BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0167.0010.p (498 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDM1.1 B3KDM1_9BACI Xylulokinase 791 0.0 B1D672.1 B1D672_9BACL Xylulokinase 692 0.0 P39211.2 XYLB_BACSU Xylulose kinase EC=2.7.1.17 676 0.0 A7Z523.1 A7Z523_BACA2 XylB EC=2.7.1.17 674 0.0 Q9K994.1 Q9K994_BACHD Xylose kinase 644 0.0 >B3KDM1.1 B3KDM1_9BACI Xylulokinase Length = 498 Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/497 (76%), Positives = 425/497 (85%) Query: 1 MKYVIGVDLGTSAVKTVLVDPQGKVAFEHSESYPLSRPQPNWSEQNPEDWVQGTLVSLRR 60 M YVIGVDLGTSAVKTVLVD G V EHSESYPLS+P+P +SEQ PEDWV T++SLR+ Sbjct: 1 MSYVIGVDLGTSAVKTVLVDRSGTVVAEHSESYPLSQPKPGYSEQRPEDWVDKTVLSLRQ 60 Query: 61 LIEVSGVDPSQVDGISFSGQMHGLVLVDREGKVLRPAILWNDTRTTAQCRKIEQTLGSKL 120 L++ + ++PS+V+G+SFSGQMHGLVLVD EG VLRPAILWNDTRTTAQCR+IE+TL KL Sbjct: 61 LMKGNNINPSEVEGLSFSGQMHGLVLVDGEGAVLRPAILWNDTRTTAQCRRIEETLQEKL 120 Query: 121 IGIARNRALEGFTLPKILWVQENEPEVLAQAALFLLPKDYVRYRLTGDYAMDYSDAAGTL 180 +GIARNRALEGFTLPKILWVQE EPE+L +AALFLLPKDYVR+RLTG YAMDYSDAAGTL Sbjct: 121 LGIARNRALEGFTLPKILWVQEFEPELLERAALFLLPKDYVRFRLTGQYAMDYSDAAGTL 180 Query: 181 LLDVGAKTWSAEIAEAFGLPFSLCPKLVESFDLTGTLLPEIAEASGLLPSTKVFAGGADN 240 LLDV K+WS +I +AF LP +LCP LVESFD GTLLPEIAE + LLP TKVFAGGADN Sbjct: 181 LLDVAGKSWSTDILDAFQLPHTLCPPLVESFDECGTLLPEIAEQAALLPETKVFAGGADN 240 Query: 241 ACGALGAGILGEGRTMCSIGTSGVVLSYESNKDLNLEGKVHFFNHGEKDAYYIMGVTLAA 300 ACGA+GAGIL EG+TMCSIGTSGVVLSYE +++ EGKVHFFNH EKDAYYIMGVTLAA Sbjct: 241 ACGAIGAGILEEGQTMCSIGTSGVVLSYEERHEVDFEGKVHFFNHSEKDAYYIMGVTLAA 300 Query: 301 GYSLTWFKETFAGDKSFDELLQGVDSIPAGSGGLLFTPYIVGERTPHPDPNIRGSFIGMD 360 GYSLTWFK+TFA D SFD LL + +IP GSGGLLFTPYIVGERTPHPD IRGSFIGMD Sbjct: 301 GYSLTWFKDTFAPDVSFDALLSDIGNIPVGSGGLLFTPYIVGERTPHPDATIRGSFIGMD 360 Query: 361 AGHTLAHFTRSVLEGITFSLRESIDIVRDSGKEITEVVAIGGGAKNEAWLQMQADIFNAS 420 AGH L HF RSVLEGITFSLRESIDI+R SGK+I V++IGGGAKNE WLQMQAD+FNA Sbjct: 361 AGHKLPHFARSVLEGITFSLRESIDILRASGKQIDRVISIGGGAKNETWLQMQADVFNAE 420 Query: 421 IIKLESEQGPAMGAAMLAAYGSGWFASLSECAEAFIRPAEVYKPNAQQAEVYNGLFHLYQ 480 I+KLESEQGPAMGAAMLAAYG GWF SL