BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0006.p (435 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA86.1 B3KA86_9BACI Binding-protein-dependent transport system... 487 e-136 B1DAP8.1 B1DAP8_9BACL Binding-protein-dependent transport system... 478 e-133 C5D6S7.1 C5D6S7_9BACI Binding-protein-dependent transport system... 427 e-117 B0K7T4.1 B0K7T4_THEP3 Binding-protein-dependent transport system... 377 e-102 B9DSG4.1 B9DSG4_STRU0 Putative maltose/maltodextrin ABC transpor... 344 9e-93 >B3KA86.1 B3KA86_9BACI Binding-protein-dependent transport systems inner membrane component Length = 437 Score = 487 bits (1254), Expect = e-136, Method: Compositional matrix adjust. Identities = 248/432 (57%), Positives = 317/432 (73%), Gaps = 1/432 (0%) Query: 4 KTGAAVLSAVIPGLGQMYNRQWLKGLAFLLTGMAWFYFMTHGLTGHLRGLITLGELPSRM 63 + AAVLSA+ GLGQ+YNRQW+KG+ L+ G+ Y+ + L + G++TLGE S + Sbjct: 5 RITAAVLSAICMGLGQLYNRQWIKGVILLIVGVFSLYYFINNLGDAIWGMVTLGEQGSHL 64 Query: 64 VKVGKMTRMVEGDHSIFMXXXXXXXXXXXXXXXXXXXXXXRDAFMVGAARARQEQIRSFG 123 KV +T+MV GDHSI + ++A+ G R + +F Sbjct: 65 EKVNGLTQMVAGDHSINLLIEGLITLIMFALFLIGYYANIKNAYNAGKLREKGVTPNNFR 124 Query: 124 QSLKYMGRRHFAYLVLAIPLTAIVFLTILPLVFSVLLAFTNYADPI-LPPANLVDWVGFG 182 Q+L Y+ FA L +P I+F T++P++F VLLAFTNY+ P LPPA+LVDWVGF Sbjct: 125 QTLYYIFEWKFAQSFLTLPAIGILFFTVMPIIFMVLLAFTNYSAPNNLPPASLVDWVGFK 184 Query: 183 NFKKMLSLDVWSTTFGGILTWTLCWAVIATVTTYIGGVLVAVLIHQPRVRFKKLWRTLLI 242 F +++L WS TF G+LTWT+ WAV+ATVTTY GGVLVA+LI Q +RFK +WR +LI Sbjct: 185 TFTNLVALKSWSHTFFGVLTWTIIWAVLATVTTYFGGVLVALLIQQKGIRFKGVWRVILI 244 Query: 243 VPFAIPNMISLLVMRNMFNNQFGPVNKYLGMIGLNGLPWLTDPFWAKVTVILANMWIGIP 302 +P+AIP +ISLLVMRNMFN QFGP+N+YL GL GLPWLTDP WAKVTVI+ NMW+GIP Sbjct: 245 IPYAIPQLISLLVMRNMFNGQFGPINQYLRYFGLEGLPWLTDPVWAKVTVIVVNMWVGIP 304 Query: 303 VTMILAFGVLTTIPRDLYEAAEVDGAGSAHKFRMITLPMVLFATAPILIMQFAGNINSFN 362 V+M+L VLTTIP+DLYEAA+VDGA KF++ITLPM+LF+TAP+LI QFAGNIN+FN Sbjct: 305 VSMLLVMSVLTTIPKDLYEAADVDGATGFQKFKIITLPMILFSTAPVLITQFAGNINNFN 364 Query: 363 VIYLMTNGEPVNPHYQYAGDTDLLVTWLYKLALNQSQYSFASVIGIIIFLLVATFSIWSY 422 +I+L+TNG PV YQYAG TDLLVTWLYKL L+Q +YS AS IGIIIF+++ATFSI++Y Sbjct: 365 LIFLLTNGNPVVGDYQYAGATDLLVTWLYKLTLDQQRYSMASAIGIIIFMIIATFSIYNY 424 Query: 423 RRTRSYKEEDMI 434 RRTRS+KEEDMI Sbjct: 425 RRTRSFKEEDMI 436 >B1DAP8.1 B1DAP8_9BACL Binding-protein-dependent transport systems inner membrane component Length = 435 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 