BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0167.0025.p (278 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5L9.1 B3K5L9_9BACI Polysaccharide deacetylase 308 5e-82 A9BJ31.1 A9BJ31_PETMO Polysaccharide deacetylase 292 3e-77 A4XG18.1 A4XG18_CALS8 Polysaccharide deacetylase 286 1e-75 B9MPZ3.1 B9MPZ3_ANATD Polysaccharide deacetylase 285 3e-75 B8I4I0.1 B8I4I0_CLOCE Polysaccharide deacetylase 283 1e-74 >B3K5L9.1 B3K5L9_9BACI Polysaccharide deacetylase Length = 265 Score = 308 bits (788), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 138/265 (52%), Positives = 191/265 (72%) Query: 13 MKIKLDLFPGGVTKALTTSWDDGRIYDRQLVAVLNRHGLKGSFHLNSGFFGKDSYITREE 72 M+I+ D FP G KALT S+DDGR YDR+LV LN +G++G+FHLNSG GK YI E Sbjct: 1 MRIQYDRFPNGAKKALTLSFDDGREYDRKLVKKLNEYGIRGTFHLNSGTLGKGGYIAPSE 60 Query: 73 AASLYKGHEISAHTCTHPFLSMTPREGIAEEVLRDREHLEQIAGYPVRGMSYPFGDYNDG 132 ASLY+GHE+SAHT HPFL P E + E+V+ DR+ LE + YP++GMSYPFG Y++ Sbjct: 61 VASLYRGHEVSAHTVDHPFLEQIPTEQVVEQVVEDRKALEALVHYPIKGMSYPFGTYSEQ 120 Query: 133 VLSILPALGIEYSRTVQSHGSFILPDNPLAWHPTCHHRDMLALGQQFLEEKPKYPRMQLL 192 V+ +L +G+EY+RTV SHGSF PD+ L WHPTCHH++M+ ++F++ + + RM +L Sbjct: 121 VIGLLRYVGMEYARTVNSHGSFHKPDDWLRWHPTCHHKEMVEYAEKFVDMQQIFSRMAIL 180 Query: 193 YVWGHSYEFNDNNNWEELEQFAGMMGGHEDIWYATNIEIVDYLSAVRGLRFSASRSIVYN 252 YVWGHSYEF ++ NW+ +++F M+GG DIWYATN EI Y SA+ LRFSA +++N Sbjct: 181 YVWGHSYEFENDRNWDLVDRFGDMIGGRNDIWYATNAEIYAYCSALDQLRFSADSRMIHN 240 Query: 253 PSAVDVWITAEDQVRQIPSGATLQL 277 PSA++VWI+ + + +I G +L Sbjct: 241 PSALNVWISVDGEPLEIKGGQMARL 265 >A9BJ31.1 A9BJ31_PETMO Polysaccharide deacetylase Length = 265 Score = 292 bits (747), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 133/265 (50%), Positives = 183/265 (69%) Query: 13 MKIKLDLFPGGVTKALTTSWDDGRIYDRQLVAVLNRHGLKGSFHLNSGFFGKDSYITREE 72 MKI +P G KALT S+DDG+IYDR+L+ + N++G+KG+FHLNSG + ++ E Sbjct: 1 MKISFGFYPQGKIKALTMSYDDGQIYDRRLIRIFNKYGIKGTFHLNSGKLDSEPFLNSSE 60 Query: 73 AASLYKGHEISAHTCTHPFLSMTPREGIAEEVLRDREHLEQIAGYPVRGMSYPFGDYNDG 132 L++GHE++ HT HP+L+ P+E I EE++ DRE LE + YP+RGMSYP+GDY++ Sbjct: 61 IRDLFEGHEVAIHTLNHPYLTRVPKESIIEEIMEDRERLESLVNYPIRGMSYPYGDYDEE 120 Query: 133 