BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0005.p (278 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA87.1 B3KA87_9BACI Binding-protein-dependent transport system... 292 2e-77 B1DAP9.1 B1DAP9_9BACL Binding-protein-dependent transport system... 280 1e-73 C5D6S8.1 C5D6S8_9BACI Binding-protein-dependent transport system... 273 1e-71 A7GS38.1 A7GS38_BACCN Binding-protein-dependent transport system... 259 3e-67 Q81MM0.1 Q81MM0_BACAN Maltosaccharide ABC transporter, permease ... 258 3e-67 >B3KA87.1 B3KA87_9BACI Binding-protein-dependent transport systems inner membrane component Length = 280 Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 141/280 (50%), Positives = 195/280 (69%), Gaps = 2/280 (0%) Query: 1 MNRKPEEAAKTIGSYAXXXXXXXXXXXPAFWIVMSSFKTGNSLFSDTLIPRRMTLVHYQE 60 M K A + SY PA WIV++SF+ G SL+S +LIP TL HY+E Sbjct: 1 MGIKMRNAIRLTASYITLVIIAIGCIYPALWIVLASFRPGKSLYSKSLIPESFTLSHYKE 60 Query: 61 LFEQTKYL--QWFLNTLKVXXXXXXXXXXXXXXXXYAISRYRFAGRKSMLTAFLVLQMFP 118 LF +L W++NTLK+ YA+SR+RF GR++ L+ LVL MFP Sbjct: 61 LFTSQSFLFGTWYMNTLKIAVFSMIIGTILVLLTSYAVSRFRFKGRQNALSVILVLGMFP 120 Query: 119 GFMAMIAIYVLLNTLGLLNSHWALVLVYSSGSIITNVFVAKGFFDTIPKSLEDAARIDGA 178 GFM+MIA+Y+LLN+L LLN+H A+++VY++G+ + + KGF DTIP+SL++AA+IDGA Sbjct: 121 GFMSMIALYILLNSLDLLNTHAAMIIVYAAGAPLGGTLIMKGFLDTIPRSLDEAAKIDGA 180 Query: 179 SHMKVFLSIMMPLSKPMLTYASLMIFNGCFVDFIFADLILRTEEKRTLAVGLFRMVNQSN 238 ++ ++F I++PLSKPM+TY L +F G +VDFIFA L+LRT+E TLAVGL+ +VN + Sbjct: 181 TNFQIFRKIILPLSKPMITYMGLTLFVGPWVDFIFARLVLRTKENWTLAVGLWDLVNSTQ 240 Query: 239 STEFTLFAAGAVLVALPVTLLFIFLQRFLIDGLTAGAMKG 278 + FTLFAA +VL+ALP+TLLF+FLQR L+DG+TAGA KG Sbjct: 241 DSNFTLFAAASVLIALPITLLFVFLQRLLVDGMTAGASKG 280 >B1DAP9.1 B1DAP9_9BACL Binding-protein-dependent transport systems inner membrane component Length = 282 Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 136/267 (50%), Positives = 194/267 (72%), Gaps = 2/267 (0%) Query: 14 SYAXXXXXXXXXXXPAFWIVMSSFKTGNSLFSDTLIPRRMTLVHYQELFEQTKYL--QWF 71 SY PA W+++SSF+ G SL+SD+ IP+ TL HY ELF +L +W+ Sbjct: 16 SYVVLTLLAICCLYPALWVLLSSFRPGTSLYSDSFIPKSFTLSHYTELFHSKVFLYGRWY 75 Query: 72 LNTLKVXXXXXXXXXXXXXXXXYAISRYRFAGRKSMLTAFLVLQMFPGFMAMIAIYVLLN 131 LNTLK+ YA+SR+RF GRK++LT LVL MFPGFM+++ +Y+ L Sbjct: 76 LNTLKIAFLSMIFSTILSTMSMYALSRFRFKGRKTLLTTLLVLGMFPGFMSLVPVYIFLL 