254/429 (59%), Positives = 320/429 (74%), Gaps = 1/429 (0%) Query: 7 AAVLSAVIPGLGQMYNRQWLKGLAFLLTGMAWFYFMTHGLTGHLRGLITLGELPSRMVKV 66 +A+LSAV GLGQ+YNRQ++KG+ LLT A + L L G+ TLG+ PS+MVKV Sbjct: 6 SAILSAVSMGLGQLYNRQYMKGILLLLTEAAALVYFIPRLVHDLWGIWTLGDTPSKMVKV 65 Query: 67 GKMTRMVEGDHSIFMXXXXXXXXXXXXXXXXXXXXXXRDAFMVGAARARQEQIRSFGQSL 126 GK+ + V+GDHSIF+ RDA+ GA R + Q +F +S+ Sbjct: 66 GKVYQTVKGDHSIFLMINGLITVLVLALFITIYIMNIRDAYRTGANRDQGIQAATFRESV 125 Query: 127 KYMGRRHFAYLVLAIPLTAIVFLTILPLVFSVLLAFTNYADPI-LPPANLVDWVGFGNFK 185 +Y+ R F +L+L IP ++FLTI+P+VF +LL+FTNY+ P +PPA LVDWVGF FK Sbjct: 126 RYVWDRKFPHLLLTIPGLGVLFLTIMPIVFMILLSFTNYSLPQHIPPAKLVDWVGFNTFK 185 Query: 186 KMLSLDVWSTTFGGILTWTLCWAVIATVTTYIGGVLVAVLIHQPRVRFKKLWRTLLIVPF 245 +L+L WS TF G+ TWT+ WAV+AT T Y GG+LVA+LI Q V+FKKLWRTL I+P+ Sbjct: 186 DLLTLKSWSRTFFGVFTWTIIWAVLATATCYFGGLLVALLIEQKDVKFKKLWRTLFILPY 245 Query: 246 AIPNMISLLVMRNMFNNQFGPVNKYLGMIGLNGLPWLTDPFWAKVTVILANMWIGIPVTM 305 AIP +ISLLVMRN+FN QFGP+N+YL G LPWLTDP WAK T IL NMW+GIPV+M Sbjct: 246 AIPQLISLLVMRNLFNGQFGPINQYLSYFGFGKLPWLTDPTWAKATAILVNMWVGIPVSM 305 Query: 306 ILAFGVLTTIPRDLYEAAEVDGAGSAHKFRMITLPMVLFATAPILIMQFAGNINSFNVIY 365 +L GVLT IP+DLYEAA+VDGA KFR++TLP VLFATAPILI QFAGNIN+FN+I+ Sbjct: 306 VLILGVLTAIPKDLYEAADVDGASGYQKFRIVTLPFVLFATAPILITQFAGNINNFNLIF 365 Query: 366 LMTNGEPVNPHYQYAGDTDLLVTWLYKLALNQSQYSFASVIGIIIFLLVATFSIWSYRRT 425 L+TNGEP+N +YQYAG TDLLVTWLYKL LN SQ++ AS IGIIIF+++ATFSI +YRRT Sbjct: 366 LLTNGEPLNGNYQYAGSTDLLVTWLYKLTLNNSQFNMASAIGIIIFIIIATFSIINYRRT 425 Query: 426 RSYKEEDMI 434 +S+KEEDMI Sbjct: 426 KSFKEEDMI 434 >C5D6S7.1 C5D6S7_9BACI Binding-protein-dependent transport systems inner membrane component Length = 447 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 208/433 (48%), Positives = 298/433 (68%), Gaps = 4/433 (0%) Query: 3 KKTGAAVLSAVIPGLGQMYNRQWLKGLAFLLTGMAWFYFMTHGLTGHLRGLITLGELPSR 62 K + AAVLS + GLGQ+YNRQ++KG+ + L + F+T+ + L GLITLGE ++ Sbjct: 18 KASTAAVLSFLFMGLGQIYNRQYIKGILYALVEIYVIVFLTNPIVNGLWGLITLGE-QAQ 76 Query: 63 MVKVGKMTRMVEGDHSIFMXXXXXXXXXXXXXXXXXXXXXXRDAFMVGAARARQEQIRSF 122 + + G++ ++EGDHSIF+ RDA+ G E++ SF Sbjct: 77 VRRRGRV--VIEGDHSIFLMIEGLIIVIVLVIFLLFYIYNIRDAYKTGKLHETGEKVNSF 134 Query: 123 GQSLKYMGRRHFAYLVLAIPLTAIVFLTILPLVFSVLLAFTNYADP-ILPPANLVDWVGF 181 +SLK +AY++L +FL++LPL F +L+AFTN++ P LPP NLVDWVGF Sbjct: 135 IESLKKSWEYGYAYILLTPAAIFTLFLSVLPLTFGILIAFTNFSSPNHLPPKNLVDWVGF 194 Query: 182 