VLSILPALGIEYSRTVQSHGSFILPDNPLAWHPTCHHRDMLALGQQFLEEKPKYPRMQLL 192 +L +LP LGIEYSRTV SHG+F LP + L W+PTCHH D L + ++ M LL Sbjct: 121 LLELLPYLGIEYSRTVSSHGNFSLPTHFLRWNPTCHHDDNLLKKYEEFKKLESNETMPLL 180 Query: 193 YVWGHSYEFNDNNNWEELEQFAGMMGGHEDIWYATNIEIVDYLSAVRGLRFSASRSIVYN 252 YVWGHS+EF NNNW+ +E+F + E IWYATN+EIVDYL A+R L+FS ++ IVYN Sbjct: 181 YVWGHSFEFERNNNWDMIEEFCKKISNDETIWYATNVEIVDYLKALRNLKFSVNKKIVYN 240 Query: 253 PSAVDVWITAEDQVRQIPSGATLQL 277 PS++ VWI + ++ G L L Sbjct: 241 PSSLTVWIGVDGNPVKVEGGRYLTL 265 >A4XG18.1 A4XG18_CALS8 Polysaccharide deacetylase Length = 265 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 134/260 (51%), Positives = 186/260 (71%), Gaps = 2/260 (0%) Query: 19 LFPGGVTKALTTSWDDGRIYDRQLVAVLNRHGLKGSFHLNSGFFGKDSYITREEAASLYK 78 LFPGG +KALT S+DDG++YDR+LV++ N +G+KG+F LNS GKD ++ +E LY+ Sbjct: 6 LFPGGRSKALTMSYDDGQVYDRKLVSIFNEYGIKGTFFLNSANLGKDIFVLPDEVPQLYR 65 Query: 79 GHEISAHTCTHPFLSMTPREGIAEEVLRDREHLEQIAGYPVRGMSYPFGDYNDGVLSILP 138 GHE+ H THPFL P E I EE++ DR++LE + GYPV+GMSYP+G YN+ V+ ILP Sbjct: 66 GHEVGIHAKTHPFLDSIPLESIIEEIIEDRKYLETLVGYPVKGMSYPYGVYNEEVVKILP 125 Query: 139 ALGIEYSRTVQSHGSFILPDNPLAWHPTCHHR-DMLALGQQFLEEKPKYPRMQLLYVWGH 197 +LGIEYSRTV S SF +P N L W+PTCHH+ D+L + ++FLE + K +QL+YVWGH Sbjct: 126 SLGIEYSRTVNSTYSFHIPTNFLVWNPTCHHKQDLLEITKRFLETENK-NHLQLMYVWGH 184 Query: 198 SYEFNDNNNWEELEQFAGMMGGHEDIWYATNIEIVDYLSAVRGLRFSASRSIVYNPSAVD 257 S+EF NNW+ +E F M+ +W+ATNIEIV Y+ A+R L FS R IVYNPSA+ Sbjct: 185 SFEFERENNWKLMEDFCKMVSKTTSVWFATNIEIVRYIKALRMLEFSVKRDIVYNPSAIS 244 Query: 258 VWITAEDQVRQIPSGATLQL 277 VW++ + ++ G +++ Sbjct: 245 VWLSVNGRAVEVKGGEIVEI 264 >B9MPZ3.1 B9MPZ3_ANATD Polysaccharide deacetylase Length = 265 Score = 285 bits (729), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 134/260 (51%), Positives = 187/260 (71%), Gaps = 2/260 (0%) Query: 19 LFPGGVTKALTTSWDDGRIYDRQLVAVLNRHGLKGSFHLNSGFFGKDSYITREEAASLYK 78 LFP G +KALT S+DDG++YDR+LV++ N +G+KG+F LNS GKD +I +E +LYK Sbjct: 6 LFPNGRSKALTVSYDDGQVYDRKLVSIFNEYGIKGTFFLNSETLGKDIFIQPDEVVTLYK 65 Query: 79 GHEISAHTCTHPFLSMTPREGIAEEVLRDREHLEQIAGYPVRGMSYPFGDYNDGVLSILP 138 GHE+ H THPFL P EGI EE++ DR+ LE + GYPV+GMSYP+G YN+ V+ ILP Sbjct: 66 