BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0167.0017.p (313 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDM6.1 B3KDM6_9BACI Thioredoxin reductase EC=1.8.1.9 559 e-157 B3K354.1 B3K354_9BACI Thioredoxin reductase EC=1.8.1.9 507 e-142 B1DKX9.1 B1DKX9_9BACL Thioredoxin reductase EC=1.8.1.9 489 e-136 B1D8P9.1 B1D8P9_9BACL Thioredoxin reductase EC=1.8.1.9 487 e-136 Q2BA26.1 Q2BA26_9BACI Thioredoxin reductase EC=1.8.1.9 466 e-129 >B3KDM6.1 B3KDM6_9BACI Thioredoxin reductase EC=1.8.1.9 Length = 313 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 269/313 (85%), Positives = 286/313 (91%) Query: 1 MYKSIIIGTGPAGLTAAIYLARANLNPLVIEGPQPGGQLXXXXEVENFPGFPDGIMGPEL 60 MYKS+IIGTGPAGLTAAIYLARANL+PLVIEGPQPGGQL EVENFPGFP+GIMGPEL Sbjct: 1 MYKSVIIGTGPAGLTAAIYLARANLSPLVIEGPQPGGQLTTTTEVENFPGFPEGIMGPEL 60 Query: 61 MDNMRKQAERFGAKFVTGWVNSVELGERPFKLNVEGMGALTTDTLILSTGATAKYLGIPG 120 MDNMR+QAERFGA+F TGWVNSVE GERPFKL+V+GMG + +TLI+STGATAKYLGIPG Sbjct: 61 MDNMRQQAERFGAEFRTGWVNSVEFGERPFKLDVDGMGEVVAETLIISTGATAKYLGIPG 120 Query: 121 EQDNIGRGVSTCATCDGFFFRGKEIVVVGGGDSALEEAGFLTRFASKVTLVHRREELRAS 180 EQDN+GRGVSTCATCDGFFFRGKEIVVVGGGDSALEEA FLTRFASKVTLVHRREELRAS Sbjct: 121 EQDNVGRGVSTCATCDGFFFRGKEIVVVGGGDSALEEANFLTRFASKVTLVHRREELRAS 180 Query: 181 KIMQDRVRDNEKVAWSLNRTPLEVTSGDRGVNGIKVLNNVTGEEEFIEASGVFVAIGHHP 240 KIMQDR R NEK+ W+LNRTP EV + + GV GIKVLNN TGEEE I SGVFVAIGHHP Sbjct: 181 KIMQDRARANEKIEWALNRTPQEVIADETGVKGIKVLNNETGEEETIAVSGVFVAIGHHP 240 Query: 241 NTAFLGGQITTDANGYIVTNPGTSETNIPGVFACGDVQDTRYKQAITAAGSGCMAAMDAE 300 NT FLGG ITTD NGYIVT PGTSETNI GVFACGDVQDTRY+QAITAAGSGCMAAMDAE Sbjct: 241 NTGFLGGSITTDPNGYIVTTPGTSETNIQGVFACGDVQDTRYRQAITAAGSGCMAAMDAE 300 Query: 301 KYIESLEHSAVIL 313 KYIESLEHSAV+L Sbjct: 301 KYIESLEHSAVVL 313 >B3K354.1 B3K354_9BACI Thioredoxin reductase EC=1.8.1.9 Length = 317 Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust. Identities = 237/304 (77%), Positives = 268/304 (88%) Query: 1 MYKSIIIGTGPAGLTAAIYLARANLNPLVIEGPQPGGQLXXXXEVENFPGFPDGIMGPEL 60 MYKSI+IGTGPAGLTAAIYLARANL PLVIEG QPGGQL EVENFPGFP GIMGPEL Sbjct: 1 MYKSIVIGTGPAGLTAAIYLARANLKPLVIEGMQPGGQLTTTTEVENFPGFPQGIMGPEL 60 Query: 61 MDNMRKQAERFGAKFVTGWVNSVELGERPFKLNVEGMGALTTDTLILSTGATAKYLGIPG 120 MDNMR+QAERFGA+F + WV SV+ ERPFK+NVEGMG L +++I+STGA+AKYLGIPG Sbjct: 61 MDNMRQQAERFGAEFKSAWVESVDFSERPFKVNVEGMGELLAESVIISTGASAKYLGIPG 120 Query: 121 EQDNIGRGVSTCATCDGFFFRGKEIVVVGGGDSALEEAGFLTRFASKVTLVHRREELRAS 180 EQ+N+GRGVSTCATCDGFFFRGK+I+V+GGGDSA+EEA FLTRFAS