135 Query: 132 TLGLLNSHWALVLVYSSGSIITNVFVAKGFFDTIPKSLEDAARIDGASHMKVFLSIMMPL 191 L LL++H A+++VYS+GS++ N FV KGFFDTIP+SL+++ARIDGA+H+++F IM+PL Sbjct: 136 QLNLLDTHAAIIIVYSAGSVLMNGFVIKGFFDTIPRSLDESARIDGANHLQIFYRIMLPL 195 Query: 192 SKPMLTYASLMIFNGCFVDFIFADLILRTEEKRTLAVGLFRMVNQSNSTEFTLFAAGAVL 251 ++P+L Y +L F G +VDFIFA L+LR++E TLAVG++ +V+ ++ FT+FAAGAVL Sbjct: 196 ARPILIYVALTTFAGAWVDFIFARLVLRSKENWTLAVGMWDLVSSYQNSNFTMFAAGAVL 255 Query: 252 VALPVTLLFIFLQRFLIDGLTAGAMKG 278 +A+P+TLLF+FLQ+FL+ GLTAGA KG Sbjct: 256 IAVPITLLFVFLQKFLVQGLTAGASKG 282 >C5D6S8.1 C5D6S8_9BACI Binding-protein-dependent transport systems inner membrane component Length = 289 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 132/275 (48%), Positives = 186/275 (67%) Query: 4 KPEEAAKTIGSYAXXXXXXXXXXXPAFWIVMSSFKTGNSLFSDTLIPRRMTLVHYQELFE 63 K +EA T+ YA P WI + + G++L+S TL+P ++T+ HY L+ Sbjct: 15 KFKEAVVTVLIYAFLIISAILVLYPIVWIFIGALNPGDTLYSSTLMPEKITMKHYTHLWY 74 Query: 64 QTKYLQWFLNTLKVXXXXXXXXXXXXXXXXYAISRYRFAGRKSMLTAFLVLQMFPGFMAM 123 +T Y++WF NTL V YA SR+RF GR+ L A L+LQMFP FM M Sbjct: 75 ETDYVKWFKNTLFVATMNMILSTFLIVSSAYAFSRFRFPGRRQGLMAMLILQMFPSFMGM 134 Query: 124 IAIYVLLNTLGLLNSHWALVLVYSSGSIITNVFVAKGFFDTIPKSLEDAARIDGASHMKV 183 IAIY+LL +GLL++ W L+LVY+ GSI ++ KG+FD +P+SLE+AA+IDGASH + Sbjct: 135 IAIYILLLQIGLLDNLWGLILVYAGGSIPFGAWLVKGYFDGLPRSLEEAAKIDGASHTTI 194 Query: 184 FLSIMMPLSKPMLTYASLMIFNGCFVDFIFADLILRTEEKRTLAVGLFRMVNQSNSTEFT 243 F +MMPLS P+LT+ ++ F G ++DFIFA L+LR+ E +TLA+GLF MV +TEFT Sbjct: 195 FFKVMMPLSVPILTFIAINNFIGPWMDFIFARLVLRSNENKTLAIGLFEMVTGRGNTEFT 254 Query: 244 LFAAGAVLVALPVTLLFIFLQRFLIDGLTAGAMKG 278 FAAGA++VA+P+T+LF+ LQ+++I GL+AGA KG Sbjct: 255 TFAAGAIIVAIPITILFLLLQKYIIAGLSAGANKG 289 >A7GS38.1 A7GS38_BACCN Binding-protein-dependent transport systems inner membrane component Length = 280 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 129/280 (46%), Positives = 179/280 (63%), Gaps = 2/280 (0%) Query: 1 MNRKPEEAAKTIGSYAXXXXXXXXXXXPAFWIVMSSFKTGNSLFSDTLIPRRMTLVHYQE 60 MN K ++ + SY P WI+ SSF G+SL ++IP+ TL HY+E Sbjct: 1 MNIKRQKILRLSLSYFVIFMMCVIIFYPLLWIIGSSFNPGDSLSGSSIIPKNATLDHYRE 60 Query: 61 LF--EQTKYLQWFLNTLKVXXXXXXXXXXXXXXXXYAISRYRFAGRKSMLTAFLVLQMFP 118 L + + YL W+ NTLKV YA SRYRF GRK+ L FL+LQM P Sbjct: 61 LLNLDASNYLLWYKNTLKVSVLTMIFSVLSISFTAYAFSRYRFVGRKNGLLTFLILQMIP 