BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0002.p (192 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDI5.1 B3KDI5_9BACI Sporulation protein YyaC 200 5e-50 B1DH27.1 B1DH27_9BACL Sporulation protein YyaC 149 9e-35 Q5WAH0.1 Q5WAH0_BACSK Putative uncharacterized protein 123 1e-26 B7GMV3.1 B7GMV3_ANOFW Spore protease related protein 113 9e-24 B4AKC0.1 B4AKC0_BACPU YyaC 112 2e-23 >B3KDI5.1 B3KDI5_9BACI Sporulation protein YyaC Length = 179 Score = 200 bits (509), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 99/163 (60%), Positives = 122/163 (74%) Query: 22 RKKRDASGLIFFFREIASQHPPEQITFLCIGTDRSTGDALGPLTGSQLLEQGFPHVSGTM 81 + K L FF I+ +H I FLCIGTDRSTGDALGPLTGS+L+E GFP V GT+ Sbjct: 15 KAKMSGHELAGFFLGISRRHALGSIVFLCIGTDRSTGDALGPLTGSRLVEYGFPQVIGTL 74 Query: 82 PSPCDADNLEARIAEIPAGQIVIAVDACLGPPASLGYFLTADEPLRPAQSVGLNLPAVGH 141 P PCDA NLEA++ IP Q+VIA+DACLG +S+GYF ++ PL PAQSVG LPAVG Sbjct: 75 PEPCDAFNLEAKLQGIPEDQVVIAIDACLGQSSSVGYFFASEGPLAPAQSVGGKLPAVGD 134 Query: 142 YSLAAIVDVYGPRPYRTLQSTPLHRVMVMAKQIALAAAAGFGM 184 YS+AA+V+V+GP+PY TLQ T L++VM MA+QIA AAA FG+ Sbjct: 135 YSVAAVVNVHGPKPYWTLQVTSLYQVMGMAEQIAKQAAAAFGL 177 >B1DH27.1 B1DH27_9BACL Sporulation protein YyaC Length = 189 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 72/150 (48%), Positives = 101/150 (67%), Gaps = 3/150 (2%) Query: 29 GLIFFFREIASQHPP-EQITFLCIGTDRSTGDALGPLTGSQLLEQGFPHVSGTMPSPCDA 87 GL F +A +HP ++ FLCIGTDRSTGD+ GPL G++L E+G+P+V GT+ PCDA Sbjct: 15 GLQAFLAHVAGRHPDRSRVVFLCIGTDRSTGDSFGPLVGTKLEERGWPYVFGTLKQPCDA 74 Query: 88 DNLEARIAEIPAGQ--IVIAVDACLGPPASLGYFLTADEPLRPAQSVGLNLPAVGHYSLA 145 + + + ++IAVDACLG P S+G ++TA+ PL P Q+ G LPAVG YS+A Sbjct: 75 KRFAEALEQSAEREHAVIIAVDACLGKPLSVGKYITAEGPLTPGQATGARLPAVGDYSIA 134 Query: 146 AIVDVYGPRPYRTLQSTPLHRVMVMAKQIA 175 +V+ +PY TLQ+T L+ VM MA+ +A Sbjct: 135 GVVNASSHKPYMTLQTTSLYTVMQMAETVA 164 >Q5WAH0.1 Q5WAH0_BACSK Putative uncharacterized protein Length = 210 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/150 (44%), Positives = 88/150 (58%), Gaps = 5/150 (3%) Query: 36 EIASQHPPEQITFLCIGTDRSTGDALGPLTGSQLLEQGFP--HVSGTMPSPCDADNLEAR 93 E + +CIGTDRSTGD+LGPL G+ L Q HV GT+ P A N+E R Sbjct: 34 EFCKHRGNRDLLLICIGTDRSTGDSLGPLVGNLLEGQNLNQFHVHGTLAEPIHAANMEKR 93 Query: 94 IAEIPAGQ---IVIAVDACLGPPASLGYFLTADEPLRPAQSVGLNLPAVGHYSLAAIVDV 150 +A I V+A+DACLG A++GY + EPL+P ++G NLP +G L IV+V Sbjct: 94 LASIYKKHPNAFVVALDACLGKTANVGYITLSAEPLKPGAAMGKNLPEIGDICLTGIVNV 153 Query: 151 YGPRPYRTLQSTPLHRVMVMAKQIALAAAA 180 G + LQST LH VM MA++I+ A AA Sbjct: 154 GGLMDFYMLQSTRLHVVMSMAQKISKAVAA 183 >B7GMV3.1 B7GMV3_ANOFW Spore protease related protein Length = 232 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 62/135 (45%), Positives = 81/135 (60%), Gaps = 5/135 (3%) Query: 46 ITFLCIGTDRSTGDALGPLTGSQLLEQGFP--HVSGTMPSPCDADNLEARIAEIPAGQ-- 101 I LCIGTDRSTGD+LGPL G+ L ++G HV GT+ P A NLE R+ +I Sbjct: 68 IVILCIGTDRSTGDSLGPLVGTMLEQKGILPFHVYGTLKDPIHAVNLEDRLKDIQQQHKH 127 Query: 102 -IVIAVDACLGPPASLGYFLTADEPLRPAQSVGLNLPAVGHYSLAAIVDVYGPRPYRTLQ 160 +IAVDACLG ++G P++P +V NLP+VG + IV+V G + LQ Sbjct: 128 AFIIAVDACLGRVKNIGMVTIEKGPIKPGAAVNKNLPSVGDAHITGIVNVSGFMEFFVLQ 187 Query: 161 STPLHRVMVMAKQIA 175 +T LH VM MA+ IA Sbjct: 188 NTRLHLVMSMAETIA 202 >B4AKC0.1 B4AKC0_BACPU YyaC Length = 208 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 87/151 (57%), Gaps = 8/151 (5%) Query: 30 LIFFFREIASQHPPEQITFLCIGTDRSTGDALGPLTGSQL--LEQGFPHVSGTMPSPCDA 87 ++F + A + P + +CIGTDRSTGD+LGPL G++L L+ HV GT+ P A Sbjct: 31 ILFSHLQKAGKRP---VAIVCIGTDRSTGDSLGPLVGTKLSGLDLKKLHVYGTLSDPVHA 87 Query: 88 DNLEARIAEIPAGQ---IVIAVDACLGPPASLGYFLTADEPLRPAQSVGLNLPAVGHYSL 144 NL+ ++AEI ++A+DACLG S+G F D PL+P V LP VG + Sbjct: 88 VNLKEKLAEIEQAHKHPFIVAIDACLGRVKSVGSFQIGDGPLKPGAGVQKELPEVGDIHI 147 Query: 145 AAIVDVYGPRPYRTLQSTPLHRVMVMAKQIA 175 IV+V G Y LQ+T LH VM MA ++ Sbjct: 148 NGIVNVSGFMEYFVLQNTRLHLVMSMANTLS 178 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,155,339,716 Number of extensions: 48834521 Number of successful extensions: 106137 Number of sequences better than 1.0e-05: 219 Number of HSP's gapped: 105821 Number of HSP's successfully gapped: 219 Length of query: 192 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 64 Effective length of database: 1,854,806,283 Effective search space: 118707602112 Effective search space used: 118707602112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)