GHEVGIHAKTHPFLDSIPLEGIIEEIIEDRKFLEGMVGYPVKGMSYPYGVYNEDVIKILP 125 Query: 139 ALGIEYSRTVQSHGSFILPDNPLAWHPTCHHR-DMLALGQQFLEEKPKYPRMQLLYVWGH 197 +LGIEYSRTV S +F +P+N + W+PTCHH+ ++L + ++FLE + K ++QLLYVWGH Sbjct: 126 SLGIEYSRTVNSTYNFNMPENFIVWNPTCHHKQNLLEITKRFLEIENK-NQLQLLYVWGH 184 Query: 198 SYEFNDNNNWEELEQFAGMMGGHEDIWYATNIEIVDYLSAVRGLRFSASRSIVYNPSAVD 257 S+EF NNW+ +E+F M+ +W+ATNIEIV Y+ A++ L FS R +VYNPSA+ Sbjct: 185 SFEFERENNWDLIEEFCKMISKASSVWFATNIEIVRYVKALKMLEFSVERDVVYNPSAIS 244 Query: 258 VWITAEDQVRQIPSGATLQL 277 VW+ V ++ G + L Sbjct: 245 VWLLVNGNVVEVSGGQIVTL 264 >B8I4I0.1 B8I4I0_CLOCE Polysaccharide deacetylase Length = 266 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 135/261 (51%), Positives = 177/261 (67%), Gaps = 5/261 (1%) Query: 20 FPGGVTKALTTSWDDGRIYDRQLVAVLNRHGLKGSFHLNSGFFGKDSYITREEAASLYKG 79 +P G KALT S+DDG+I+DR+LV + N++ +K +FHLNSG G D +IT+EE SLYKG Sbjct: 7 YPQGKKKALTFSYDDGQIHDRRLVEIFNKYNMKATFHLNSGTLGTDGFITKEEIESLYKG 66 Query: 80 HEISAHTCTHPFLSMTPREGIAEEVLRDREHLEQIAGYPVRGMSYPFGDYNDGVLSILPA 139 HEIS H+ THP+L+ +E I EE+ DR LE I GYP+RGMSYPFG+Y+ V+ L Sbjct: 67 HEISCHSVTHPYLTKLSKEQIVEEIREDRRELENIVGYPLRGMSYPFGEYDADVVKALDV 126 Query: 140 LGIEYSRTVQSHGSFILPDNPLAWHPTCHHRDMLALGQQFLEEKPKYP--RMQLLYVWGH 197 LGIEYSRTV S G F +P N L WHPTCHH + + L+ K P ++ L Y+WGH Sbjct: 127 LGIEYSRTVNSTGGFSMPGNFLEWHPTCHHNS--GIKAKLLDFKNPSPWLKLPLFYIWGH 184 Query: 198 SYEFNDNNNWEELEQFAGMMGGHEDIWYATNIEIVDYLSAVRGLRFSASRSIVYNPSAVD 257 S+EF NNWE +E F IWYATNIEI DY+ A++GL FS ++IVYNPSAV Sbjct: 185 SFEFYRENNWEVIEDFCKEAADDPAIWYATNIEIKDYICALKGLIFSVDQTIVYNPSAVS 244 Query: 258 VWITAEDQ-VRQIPSGATLQL 277 VW++ +D+ ++ +G TL Sbjct: 245 VWLSRDDRSAVELKAGQTLTF 265 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,812,691,608 Number of extensions: 76786427 Number of successful extensions: 165115 Number of sequences better than 1.0e-05: 54 Number of HSP's gapped: 165249 Number of HSP's successfully gapped: 54 Length of query: 278 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 144 Effective length of database: 1,798,280,193 Effective search space: 258952347792 Effective search space used: 258952347792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)