BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0167.0020.p
         (179 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K5I6.1 B3K5I6_9BACI Glycoside hydrolase family 2 sugar binding      213   4e-54
B1DB39.1 B1DB39_9BACL Glycoside hydrolase family 2 TIM barrel         210   3e-53

>B3K5I6.1 B3K5I6_9BACI Glycoside hydrolase family 2 sugar binding
          Length = 1405

 Score =  213 bits (543), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 104/180 (57%), Positives = 130/180 (72%), Gaps = 6/180 (3%)

Query: 1    MGAAFADELLIRDKGDAEWAVETAMVLPCPPYVDYQAMKDYYTDPEFSLNNLGEGLYGWM 60
            +GAAF D LL+ +K D  WAVE  M L CPPYVD++AMK YYTDPE+SLNNLGE LYGWM
Sbjct: 1231 LGAAFDDRLLVSEKADGAWAVEAVMALSCPPYVDFEAMKTYYTDPEYSLNNLGESLYGWM 1290

Query: 61   KKKERRA-DGTLLIPDPAGCPVFLSCFVHLPALSEDSRTGNVRTGRLQVQSDNAFEIYMN 119
            +KKERR+ DG + I   A  P FLSCFV +P  +E  R G +R     +QSD  + I++N
Sbjct: 1291 QKKERRSEDGKMRISHVANEPWFLSCFVQVPDGTEPYRKGYMR-----IQSDVPYAIFLN 1345

Query: 120  GEQVAAPEKEIRLSSGINRLIAIVQGGREDFAFGMVFLNSDGTYMNDLEYRLTMDEVEPK 179
            GE +  PE E+ L SG+NRL+AIV G   +  FGMV L++DG+YM DLEYR+T+DEVEPK
Sbjct: 1346 GEFIPEPELELALKSGLNRLVAIVHGNGGNMDFGMVILHADGSYMKDLEYRMTLDEVEPK 1405


>B1DB39.1 B1DB39_9BACL Glycoside hydrolase family 2 TIM barrel
          Length = 1324

 Score =  210 bits (535), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/182 (58%), Positives = 131/182 (71%), Gaps = 10/182 (5%)

Query: 1    MGAAFADELLIRDKGDAEWAVETAMVLPCPPYVDYQAMKDYYTDPEFSLNNLGEGLYGWM 60
            +GA+F D LL   KG ++WAVE  M +PC PYVD+ AMK YY DPEFSLNNLGEGLYGWM
Sbjct: 1150 LGASFDDGLLSAVKGSSQWAVEKIMAMPCRPYVDFDAMKAYYIDPEFSLNNLGEGLYGWM 1209

Query: 61   KKKER-RADGTLLIPDPAGCPVFLSCFVHL--PALSEDSRTGNVRTGRLQVQSDNAFEIY 117
            +KKER R DGT  + +P G   F SCFV++  P L E       + G+L + ++++ EIY
Sbjct: 1210 QKKERSRYDGTFRVLNPNGDRWFFSCFVYMLDPTLDE-------KNGQLLITTNSSCEIY 1262

Query: 118  MNGEQVAAPEKEIRLSSGINRLIAIVQGGREDFAFGMVFLNSDGTYMNDLEYRLTMDEVE 177
            MNG QVAAPEKEI L +GINRLIAIV G  E+   GMVF N+DGT M  L+Y+LT+DEVE
Sbjct: 1263 MNGSQVAAPEKEISLHAGINRLIAIVGGTEEEIRIGMVFKNTDGTPMKHLQYKLTLDEVE 1322

Query: 178  PK 179
            PK
Sbjct: 1323 PK 1324


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,173,603,187
Number of extensions: 48686523
Number of successful extensions: 100035
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 100031
Number of HSP's successfully gapped: 2
Length of query: 179
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 52
Effective length of database: 1,864,227,298
Effective search space: 96939819496
Effective search space used: 96939819496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)