHGM+ +F+VEEVPPQIQKLFDMTGI+KFF
Sbjct: 61  IDSTGIGILLSILKARHGMEARFAVEEVPPQIQKLFDMTGIAKFF 105


>B1D846.1 B1D846_9BACL Anti-sigma factor antagonist
          Length = 108

 Score =  105 bits (262), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 72/102 (70%)

Query: 5   KSEKFHTRTETEGNVSTVYLIGELDLSVAPDFRLVMEPLVGDTGLDLVINLKELRYIDST 64
           KS++F    E   +   + L GELDLSV    R  +EPL+  T   LV+NL++L+YIDST
Sbjct: 2   KSQQFQIEQEETNDSYILSLGGELDLSVVTQLRAALEPLMERTDRGLVLNLRDLKYIDST 61

Query: 65  GIGILLSILKARHGMDVKFSVEEVPPQIQKLFDMTGISKFFA 106
           GIGI++S+LK R G++  FSV+++PP IQ+LFD+TGIS + +
Sbjct: 62  GIGIIVSVLKYRDGINAPFSVQDIPPSIQRLFDLTGISGYLS 103


>B4BPD4.1 B4BPD4_9BACI Anti-sigma factor antagonist
          Length = 116

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 72/105 (68%)

Query: 7   EKFHTRTETEGNVSTVYLIGELDLSVAPDFRLVMEPLVGDTGLDLVINLKELRYIDSTGI 66
           ++FH   + + +   VY+ GELDL+ A  F+  +EPL  D    LVI+L EL YIDSTGI
Sbjct: 4   KRFHIVHDEQPDRHMVYIKGELDLAAAEQFQRAVEPLANDATKLLVIHLDELTYIDSTGI 63

Query: 67  GILLSILKARHGMDVKFSVEEVPPQIQKLFDMTGISKFFAPQENS 111
           G+L+++LK R     +F++E VPP++Q+LFD+TG+S FF+   ++
Sbjct: 64  GMLVALLKTRKKQGARFAIENVPPKVQRLFDLTGVSYFFSEANDT 108


>Q5KUC9.1 Q5KUC9_GEOKA Anti-sigma factor antagonist
          Length = 116

 Score =  100 bits (248), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 70/101 (69%)

Query: 6   SEKFHTRTETEGNVSTVYLIGELDLSVAPDFRLVMEPLVGDTGLDLVINLKELRYIDSTG 65
            ++F    + + +   VY+ GELDL+ A  F+  +EPL GD    LV+ L++L YIDSTG
Sbjct: 3   QKQFRLVHDEQPDRHVVYIKGELDLAAAEQFQRTVEPLAGDASKPLVLRLEDLTYIDSTG 62

Query: 66  IGILLSILKARHGMDVKFSVEEVPPQIQKLFDMTGISKFFA 106
           IG+ +++LK RH +   F++E VPP++++LFD+TG+S FF+
Sbjct: 63  IGMFVALLKTRHQLGAPFAIENVPPKVRRLFDLTGVSYFFS 103


>C3IZA9.1 C3IZA9_9BACI Anti-sigma-factor antagonist
          Length = 116

 Score = 99.4 bits (246), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 70/105 (66%)

Query: 7   EKFHTRTETEGNVSTVYLIGELDLSVAPDFRLVMEPLVGDTGLDLVINLKELRYIDSTGI 66
           ++FH   + + +   VY+ GELDL+ A  F+  +EPL  D    LVI L+EL YIDSTGI
Sbjct: 4   KRFHIVHDEQPDRHVVYIKGELDLATAEQFQRAVEPLAHDASKPLVIRLEELSYIDSTGI 63

Query: 67  GILLSILKARHGMDVKFSVEEVPPQIQKLFDMTGISKFFAPQENS 111
           G+ +++LK R   +  F +E VPP++++LFD+TG+S FF+  + +
Sbjct: 64  GMFVALLKTRKKQEAPFMIENVPPKVKRLFDLTGVSYFFSEMDQT 108


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 649,160,789
Number of extensions: 24186998
Number of successful extensions: 51992
Number of sequences better than 1.0e-05: 210
Number of HSP's gapped: 52152
Number of HSP's successfully gapped: 210
Length of query: 112
Length of database: 3,060,696,203
Length adjustment: 79
Effective length of query: 33
Effective length of database: 2,316,436,018
Effective search space: 76442388594
Effective search space used: 76442388594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)