CA+AF+RPA Y PN Q + Y+ LF LYQ Sbjct: 421 IVKLESEQGPAMGAAMLAAYGCGWFPSLQGCAKAFLRPARSYSPNPQAVQAYDKLFGLYQ 480 Query: 481 QVYGQTRELNDKLAAYR 497 VYG TREL +L+ +R Sbjct: 481 SVYGATRELGAELSEFR 497 >B1D672.1 B1D672_9BACL Xylulokinase Length = 498 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/497 (65%), Positives = 394/497 (79%) Query: 1 MKYVIGVDLGTSAVKTVLVDPQGKVAFEHSESYPLSRPQPNWSEQNPEDWVQGTLVSLRR 60 M YV+G+DLGTSAVK +LVD G VA E S SYPL WSEQ PEDWVQ T+ +L Sbjct: 1 MSYVVGIDLGTSAVKALLVDKNGTVAAEASRSYPLFHEHSGWSEQKPEDWVQATIEALNE 60 Query: 61 LIEVSGVDPSQVDGISFSGQMHGLVLVDREGKVLRPAILWNDTRTTAQCRKIEQTLGSKL 120 + +G+ Q++GISFSGQMHGLVL++ + K +R AILWNDTRTT QCR+IE+TLG KL Sbjct: 61 VASSNGIAAEQIEGISFSGQMHGLVLLNADNKPVRNAILWNDTRTTEQCREIERTLGDKL 120 Query: 121 IGIARNRALEGFTLPKILWVQENEPEVLAQAALFLLPKDYVRYRLTGDYAMDYSDAAGTL 180 +GI RN ALEGFTLPKILWV++ EP+ QA LF+LPKDYVRY LTG+ MDYSDAAGTL Sbjct: 121 LGITRNPALEGFTLPKILWVRQYEPQAFEQAKLFVLPKDYVRYALTGELHMDYSDAAGTL 180 Query: 181 LLDVGAKTWSAEIAEAFGLPFSLCPKLVESFDLTGTLLPEIAEASGLLPSTKVFAGGADN 240 LLDV AK WS+++ AFGLP S CP LVES L GTLLPEIAE +GL STKVFAGGADN Sbjct: 181 LLDVAAKEWSSDVLAAFGLPASFCPPLVESHGLVGTLLPEIAERTGLQSSTKVFAGGADN 240 Query: 241 ACGALGAGILGEGRTMCSIGTSGVVLSYESNKDLNLEGKVHFFNHGEKDAYYIMGVTLAA 300 ACGA+GAGIL EG T+ SIGTSGV+L+YE++K+ + GKVHFFNHG+++++Y MGVTLAA Sbjct: 241 ACGAIGAGILSEGLTLSSIGTSGVILAYENDKNKDFGGKVHFFNHGKENSFYAMGVTLAA 300 Query: 301 GYSLTWFKETFAGDKSFDELLQGVDSIPAGSGGLLFTPYIVGERTPHPDPNIRGSFIGMD 360 GYSL+WFK+TFA D+SFDE+LQGV + G+GGL+FTPY+VGERTPH DP IR SFIG+D Sbjct: 301 GYSLSWFKKTFAPDESFDEMLQGVGEVKPGAGGLIFTPYLVGERTPHADPAIRASFIGVD 360 Query: 361 AGHTLAHFTRSVLEGITFSLRESIDIVRDSGKEITEVVAIGGGAKNEAWLQMQADIFNAS 420 H HF R+V+EGITFSL ES+D+ R GK + +VV+IGGGA+N WLQMQADIFNA+ Sbjct: 361 GSHERIHFARAVMEGITFSLNESVDLFRSVGKTVDKVVSIGGGAQNPVWLQMQADIFNAT 420 Query: 421 IIKLESEQGPAMGAAMLAAYGSGWFASLSECAEAFIRPAEVYKPNAQQAEVYNGLFHLYQ 480 ++ LE+EQGP +GAAMLAAYG GWF SL CAE F++ A Y+P + E Y GLF +YQ Sbjct: 421 VVALENEQGPGLGAAMLAAYGCGWFDSLEACAEQFVKHAASYEPQPEAVETYKGLFRIYQ 480 Query: 481 QVYGQTRELNDKLAAYR 497 QVY QTR +N++L AYR Sbjct: 481 QVYAQTRGMNEELVAYR 