BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0012.p (127 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDJ4.1 B3KDJ4_9BACI ATP-binding region ATPase domain protein 191 1e-47 B4BPD5.1 B4BPD5_9BACI Putative anti-sigma regulatory factor, ser... 134 3e-30 C3IZB0.1 C3IZB0_9BACI Putative anti-sigma regulatory factor, ser... 134 3e-30 B7Y781.1 B7Y781_9BACI Putative anti-sigma regulatory factor, ser... 134 3e-30 A4ITQ4.1 A4ITQ4_GEOTN Putative sigma-B regulator 134 3e-30 >B3KDJ4.1 B3KDJ4_9BACI ATP-binding region ATPase domain protein Length = 149 Score = 191 bits (486), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 95/127 (74%), Positives = 113/127 (88%), Gaps = 1/127 (0%) Query: 1 LNLYGIASKMGFTYEDIEDMKVAVSEACNNSVLYAYGQEDGLVDVIFEVGSSALSITVKD 60 LNLYGIASKMGF+YE+IEDMKVAVSEACNNSVLYAY QE G+V+V+F+V +LSITV+D Sbjct: 24 LNLYGIASKMGFSYEEIEDMKVAVSEACNNSVLYAYSQEGGMVEVLFQVTGESLSITVRD 83 Query: 61 EGESFDGMDASGERMTLHDKELNDVQVGGLGFYLMQALMDDVSVVSEAGKGTVVTLTKRL 120 EGESFD + A G+R TLHDK+L++VQ+GGLGFYLM+ALMD+VSV ++AGKGT VTLTKRL Sbjct: 84 EGESFDSVGAVGDR-TLHDKDLSEVQIGGLGFYLMEALMDEVSVTNQAGKGTEVTLTKRL 142 Query: 121 NFSEEKV 127 SEE V Sbjct: 143 ARSEEPV 149 >B4BPD5.1 B4BPD5_9BACI Putative anti-sigma regulatory factor, serine/threonine protein kinase EC=2.7.11.1 Length = 162 Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 65/118 (55%), Positives = 87/118 (73%), Gaps = 2/118 (1%) Query: 1 LNLYGIASKMGFTYEDIEDMKVAVSEACNNSVLYAYGQEDGLVDVIFEVGSSALSITVKD 60 L LYG+A+KMGF+YE+IEDMKVAVSEACNN+VL+AY G++ + FE+ + AL+I +KD Sbjct: 24 LTLYGLAAKMGFSYEEIEDMKVAVSEACNNAVLHAYNGRRGMIHLRFEMSADALAIVIKD 83 Query: 61 EGESFDGMDASGERMTLHDKELNDVQVGGLGFYLMQALMDDVSVVSEAGKGTVVTLTK 118 EG+ FD + + L K + DV++GGLG +LM+ALMDDVSV + GT V LTK Sbjct: 84 EGKGFDYKQVAKQAAPLSAKPIEDVKIGGLGLFLMEALMDDVSVTT--ADGTEVRLTK 139 >C3IZB0.1 C3IZB0_9BACI Putative anti-sigma regulatory factor, serine/threonine protein kinase EC=2.7.11.1 Length = 162 Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 66/118 (55%), Positives = 88/118 (74%), Gaps = 2/118 (1%) Query: 1 LNLYGIASKMGFTYEDIEDMKVAVSEACNNSVLYAYGQEDGLVDVIFEVGSSALSITVKD 60 L LYG+A+KMGF+YE+IEDMKVAVSEACNN+VL+AY G++ ++FE+ + ALSI +KD Sbjct: 24 LTLYGLAAKMGFSYEEIEDMKVAVSEACNNAVLHAYNGRGGVIHLLFEMRADALSIIIKD 83 Query: 61 EGESFDGMDASGERMTLHDKELNDVQVGGLGFYLMQALMDDVSVVSEAGKGTVVTLTK 118 EG+ FD + + L K L DV+ GGLG +LM+ALMDDV+V ++ GT V LTK Sbjct: 84 EGKGFDYKRVAKQAAPLSAKPLEDVKAGGLGLFLMEALMDDVTVTTKG--GTEVRLTK 139 >B7Y781.1 B7Y781_9BACI Putative anti-sigma regulatory factor, serine/threonine protein kinase EC=2.7.11.1 Length = 162 Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 66/118 (55%), Positives = 88/118 (74%), Gaps = 2/118 (1%) Query: 1 LNLYGIASKMGFTYEDIEDMKVAVSEACNNSVLYAYGQEDGLVDVIFEVGSSALSITVKD 60 L LYG+A+KMGF+YE+IEDMKVAVSEACNN+VL+AY G++ ++FE+ + ALSI +KD Sbjct: 24 LTLYGLAAKMGFSYEEIEDMKVAVSEACNNAVLHAYNGRGGVIHLLFEMRADALSIIIKD 83 Query: 61 EGESFDGMDASGERMTLHDKELNDVQVGGLGFYLMQALMDDVSVVSEAGKGTVVTLTK 118 EG+ FD + + L K L DV+ GGLG +LM+ALMDDV+V ++ GT V LTK Sbjct: 84 EGKGFDYKRVAKQAAPLSAKPLEDVKAGGLGLFLMEALMDDVTVTTKG--GTEVRLTK 139 >A4ITQ4.1 A4ITQ4_GEOTN Putative sigma-B regulator Length = 159 Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 65/118 (55%), Positives = 87/118 (73%), Gaps = 2/118 (1%) Query: 1 LNLYGIASKMGFTYEDIEDMKVAVSEACNNSVLYAYGQEDGLVDVIFEVGSSALSITVKD 60 L LYG+A+KMGF+YE+IEDMKVAVSEACNN+VL+AY G++ + FE+ + AL+I +KD Sbjct: 21 LTLYGLAAKMGFSYEEIEDMKVAVSEACNNAVLHAYNGRRGMIHLRFEMSADALAIVIKD 80 Query: 61 EGESFDGMDASGERMTLHDKELNDVQVGGLGFYLMQALMDDVSVVSEAGKGTVVTLTK 118 EG+ FD + + L K + DV++GGLG +LM+ALMDDVSV + GT V LTK Sbjct: 81 EGKGFDYKQVAKQAAPLSAKPIEDVKIGGLGLFLMEALMDDVSVTT--ADGTEVRLTK 136 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.133 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 698,301,894 Number of extensions: 25930368 Number of successful extensions: 54993 Number of sequences better than 1.0e-05: 360 Number of HSP's gapped: 54700 Number of HSP's successfully gapped: 360 Length of query: 127 Length of database: 3,060,696,203 Length adjustment: 92 Effective length of query: 35 Effective length of database: 2,193,962,823 Effective search space: 76788698805 Effective search space used: 76788698805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 126 (53.1 bits)