BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0167.0007.p (326 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D7X2.1 B1D7X2_9BACL Binding-protein-dependent transport system... 474 e-132 B1DGY8.1 B1DGY8_9BACL Binding-protein-dependent transport system... 452 e-125 B3KDQ7.1 B3KDQ7_9BACI Binding-protein-dependent transport system... 437 e-121 Q9KBL5.1 Q9KBL5_BACHD Transmembrane lipoprotein 436 e-120 Q5WIY2.1 Q5WIY2_BACSK Polysaccharide ABC transporter permease 413 e-114 >B1D7X2.1 B1D7X2_9BACL Binding-protein-dependent transport systems inner membrane component Length = 319 Score = 474 bits (1219), Expect = e-132, Method: Compositional matrix adjust. Identities = 224/326 (68%), Positives = 273/326 (83%), Gaps = 7/326 (2%) Query: 1 MKADTATAPIPPDTRKRNKKPASGGRFWRNFKNQKYLWMMSIPFVIWAFVFSYLPLWGWT 60 MKA T +P TRK+ ++ FW+ +YL+MMS+PF+IW FVFSY PLWGWT Sbjct: 1 MKA--VTTSVPQQTRKKRER-----NFWKTAIRNRYLYMMSLPFIIWVFVFSYYPLWGWT 53 Query: 61 MAFQKYKPARGFFEQEWVGFDHFKTLFSDSQFLLALRNTLAMSGMGLVAGFIFPITFAIL 120 MAFQK+KPA+ F+EQ+WVGFD FKTLF D F L +RNTLAMS MG++AGF PI FA+L Sbjct: 54 MAFQKFKPAKSFWEQDWVGFDQFKTLFQDDTFYLVMRNTLAMSFMGIIAGFAVPIIFAVL 113 Query: 121 LNEVRLGIFKRFAQTVSYLPHFVSWVVAAGIVTKMLSSENGLVNDILLGIGFIDSPIQFM 180 LNEVR FKRFAQTVSYLPHFVSWVV AGIV+KMLS+++G VN+IL+ +G ID+PIQF+ Sbjct: 114 LNEVRSMAFKRFAQTVSYLPHFVSWVVVAGIVSKMLSADHGTVNEILMWLGIIDTPIQFL 173 Query: 181 AQGHLFWGIVTLSDVWKETGWNAIIYLAAISGIGPELYEASRVDGASRLRQVWHITLPGI 240 A+ H FWGIVT+SDVWKE GWN IIYLAAI+GI E+YEA+RVDGA+R+RQ+WHITLPGI Sbjct: 174 AKPHYFWGIVTVSDVWKEMGWNTIIYLAAIAGISQEMYEAARVDGANRIRQIWHITLPGI 233 Query: 241 RPTIIVLLIMSIGNLLNIGFEKQFLLQNNLVTDYSQVLDLYSLKYGLGMARYSYGTAINI 300 R TI++LLIMSIG+L+ IGFEKQFLL NNLV DYSQVLDLY+L+YGL M+RYS+GTA+NI Sbjct: 234 RSTIVILLIMSIGHLIQIGFEKQFLLGNNLVRDYSQVLDLYALEYGLQMSRYSFGTAVNI 293 Query: 301 FNSVISVILLFTINGIFKRTTKESLL 326 FNSV+S+ILLF NG+FK+ TKES++ Sbjct: 294 FNSVVSIILLFMANGLFKKITKESIM 319 >B1DGY8.1 B1DGY8_9BACL Binding-protein-dependent transport systems inner membrane component Length = 305 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/299 (71%), Positives = 258/299 (86%) Query: 28 WRNFKNQKYLWMMSIPFVIWAFVFSYLPLWGWTMAFQKYKPARGFFEQEWVGFDHFKTLF 87 W+ Q+YL+ MS+PFV++ F+FSYLPLWGWTMAFQ+++ + FF+Q+WVGFD+F+ LF Sbjct: 7 WQRIVRQRYLYYMSVPFVLFVFLFSYLPLWGWTMAFQQFRVGKFFFDQKWVGFDNFRMLF 66 Query: 88 SDSQFLLALRNTLAMSGMGLVAGFIFPITFAILLNEVRLGIFKRFAQTVSYLPHFVSWVV 147 D QF ALRNTLAMS MGL+A F PI FA+LLNEVR+ KRF QTVSYLPHFVSWVV Sbjct: 67 QDDQFFNALRNTLAMSFMGLIASFTIPILFAVLLNEVRISFLKRFVQTVSYLPHFVSWVV 126 Query: 148 