497 >P39211.2 XYLB_BACSU Xylulose kinase EC=2.7.1.17 Length = 499 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/498 (62%), Positives = 389/498 (78%) Query: 1 MKYVIGVDLGTSAVKTVLVDPQGKVAFEHSESYPLSRPQPNWSEQNPEDWVQGTLVSLRR 60 MKYVIG+DLGTSAVKT+LV+ GKV E S+ YPL + + +SEQNPEDWVQ T+ +L Sbjct: 1 MKYVIGIDLGTSAVKTILVNQNGKVCAETSKRYPLIQEKAGYSEQNPEDWVQQTIEALAE 60 Query: 61 LIEVSGVDPSQVDGISFSGQMHGLVLVDREGKVLRPAILWNDTRTTAQCRKIEQTLGSKL 120 L+ +S V +DGIS+SGQMHGLVL+D++ +VLR AILWNDTRTT QC ++ + G L Sbjct: 61 LVSISNVQAKDIDGISYSGQMHGLVLLDQDRQVLRNAILWNDTRTTPQCIRMTEKFGDHL 120 Query: 121 IGIARNRALEGFTLPKILWVQENEPEVLAQAALFLLPKDYVRYRLTGDYAMDYSDAAGTL 180 + I +NR LEGFTLPK+LWV+E+EPE+ + A+FLLPKDYVR+R+TG +YSDAAGTL Sbjct: 121 LDITKNRVLEGFTLPKMLWVKEHEPELFKKTAVFLLPKDYVRFRMTGVIHTEYSDAAGTL 180 Query: 181 LLDVGAKTWSAEIAEAFGLPFSLCPKLVESFDLTGTLLPEIAEASGLLPSTKVFAGGADN 240 LL + K WS +I G+ +CP LVES D G+LLP +A +GLL TKV+AGGADN Sbjct: 181 LLHITRKEWSNDICNQIGISADICPPLVESHDCVGSLLPHVAAKTGLLEKTKVYAGGADN 240 Query: 241 ACGALGAGILGEGRTMCSIGTSGVVLSYESNKDLNLEGKVHFFNHGEKDAYYIMGVTLAA 300 ACGA+GAGIL G+T+CSIGTSGV+LSYE K+ + +GKVHFFNHG+KD++Y MGVTLAA Sbjct: 241 ACGAIGAGILSSGKTLCSIGTSGVILSYEEEKERDFKGKVHFFNHGKKDSFYTMGVTLAA 300 Query: 301 GYSLTWFKETFAGDKSFDELLQGVDSIPAGSGGLLFTPYIVGERTPHPDPNIRGSFIGMD 360 GYSL WFK TFA ++SF++LLQGV++IP G+ GLL+TPY+VGERTPH D +IRGS IGMD Sbjct: 301 GYSLDWFKRTFAPNESFEQLLQGVEAIPIGANGLLYTPYLVGERTPHADSSIRGSLIGMD 360 Query: 361 AGHTLAHFTRSVLEGITFSLRESIDIVRDSGKEITEVVAIGGGAKNEAWLQMQADIFNAS 420 H HF R+++EGITFSL ESI++ R++GK + VV+IGGGAKN+ WLQMQADIFN Sbjct: 361 GAHNRKHFLRAIMEGITFSLHESIELFREAGKSVHTVVSIGGGAKNDTWLQMQADIFNTR 420 Query: 421 IIKLESEQGPAMGAAMLAAYGSGWFASLSECAEAFIRPAEVYKPNAQQAEVYNGLFHLYQ 480 +IKLE+EQGPAMGAAMLAA+GSGWF SL ECAE FIR A + P AQ + Y LF LY+ Sbjct: 421 VIKLENEQGPAMGAAMLAAFGSGWFESLEECAEQFIREAAAFYPKAQNVQKYKTLFDLYK 480 Query: 481 QVYGQTRELNDKLAAYRK 498 +Y T++LN L ++RK Sbjct: 481 NIYTHTKDLNTALKSFRK 498 >A7Z523.1 A7Z523_BACA2 XylB EC=2.7.1.17 Length = 499 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/498 (62%), Positives = 391/498 (78%) Query: 1 