GNFKKMLSLDVWSTTFGGILTWTLCWAVIATVTTYIGGVLVAVLIHQPRVRFKKLWRTLL 241 NF + L WS TF GI TW + WA++AT TT+ G+ A++I+ +VR K++WRT+ Sbjct: 195 QNFIDLFRLQAWSKTFYGIATWNIIWAILATFTTFFVGMFFALIINHNKVRLKRMWRTIF 254 Query: 242 IVPFAIPNMISLLVMRNMFNNQFGPVNKYLGMIGLNGLPWLTDPFWAKVTVILANMWIGI 301 I+P+A+P IS+LV RN+FN QFGP+N+YL +G++ +PWL+DPFWAKV ++ N+W+G Sbjct: 255 ILPWAVPQFISILVFRNIFNGQFGPLNQYLSTLGIDPIPWLSDPFWAKVALVTINIWLGF 314 Query: 302 PVTMILAFGVLTTIPRDLYEAAEVDGAGSAHKFRMITLPMVLFATAPILIMQFAGNINSF 361 P M L GVLT I ++LYEAAEVDGA + KFR IT P++++ T+P+LIM FAGNIN+F Sbjct: 315 PFWMALIAGVLTNIDKELYEAAEVDGASTFQKFRSITFPLLMYYTSPLLIMSFAGNINNF 374 Query: 362 NVIYLMTNGEPVNPHYQYAGDTDLLVTWLYKLALNQSQYSFASVIGIIIFLLVATFSIWS 421 NVIYL T G P + Y YAG TDLL++W+YKL LN SQ+ ASV+ I+IF++VA FSIW+ Sbjct: 375 NVIYLFTQGGPADGKYTYAGSTDLLISWIYKLTLNHSQFYMASVLSILIFIVVAVFSIWN 434 Query: 422 YRRTRSYKEEDMI 434 +R+T+++KEE+M+ Sbjct: 435 FRQTKAFKEEEMM 447 >B0K7T4.1 B0K7T4_THEP3 Binding-protein-dependent transport systems inner membrane component Length = 429 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/439 (45%), Positives = 280/439 (63%), Gaps = 16/439 (3%) Query: 1 MPKKTGAAVLSAVIPGLGQMYNRQWLKGLAFLLTGMAWFYFMTHGLTGHLR----GLITL 56 M + AA+LS + GLGQ+YNR+ KG+ F A + + R GLITL Sbjct: 1 MKRSKRAALLSILFMGLGQLYNREIAKGILF-----AIVNIIVLINIPYFRYAYWGLITL 55 Query: 57 GELPSRMVKVGKMTRMVEGDHSIFMXXXXXXXXXXXXXXXXXXXXXXRDAFMVGAARARQ 116 GE P V + EGDHSIF+ DAF G A + Sbjct: 56 GEQPLHYVN-----GIAEGDHSIFLLIQGIIAVLVTLLIILIYVLNIIDAFKTGEAIEQG 110 Query: 117 EQIRSFGQSLKYMGRRHFAYLVLAIPLTAIVFLTILPLVFSVLLAFTNYADP-ILPPANL 175 E+ + ++Y+ ++F YL L+ I+F T+LP++F++ +AFTNY+ P LPP NL Sbjct: 111 EKPMGIVKFVRYVSHKYFPYLSLSPAFVLILFFTLLPILFTISIAFTNYSAPNHLPPRNL 170 Query: 176 VDWVGFGNFKKMLSLDVWSTTFGGILTWTLCWAVIATVTTYIGGVLVAVLIHQPRVRFKK 235 VDWVG NFK +L+L +W TF G+ WT+ WA++A++T+Y GG+L+A+L++ V+ KK Sbjct: 171 VDWVGVTNFKNLLNLKIWKNTFIGVGIWTIIWALLASLTSYFGGLLLALLVNSGDVQLKK 230 Query: 236 LWRTLLIVPFAIPNMISLLVMRNMFNNQFGPVNKYLGMIGLNGLPWLTDPFWAKVTVILA 295 WRT+ I+P+AIP IS+L MR MF GPVN +L +G +PWLT+P AKV +IL Sbjct: 231 FWRTIYILPYAIPGFISILTMRLMFTG-LGPVNNFLVKLGFERMPWLTNPTMAKVVLILV 289 Query: 296 NMWIGIPVTMILAFGVLTTIPRDLYEAAEVDGAGSAHKFRMITLPMVLFATAPILIMQFA 355 N+W+G P M L G LT IP DLYEAA++DGA KFR ITLP+VL AT P+LI+ F Sbjct: 290 NIWLGAPYFMALMSGTLTNIPGDLYEAADIDGATPYQKFRKITLPLVLHATMPLLILSFT 349 Query: 356 GNINSFNVIYLMTNGEPVNPHYQYAGDTDLLVTWLYKLALNQSQYSFASVIGIIIFLLVA 415 N N+F +IYL+T+G P NP Y+YAG TD+L++W+YKL L Q+QY+ A+VI II+F++VA Sbjct: 350 HNFNNFTMIYLLTSGGPANPAYRYAGHTDILISWIYKLTLEQNQYNMAAVISIIMFIVVA 409 Query: 416 TFSIWSYRRTRSYKEEDMI 434 T S +++ RT+S++EED+I Sbjct: 410 TISAFTFSRTKSFREEDLI 428 >B9DSG4.1 B9DSG4_STRU0 Putative maltose/maltodextrin ABC transport system permease protein Length = 453 Score = 344 bits (883), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 179/427 (41%), Positives = 263/427 (61%), Gaps = 8/427 (1%) Query: 10 LSAVIPGLGQMYNRQWLKGLAFLLTGMAWFYFMTHGLTGHLRGLITLGE----LPSRMVK 65 LSA+I G + N+Q++KG FL++ +A+ + ++GLITLG + ++++ Sbjct: 25 LSAIIMGFANLVNKQFIKGTLFLISEIAFLIAFVTQIIPAIKGLITLGTQTQGMVTKVID 84 Query: 66 VGKMTRMVEGDHSIFMXXXXXXXXXXXXXXXXXXXXXXRDAFMVGAARARQEQIRSFGQS 125 KM V+GD+S+ M + A + + + E+I SF Sbjct: 85 GIKMQVAVDGDNSMLMLIFGLASLIFCLVFAYIYWCNLKSASHLFELKNKGEKIPSFKDD 144 Query: 126 LKYMGRRHFAYLVLAIPLTAIVFLTILPLVFSVLLAFTNYADPILPPANLVDWVGFGNFK 185 K + F ++A+PL ++ TILPL++ + LAFTN+ LPP +L DWVGF NF Sbjct: 145 FKTLANGRFHMTLMAVPLIGVLLFTILPLIYMICLAFTNFDHNHLPPKSLFDWVGFTNFG 204 Query: 186 KMLSLDVWSTTFGGILTWTLCWAVIATVTTYIGGVLVAVLIHQPRVRFKKLWRTLLIVPF 245 + S + + TF + +WTL WAV AT+T + G+++A+LI+ ++FKK+WRT+ ++ Sbjct: 205 NIFSGRM-ADTFFPVFSWTLIWAVFATITNFFFGIILALLINTKGLKFKKMWRTIFVITI 263 Query: 246 AIPNMISLLVMRNMFNNQFGPVNKYLGMIGL--NGLPWLTDPFWAKVTVILANMWIGIPV 303 A+P ISLL+MRN+ N++ GPVN L +GL + LP+L+DP WAK ++I NMWIGIP Sbjct: 264 AVPQFISLLIMRNLLNDE-GPVNALLHKLGLIHHSLPFLSDPIWAKFSIIFVNMWIGIPF 322 Query: 304 TMILAFGVLTTIPRDLYEAAEVDGAGSAHKFRMITLPMVLFATAPILIMQFAGNINSFNV 363 TM++A G++ +P + EAAE+DGA F+ IT P +L P LI QF GNIN+FNV Sbjct: 323 TMLIATGIIMNLPSEQIEAAEIDGASKFQVFKSITFPQILLIMTPNLIQQFIGNINNFNV 382 Query: 364 IYLMTNGEPVNPHYQYAGDTDLLVTWLYKLALNQSQYSFASVIGIIIFLLVATFSIWSYR 423 IYL+T G P N Y AG TDLLVTWLYKL + + Y+ ASV+GI+IF + A FS+ +Y Sbjct: 383 IYLLTGGGPTNSQYYQAGTTDLLVTWLYKLTVTAADYNLASVVGILIFAVSAIFSLLAYT 442 Query: 424 RTRSYKE 430 RT SYKE Sbjct: 443 RTASYKE 449 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,508,344,942 Number of extensions: 103997208 Number of successful extensions: 369055 Number of sequences better than 1.0e-05: 6127 Number of HSP's gapped: 362934 Number of HSP's successfully gapped: 6128 Length of query: 435 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 296 Effective length of database: 1,751,175,118 Effective search space: 518347834928 Effective search space used: 518347834928 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 133 (55.8 bits)