VT+V+RR ELRAS Sbjct: 121 EQENVGRGVSTCATCDGFFFRGKKIIVIGGGDSAMEEASFLTRFASSVTVVNRRTELRAS 180 Query: 181 KIMQDRVRDNEKVAWSLNRTPLEVTSGDRGVNGIKVLNNVTGEEEFIEASGVFVAIGHHP 240 KIMQDR R+NEK+ W+L+RTP+EV + D GV G+KV NN TGEEE IEA GVFVAIGH P Sbjct: 181 KIMQDRARENEKIQWALDRTPVEVVTSDTGVKGLKVRNNETGEEELIEAEGVFVAIGHTP 240 Query: 241 NTAFLGGQITTDANGYIVTNPGTSETNIPGVFACGDVQDTRYKQAITAAGSGCMAAMDAE 300 NT FLG QITTD GYI+ PGT+ETNIPGVFACGDVQDTRY+QAITAAG+GCMAAMD E Sbjct: 241 NTGFLGNQITTDPTGYILVKPGTTETNIPGVFACGDVQDTRYRQAITAAGTGCMAAMDCE 300 Query: 301 KYIE 304 KY+E Sbjct: 301 KYLE 304 >B1DKX9.1 B1DKX9_9BACL Thioredoxin reductase EC=1.8.1.9 Length = 309 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 227/306 (74%), Positives = 267/306 (87%) Query: 1 MYKSIIIGTGPAGLTAAIYLARANLNPLVIEGPQPGGQLXXXXEVENFPGFPDGIMGPEL 60 MYKSIIIGTGPAGLTAAIYLARAN+ PLVIEGP+PGGQL EVENFPGFP+GIMGP+L Sbjct: 1 MYKSIIIGTGPAGLTAAIYLARANMKPLVIEGPEPGGQLTTTTEVENFPGFPEGIMGPDL 60 Query: 61 MDNMRKQAERFGAKFVTGWVNSVELGERPFKLNVEGMGALTTDTLILSTGATAKYLGIPG 120 M NMRKQAERFGA+F+TGWVN+V++ ERPFKL VEG G +T+I+STGA+A++LGIPG Sbjct: 61 MANMRKQAERFGAEFMTGWVNNVDMSERPFKLQVEGKGEFVGETIIISTGASARWLGIPG 120 Query: 121 EQDNIGRGVSTCATCDGFFFRGKEIVVVGGGDSALEEAGFLTRFASKVTLVHRREELRAS 180 E+DNIGRGVSTCATCDGFFFR K+IVV+GGGDSA+EEA FLTRFA+ V LV+RR+ELRAS Sbjct: 121 EKDNIGRGVSTCATCDGFFFRNKKIVVIGGGDSAMEEANFLTRFATNVELVNRRDELRAS 180 Query: 181 KIMQDRVRDNEKVAWSLNRTPLEVTSGDRGVNGIKVLNNVTGEEEFIEASGVFVAIGHHP 240 KIMQDR R NEK++WSLNRTPLEV + GV G+KV NN TGE+E I+ GVF+AIGH P Sbjct: 181 KIMQDRARGNEKISWSLNRTPLEVEANGMGVTGLKVRNNATGEDETIQTDGVFIAIGHTP 240 Query: 241 NTAFLGGQITTDANGYIVTNPGTSETNIPGVFACGDVQDTRYKQAITAAGSGCMAAMDAE 300 NT FL GQI TD +GYI PG+SETN+PGVFACGDVQD +Y+QAITAAGSGCMAA+D E Sbjct: 241 NTKFLNGQIDTDEHGYIKVKPGSSETNVPGVFACGDVQDNKYRQAITAAGSGCMAALDCE 300 Query: 301 KYIESL 306 +++E++ Sbjct: 301 RFLENV 306 >B1D8P9.1 B1D8P9_9BACL Thioredoxin reductase EC=1.8.1.9 Length = 313 Score = 487 bits (1254), Expect = e-136, Method: Compositional matrix adjust. Identities = 225/311 (72%), Positives = 268/311 (86%) Query: 1 MYKSIIIGTGPAGLTAAIYLARANLNPLVIEGPQPGGQLXXXXEVENFPGFPDGIMGPEL 60 MYK++IIGTGPAGLTAAIYLARAN+ PLVIEG QPGGQL E+ENFPGFP+GI+G EL Sbjct: 1 MYKTVIIGTGPAGLTAAIYLARANMEPLVIEGWQPGGQLTTTTEIENFPGFPEGILGSEL 60 Query: 61 MDNMRKQAERFGAKFVTGWVNSVELGERPFKLNVEGMGALTTDTLILSTGATAKYLGIPG 120 M NMRKQA+RFGA F G V SV+ +RP+ L+VEG+G + +++ILSTGA+AKYLGIPG Sbjct: 61 MSNMRKQAQRFGASFRNGSVKSVDFSKRPYTLDVEGIGEIQAESVILSTGASAKYLGIPG 120 Query: 121 