MKYVIGVDLGTSAVKTVLVDPQGKVAFEHSESYPLSRPQPNWSEQNPEDWVQGTLVSLRR 60 MKYVIG+DLGTSAVKT+LV+ GKV E +SYPL + + +SEQNPEDWVQ T+ +L Sbjct: 1 MKYVIGIDLGTSAVKTILVNQNGKVCAETFKSYPLIQEKAGYSEQNPEDWVQQTIAALAE 60 Query: 61 LIEVSGVDPSQVDGISFSGQMHGLVLVDREGKVLRPAILWNDTRTTAQCRKIEQTLGSKL 120 LI +S V P +DGIS+SGQMHGLVL+D++ +VLR AILWNDTRTT QC +I +T G +L Sbjct: 61 LISISNVQPGDIDGISYSGQMHGLVLLDQDLQVLRHAILWNDTRTTPQCSRITETFGDRL 120 Query: 121 IGIARNRALEGFTLPKILWVQENEPEVLAQAALFLLPKDYVRYRLTGDYAMDYSDAAGTL 180 + I +NR LEGFTLPK+LWV+E+EPE+ + A+FLLPKDYVR+R+TG +YSDAAGTL Sbjct: 121 LDITKNRVLEGFTLPKMLWVKEHEPELFHKTAVFLLPKDYVRFRMTGAIHTEYSDAAGTL 180 Query: 181 LLDVGAKTWSAEIAEAFGLPFSLCPKLVESFDLTGTLLPEIAEASGLLPSTKVFAGGADN 240 LL + K WS EI FG+ +CP LVES D G+LLP +A +GLL TKV+AGGADN Sbjct: 181 LLHMTRKEWSDEICNQFGMSAEVCPPLVESHDCVGSLLPSVAAETGLLEKTKVYAGGADN 240 Query: 241 ACGALGAGILGEGRTMCSIGTSGVVLSYESNKDLNLEGKVHFFNHGEKDAYYIMGVTLAA 300 ACGA+GAGIL G+T+CSIGTSGV+LS E +K+ + +GKVHFFNHG+KD++Y MGVTLAA Sbjct: 241 ACGAVGAGILSSGKTLCSIGTSGVILSCEEDKERDFKGKVHFFNHGKKDSFYTMGVTLAA 300 Query: 301 GYSLTWFKETFAGDKSFDELLQGVDSIPAGSGGLLFTPYIVGERTPHPDPNIRGSFIGMD 360 GYSL WFK TFA ++SF++LL+GV+S+P G+ GLL+TPY+VGERTPH D +IRGS IGMD Sbjct: 301 GYSLDWFKRTFAPNESFEQLLRGVESVPIGANGLLYTPYLVGERTPHADSSIRGSLIGMD 360 Query: 361 AGHTLAHFTRSVLEGITFSLRESIDIVRDSGKEITEVVAIGGGAKNEAWLQMQADIFNAS 420 H HF R+++EGITFSL ESI++ R++GK + VV+IGGGAKNE WLQMQADIFN Sbjct: 361 GAHKREHFLRAIMEGITFSLYESIELFREAGKSVDTVVSIGGGAKNETWLQMQADIFNTR 420 Query: 421 IIKLESEQGPAMGAAMLAAYGSGWFASLSECAEAFIRPAEVYKPNAQQAEVYNGLFHLYQ 480 ++KLE+EQGPAMGAAMLAA+GSGWF SL ECAE FI A + P Q + Y LF LY+ Sbjct: 421 VVKLENEQGPAMGAAMLAAFGSGWFDSLEECAEQFIHEAAAFYPKEQNVQKYKTLFELYK 480 Query: 481 QVYGQTRELNDKLAAYRK 498 +Y T++LN L ++R+ Sbjct: 481 NIYVHTKDLNTALKSFRQ 498 >Q9K994.1 Q9K994_BACHD Xylose kinase Length = 498 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/499 (61%), Positives = 390/499 (78%), Gaps = 2/499 (0%) Query: 1 MKYVIGVDLGTSAVKTVLVDPQGKVAFEHSESYPLSRPQPNWSEQNPEDWVQGTLVSLRR 60 M+YV+GVDLGTSAVK +LV+ +G+V + ++SYPL + +P +SEQ+PEDW+ T+ ++ Sbjct: 1 MRYVLGVDLGTSAVKVLLVNERGEVCKQVTKSYPLYQDKPGYSEQDPEDWLNQTIEAISE 