120 Query: 119 GFMAMIAIYVLLNTLGLLNSHWALVLVYSSGSIITNVFVAKGFFDTIPKSLEDAARIDGA 178 F A+IA+Y+L GL+++H+AL+L+Y G+I N ++ KG+FDTIPK L+++AR+DGA Sbjct: 121 NFSALIALYILAQLTGLIDTHFALILIYVGGAIPMNTWLMKGYFDTIPKELDESARMDGA 180 Query: 179 SHMKVFLSIMMPLSKPMLTYASLMIFNGCFVDFIFADLILRTEEKRTLAVGLFRMVNQSN 238 H ++F I+MPL+KP++ +L F G F DFI A +ILRT E TLAVGL+ MV + Sbjct: 181 GHFRIFWQIIMPLAKPIIAVVALFTFIGPFTDFILASIILRTPENYTLAVGLYEMVAKKF 240 Query: 239 STEFTLFAAGAVLVALPVTLLFIFLQRFLIDGLTAGAMKG 278 EFT FAAG+VL+A+P+++LF+ LQ++ I GLTAG KG Sbjct: 241 GNEFTTFAAGSVLIAIPISILFLSLQKYFISGLTAGGTKG 280 >Q81MM0.1 Q81MM0_BACAN Maltosaccharide ABC transporter, permease protein Length = 280 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 130/280 (46%), Positives = 178/280 (63%), Gaps = 2/280 (0%) Query: 1 MNRKPEEAAKTIGSYAXXXXXXXXXXXPAFWIVMSSFKTGNSLFSDTLIPRRMTLVHYQE 60 MN K ++ + SY P WI+ SSF G+SL ++IP+ TL HY++ Sbjct: 1 MNIKRQKMLRLSLSYLVIFVMCAIIFYPLLWIIGSSFNPGDSLSGSSIIPQNATLDHYRK 60 Query: 61 LF--EQTKYLQWFLNTLKVXXXXXXXXXXXXXXXXYAISRYRFAGRKSMLTAFLVLQMFP 118 L E + YL W+ NTLKV YA SRYRF GRK+ L FL+LQM P Sbjct: 61 LLDLENSNYLLWYKNTLKVSVLTMIFSVLAISFTAYAFSRYRFVGRKNGLLTFLILQMIP 120 Query: 119 GFMAMIAIYVLLNTLGLLNSHWALVLVYSSGSIITNVFVAKGFFDTIPKSLEDAARIDGA 178 F A+IA+YVL GL+++H AL+L+Y G+I N ++ KG+FDTIPK L+++AR+DGA Sbjct: 121 NFAALIALYVLAQLTGLIDTHLALILIYVGGAIPMNTWLMKGYFDTIPKELDESARMDGA 180 Query: 179 SHMKVFLSIMMPLSKPMLTYASLMIFNGCFVDFIFADLILRTEEKRTLAVGLFRMVNQSN 238 H ++F I+MPL+KP++ +L F G F DFI A +ILRT E TLAVGL+ MV + Sbjct: 181 GHFRIFWQIIMPLAKPIVAVVALFTFIGPFTDFILASIILRTPENYTLAVGLYEMVAKKF 240 Query: 239 STEFTLFAAGAVLVALPVTLLFIFLQRFLIDGLTAGAMKG 278 EFT FAAG+VL+A+P+++LF+ LQ++ I GLTAG KG Sbjct: 241 GNEFTTFAAGSVLIAIPISILFLSLQKYFISGLTAGGTKG 280 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.140 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,254,021,431 Number of extensions: 41775305 Number of successful extensions: 159457 Number of sequences better than 1.0e-05: 5992 Number of HSP's gapped: 151344 Number of HSP's successfully gapped: 5992 Length of query: 278 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 144 Effective length of database: 1,798,280,193 Effective search space: 258952347792 Effective search space used: 258952347792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)