EQDNIGRGVSTCATCDGFFFRGKEIVVVGGGDSALEEAGFLTRFASKVTLVHRREELRAS 180 EQ+NIGRGVSTCATCDGFFFR K++++VGGGDSA+EEA FLTRFAS+VT+V+RREELRAS Sbjct: 121 EQENIGRGVSTCATCDGFFFRNKKLIIVGGGDSAMEEAVFLTRFASEVTVVNRREELRAS 180 Query: 181 KIMQDRVRDNEKVAWSLNRTPLEVTSGDRGVNGIKVLNNVTGEEEFIEASGVFVAIGHHP 240 KIMQDR R NEK++W+LN+TPLEV G+ G+ G+KV NN TGEEEF+EA GVF+ IGH P Sbjct: 181 KIMQDRARANEKISWNLNKTPLEVVPGEMGLKGLKVRNNATGEEEFVEADGVFITIGHTP 240 Query: 241 NTAFLGGQITTDANGYIVTNPGTSETNIPGVFACGDVQDTRYKQAITAAGSGCMAAMDAE 300 NT FL GQI TD GYI+ PGTSETNIPGVFACGDVQD +Y+QAITAAGSGCMAA+DAE Sbjct: 241 NTKFLSGQIDTDEQGYIIVKPGTSETNIPGVFACGDVQDRQYRQAITAAGSGCMAALDAE 300 Query: 301 KYIESLEHSAV 311 +++E+ H AV Sbjct: 301 RFLEAQSHDAV 311 >Q2BA26.1 Q2BA26_9BACI Thioredoxin reductase EC=1.8.1.9 Length = 319 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 212/304 (69%), Positives = 255/304 (83%) Query: 1 MYKSIIIGTGPAGLTAAIYLARANLNPLVIEGPQPGGQLXXXXEVENFPGFPDGIMGPEL 60 M K +I+GTGPAGLTAAIYLARAN+NP++IEG QPGGQL EVENFPGF DGIMGPEL Sbjct: 1 MEKVVILGTGPAGLTAAIYLARANMNPVIIEGDQPGGQLTLTTEVENFPGFTDGIMGPEL 60 Query: 61 MDNMRKQAERFGAKFVTGWVNSVELGERPFKLNVEGMGALTTDTLILSTGATAKYLGIPG 120 MDNMRKQAERFGA F GWV + ++PF++ +G+G + +++ILSTGA+AK L IPG Sbjct: 61 MDNMRKQAERFGAVFKRGWVTEADFSKKPFRMKADGIGEIEAESVILSTGASAKLLNIPG 120 Query: 121 EQDNIGRGVSTCATCDGFFFRGKEIVVVGGGDSALEEAGFLTRFASKVTLVHRREELRAS 180 E+DNIG+GVSTCATCDGFFFRGK+++++GGGDSA+EEA FLT+FA VT+VHRR+ELRAS Sbjct: 121 EKDNIGKGVSTCATCDGFFFRGKKVLIIGGGDSAMEEANFLTKFADNVTIVHRRDELRAS 180 Query: 181 KIMQDRVRDNEKVAWSLNRTPLEVTSGDRGVNGIKVLNNVTGEEEFIEASGVFVAIGHHP 240 KIMQDR R+N+K++W LNRTP+EV S V G+KVLNN TGEEE +E G+FVAIGH P Sbjct: 181 KIMQDRARENQKISWKLNRTPVEVLSESDKVTGLKVLNNETGEEEVLETDGIFVAIGHRP 240 Query: 241 NTAFLGGQITTDANGYIVTNPGTSETNIPGVFACGDVQDTRYKQAITAAGSGCMAAMDAE 300 NT FLG QI D +GYI PGT+ETNI GVFACGDVQD RY+QAITAAG+GCMAA+DAE Sbjct: 241 NTGFLGSQIDLDESGYITVKPGTTETNIKGVFACGDVQDKRYRQAITAAGTGCMAALDAE 300 Query: 301 KYIE 304 +Y+E Sbjct: 301 RYLE 304 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,887,248,267 Number of extensions: 79509083 Number of successful extensions: 263313 Number of sequences better than 1.0e-05: 4353 Number of HSP's gapped: 255842 Number of HSP's successfully gapped: 4358 Length of query: 313 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 178 Effective length of database: 1,788,859,178 Effective search space: 318416933684 Effective search space used: 318416933684 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)