60 Query: 61 LIEVSGVDPSQVDGISFSGQMHGLVLVDREGKVLRPAILWNDTRTTAQCRKIEQTLGSK- 119 + + DP +DGISFSGQMHGLVL+D+E +VLRPAILWNDTRTT +CR+IEQTLG + Sbjct: 61 VTSEAS-DPEAIDGISFSGQMHGLVLLDQEQRVLRPAILWNDTRTTNECREIEQTLGKET 119 Query: 120 LIGIARNRALEGFTLPKILWVQENEPEVLAQAALFLLPKDYVRYRLTGDYAMDYSDAAGT 179 L+ IA+N ALEGFTLPK+LWV++ EP+V A+A +F+LPKDYVR+RLTG +YSDAAGT Sbjct: 120 LLAIAKNPALEGFTLPKLLWVKKYEPDVFARANVFMLPKDYVRFRLTGKIHSEYSDAAGT 179 Query: 180 LLLDVGAKTWSAEIAEAFGLPFSLCPKLVESFDLTGTLLPEIAEASGLLPSTKVFAGGAD 239 LL DV K WS +I F LP SLCP +V S G LLPEIA +GL +VFAGGAD Sbjct: 180 LLFDVAKKEWSKDICSCFELPISLCPPVVPSSGEVGELLPEIAAKTGLKKDVRVFAGGAD 239 Query: 240 NACGALGAGILGEGRTMCSIGTSGVVLSYESNKDLNLEGKVHFFNHGEKDAYYIMGVTLA 299 NACGA+GAGIL +G T+CSIGTSGVVLSYE D + GKVH+FNHGE AYY MGVTLA Sbjct: 240 NACGAIGAGILKDGATLCSIGTSGVVLSYEQAADQDFAGKVHYFNHGEATAYYTMGVTLA 299 Query: 300 AGYSLTWFKETFAGDKSFDELLQGVDSIPAGSGGLLFTPYIVGERTPHPDPNIRGSFIGM 359 AGYSL+WFKETFA ++ F+ +++ ++ P G+ GLLFTPYIVGERTPH D IRGSFIG+ Sbjct: 300 AGYSLSWFKETFAPEEPFENIVKEIEKSPPGANGLLFTPYIVGERTPHADATIRGSFIGV 359 Query: 360 DAGHTLAHFTRSVLEGITFSLRESIDIVRDSGKEITEVVAIGGGAKNEAWLQMQADIFNA 419 AGH FTR+V+EGITFSL ESI+I R +GK+I+ VV+IGGGAK+ AWLQ+QADIF A Sbjct: 360 HAGHKRHDFTRAVIEGITFSLNESIEIFRKNGKDISTVVSIGGGAKSPAWLQLQADIFQA 419 Query: 420 SIIKLESEQGPAMGAAMLAAYGSGWFASLSECAEAFIRPAEVYKPNAQQAEVYNGLFHLY 479 +IK SEQGP +GAAMLAAYG GW+ SL++CAEA+++ E Y+PNA++ + Y LF LY Sbjct: 420 KVIKQSSEQGPGLGAAMLAAYGLGWYDSLADCAEAWVKEQESYEPNAEKGKAYEELFTLY 479 Query: 480 QQVYGQTRELNDKLAAYRK 498 + VY QT ELN L+ +R+ Sbjct: 480 RHVYEQTYELNHGLSKFRE 498 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,116,925,897 Number of extensions: 137671094 Number of successful extensions: 369532 Number of sequences better than 1.0e-05: 4446 Number of HSP's gapped: 356474 Number of HSP's successfully gapped: 4580 Length of query: 498 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 358 Effective length of database: 1,741,754,103 Effective search space: 623547968874 Effective search space used: 623547968874 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)