BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0009.p
         (167 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KDJ0.1 B3KDJ0_9BACI Putative uncharacterized protein                107   4e-22

>B3KDJ0.1 B3KDJ0_9BACI Putative uncharacterized protein
          Length = 136

 Score =  107 bits (267), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 85/166 (51%), Gaps = 33/166 (19%)

Query: 1   MNKAETEYPVESGSTFFKGVXXXXXXXXXXXXXXXPKPGREMRSDLSEKFSTATDKTKEV 60
           MN AE EYPV+SGSTFFKG                PKPGRE+R DLSEK S  +DKTKEV
Sbjct: 1   MNNAEQEYPVQSGSTFFKGAFIGALVGAAAALLFAPKPGRELRGDLSEKLSMVSDKTKEV 60

Query: 61  AGVVTDKTKSIAATVGEKATDLASTVSAKASDIFTTVNDSKQQIAATLSETGKKIGDTVG 120
                      A TVG+KA++LA TV +KASD+  TVN+ +Q I +++ E    +     
Sbjct: 61  -----------AYTVGDKASELAKTVGSKASDVMATVNEGRQSIMSSVKEASADV----- 104

Query: 121 XXXXXXXXXXXXXXXXXXEEASASSKDIADTANDAKEEVKASYKSS 166
                              E S++SKD+ D A D   EV    K++
Sbjct: 105 -----------------SSEVSSASKDVKDKAMDTSSEVSREMKTT 133


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.299    0.115    0.290 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 594,151,790
Number of extensions: 14500703
Number of successful extensions: 41755
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 41793
Number of HSP's successfully gapped: 2
Length of query: 167
Length of database: 3,060,696,203
Length adjustment: 125
Effective length of query: 42
Effective length of database: 1,883,069,328
Effective search space: 79088911776
Effective search space used: 79088911776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 126 (53.1 bits)