AAGIVTKMLSSENGLVNDILLGIGFIDSPIQFMAQGHLFWGIVTLSDVWKETGWNAIIYL 207 AGIVTKMLS+ENG+VN ILLG+ I PIQFMA+ +LFW +VT +D+WKETGWNAIIYL Sbjct: 127 VAGIVTKMLSAENGVVNQILLGLHLIHEPIQFMAKENLFWYLVTSADIWKETGWNAIIYL 186 Query: 208 AAISGIGPELYEASRVDGASRLRQVWHITLPGIRPTIIVLLIMSIGNLLNIGFEKQFLLQ 267 AAI+GIGPELYEA+RVDGASRL+Q+WHITLPGIR TII+LLIMSIG+L++IGFEKQFLL Sbjct: 187 AAIAGIGPELYEAARVDGASRLKQIWHITLPGIRSTIIILLIMSIGHLISIGFEKQFLLG 246 Query: 268 NNLVTDYSQVLDLYSLKYGLGMARYSYGTAINIFNSVISVILLFTINGIFKRTTKESLL 326 N+LV + S+VLDLY+L YGLGM RYS+GTAINIFNSV+S+ILLF NGIFK+ TKES++ Sbjct: 247 NSLVKEKSEVLDLYALNYGLGMGRYSFGTAINIFNSVVSLILLFVANGIFKKITKESIM 305 >B3KDQ7.1 B3KDQ7_9BACI Binding-protein-dependent transport systems inner membrane component Length = 320 Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust. Identities = 211/327 (64%), Positives = 259/327 (79%), Gaps = 8/327 (2%) Query: 1 MKADTAT-APIPPDTRKRNKKPASGGRFWRNFKNQKYLWMMSIPFVIWAFVFSYLPLWGW 59 MKA T T + I P +K+ FW FK QK L+ MS+PF++ F+FSYLP+WGW Sbjct: 1 MKAVTKTESSIQPAAKKKKG-------FWTTFKEQKVLYGMSLPFIVIVFIFSYLPVWGW 53 Query: 60 TMAFQKYKPARGFFEQEWVGFDHFKTLFSDSQFLLALRNTLAMSGMGLVAGFIFPITFAI 119 MAFQ YKP +G FEQ+WVG DHF LF+D +F L LRNTLAMS MGL+ GF PI FA+ Sbjct: 54 LMAFQNYKPGKGIFEQKWVGLDHFAALFADDKFYLVLRNTLAMSFMGLIVGFTIPILFAV 113 Query: 120 LLNEVRLGIFKRFAQTVSYLPHFVSWVVAAGIVTKMLSSENGLVNDILLGIGFIDSPIQF 179 LLNE+R +FKR QT+SYLPHFVSWVV AGIVTKMLS++ G VN +L+ +G ID PIQF Sbjct: 114 LLNELRGSVFKRTVQTISYLPHFVSWVVVAGIVTKMLSTDGGAVNQLLMWLGLIDQPIQF 173 Query: 180 MAQGHLFWGIVTLSDVWKETGWNAIIYLAAISGIGPELYEASRVDGASRLRQVWHITLPG 239 MAQG+LFW IVT SD+WKE GW+AIIYLAAI+GI E +EA++VDGASR+RQ+WHITLP Sbjct: 174 MAQGNLFWYIVTGSDIWKEMGWSAIIYLAAITGIDQEQFEAAKVDGASRIRQIWHITLPS 233 Query: 240 IRPTIIVLLIMSIGNLLNIGFEKQFLLQNNLVTDYSQVLDLYSLKYGLGMARYSYGTAIN 299 I PTI +LLIMSIG+L++IGFEKQFLL N LV DYS+VLDLY+L YGLGM R+S+GTAI Sbjct: 234 IAPTIAILLIMSIGHLISIGFEKQFLLGNPLVVDYSEVLDLYALNYGLGMGRFSFGTAIG 293 Query: 300 IFNSVISVILLFTINGIFKRTTKESLL 326 +FNSV+S+ILL NG+FK+ TK+S++ Sbjct: 294 MFNSVVSIILLLLANGVFKKFTKQSIM 320 >Q9KBL5.1 Q9KBL5_BACHD Transmembrane lipoprotein Length = 319 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 205/297 (69%), Positives = 245/297 (82%) Query: 30 NFKNQKYLWMMSIPFVIWAFVFSYLPLWGWTMAFQKYKPARGFFEQEWVGFDHFKTLFSD 89 K QKYL++MS+PFV W VF+Y PLWGWTMAFQ ++P FFEQEWVG HF LF D Sbjct: 23 TLKQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQD 82 Query: 90 SQFLLALRNTLAMSGMGLVAGFIFPITFAILLNEVRLGIFKRFAQTVSYLPHFVSWVVAA 149 ++F L LRNTLAMS MGL+ GF PI FA+LLNEVR +FKR QTVSYLPHFVSWVV A Sbjct: 83 NRFYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVA 142 Query: 150 GIVTKMLSSENGLVNDILLGIGFIDSPIQFMAQGHLFWGIVTLSDVWKETGWNAIIYLAA 209 GIVTKMLS + G+VN +L+ GF+D P+QFMA+G FW IVTLSD+WKE GWN+II+LAA Sbjct: 143 GIVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAA 202 Query: 210 ISGIGPELYEASRVDGASRLRQVWHITLPGIRPTIIVLLIMSIGNLLNIGFEKQFLLQNN 269 ++GI P+LYEA++VDGASR RQ+WHITLPGIRPTI+V+LI+SIG+L+ IGFEKQFLL N Sbjct: 203 MAGIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLGNP 262 Query: 270 LVTDYSQVLDLYSLKYGLGMARYSYGTAINIFNSVISVILLFTINGIFKRTTKESLL 326 LV DYS+VLDLY+L YGLG+ RYSYGTAI IFNSV+ +ILLF NGIFKR T +S++ Sbjct: 263 LVVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTNQSVM 319 >Q5WIY2.1 Q5WIY2_BACSK Polysaccharide ABC transporter permease Length = 321 Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/302 (64%), Positives = 244/302 (80%), Gaps = 4/302 (1%) Query: 29 RNFKN----QKYLWMMSIPFVIWAFVFSYLPLWGWTMAFQKYKPARGFFEQEWVGFDHFK 84 R+F+ Q+YL+ MS+PFV W FVF YLPL+GWTMAFQ Y+P FFEQEWVGF HF Sbjct: 20 RSFRQTVWQQRYLYAMSLPFVAWVFVFHYLPLFGWTMAFQDYRPGLAFFEQEWVGFKHFI 79 Query: 85 TLFSDSQFLLALRNTLAMSGMGLVAGFIFPITFAILLNEVRLGIFKRFAQTVSYLPHFVS 144 LF D +F L LRNTL MS +GL+ GF FPI FA+LLNE R +FK+ QTVSYLPHFVS Sbjct: 80 ELFQDERFYLVLRNTLVMSLLGLLVGFTFPILFAVLLNEARAKLFKKTVQTVSYLPHFVS 139 Query: 145 WVVAAGIVTKMLSSENGLVNDILLGIGFIDSPIQFMAQGHLFWGIVTLSDVWKETGWNAI 204 WVV AGIVTKMLS + G+VN++L+ G D PIQFM +G FW IVTL+D+WKE GWN+I Sbjct: 140 WVVVAGIVTKMLSVDGGIVNEVLVATGTADKPIQFMTKGEWFWIIVTLADLWKEMGWNSI 199 Query: 205 IYLAAISGIGPELYEASRVDGASRLRQVWHITLPGIRPTIIVLLIMSIGNLLNIGFEKQF 264 I+LAA++G+ P+LYEA++VDGASR RQ+WHITLPGIRPTI+V+LI+SIG+L+ IGFEKQF Sbjct: 200 IFLAAMAGVDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVVLILSIGSLMTIGFEKQF 259 Query: 265 LLQNNLVTDYSQVLDLYSLKYGLGMARYSYGTAINIFNSVISVILLFTINGIFKRTTKES 324 LL N V +YS+VLDLY+L YG+ ++R+SYGTAI IFNS++++ILLF NG+FKR +S Sbjct: 260 LLGNPTVVNYSEVLDLYALNYGINLSRFSYGTAIGIFNSLVAIILLFIANGLFKRYANQS 319 Query: 325 LL 326 ++ Sbjct: 320 VM 321 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.142 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,950,304,750 Number of extensions: 81211722 Number of successful extensions: 271358 Number of sequences better than 1.0e-05: 5119 Number of HSP's gapped: 267429 Number of HSP's successfully gapped: 5119 Length of query: 326 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 190 Effective length of database: 1,779,438,163 Effective search space: 338093250970 Effective search space used: 338093250970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)