BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0167.0006.p (301 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D7X1.1 B1D7X1_9BACL Binding-protein-dependent transport system... 436 e-120 B3KDQ6.1 B3KDQ6_9BACI Binding-protein-dependent transport system... 421 e-116 B1DGY7.1 B1DGY7_9BACL Binding-protein-dependent transport system... 396 e-108 Q9KBL4.1 Q9KBL4_BACHD Transmembrane lipoprotein 385 e-105 Q5WIY1.1 Q5WIY1_BACSK Polysaccharide ABC transporter permease 382 e-104 >B1D7X1.1 B1D7X1_9BACL Binding-protein-dependent transport systems inner membrane component Length = 302 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 218/296 (73%), Positives = 251/296 (84%), Gaps = 2/296 (0%) Query: 6 LTGKSWADRIFDFXXXXXXXXXXXXXXXPFLNVLAISLNDSVDSVRGGITIYPREFTWDN 65 L G +DR+ PFLNVLA+S NDSVDSVRGGITI+PR+FT +N Sbjct: 7 LGGAPLSDRLLSVFVYVFVIFVMIITLYPFLNVLALSFNDSVDSVRGGITIFPRDFTTEN 66 Query: 66 YLKIFTFSGLVTGFKISALRTVAGTLLGLISASMLAFTVSRPDFQGRKFVSTFLAMTMYI 125 Y IF+F GL+TGFKIS LRTVAGT++GLISASMLAFT+SRPDFQGRKFVS FLA+TMY+ Sbjct: 67 YKVIFSFGGLITGFKISVLRTVAGTIVGLISASMLAFTLSRPDFQGRKFVSVFLALTMYV 126 Query: 126 SGGMIPVYMLVKDLGMMNSFAVYIVPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDF 185 SGG+IPVY L++DL MM +F VYI+PGLVSAFNVFVIRSF+DG+PYALQESAKLDGANDF Sbjct: 127 SGGLIPVYFLIRDLHMMGTFWVYILPGLVSAFNVFVIRSFMDGIPYALQESAKLDGANDF 186 Query: 186 TIYLRVILPLLKPALATISLFLAVGQWNAWFDTYLYNGSSPHLTTLQYELMKVLQTTTSG 245 TIY R+ILP+ KPALATI+LFLAVGQWN+WFDTYLYNGS LTTLQ+ELMKVLQ+TTSG Sbjct: 187 TIYWRIILPMAKPALATIALFLAVGQWNSWFDTYLYNGSKESLTTLQFELMKVLQSTTSG 246 Query: 246 NNGD-YRSNIASMASNQVSPESLKMAITIVVTVPILMVYPFIQKYFVKGMTLGAVK 300 NN D + SN+ M S+ VSPES+KMAITIVVTVPIL+VYPF+Q+YFVKGMTLGAVK Sbjct: 247 NNVDIHNSNMTQMMSS-VSPESVKMAITIVVTVPILVVYPFLQRYFVKGMTLGAVK 301 >B3KDQ6.1 B3KDQ6_9BACI Binding-protein-dependent transport systems inner membrane component Length = 302 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 204/292 (69%), Positives = 240/292 (82%) Query: 10 SWADRIFDFXXXXXXXXXXXXXXXPFLNVLAISLNDSVDSVRGGITIYPREFTWDNYLKI 69 S +DR+FD PFLNVLAISLNDSVD+VRGGI I+PREFT DNY++I Sbjct: 11 SLSDRVFDIANFTIMALVMIVTLYPFLNVLAISLNDSVDTVRGGIYIWPREFTLDNYVQI 70 Query: 70 FTFSGLVTGFKISALRTVAGTLLGLISASMLAFTVSRPDFQGRKFVSTFLAMTMYISGGM 129 F + GLVTG K + LRT+AGT LGL+S +ML + +SR DFQGRKF+STFLA+TMY SGGM Sbjct: 71 FKYDGLVTGAKNTILRTLAGTFLGLLSGTMLGYVLSRVDFQGRKFMSTFLALTMYFSGGM 130 Query: 130 IPVYMLVKDLGMMNSFAVYIVPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYL 189 IPV++L++DL MMNSF VYI+PG+VSAFNVFVIRSFID LPY+LQESAKLDGANDFTIY Sbjct: 131 IPVFILIRDLNMMNSFLVYIIPGMVSAFNVFVIRSFIDSLPYSLQESAKLDGANDFTIYY 190 Query: 190 RVILPLLKPALATISLFLAVGQWNAWFDTYLYNGSSPHLTTLQYELMKVLQTTTSGNNGD 249 ++ILPL KP LATI+LFLAVGQWN+W DTYLYNG++PHLTTLQ+ELMKVLQ+T +G Sbjct: 191 KIILPLCKPVLATIALFLAVGQWNSWLDTYLYNGNAPHLTTLQFELMKVLQSTQGQTSGM 250 Query: 250 YRSNIASMASNQVSPESLKMAITIVVTVPILMVYPFIQKYFVKGMTLGAVKS 301 + QVSPES+KMAITIVVTVPIL+VYPF+Q+YFVKGMTLGAVKS Sbjct: 251 MTGQNMAEIVKQVSPESIKMAITIVVTVPILLVYPFLQRYFVKGMTLGAVKS 302 >B1DGY7.1 B1DGY7_9BACL Binding-protein-dependent transport systems inner membrane component Length = 298 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 199/293 (67%), Positives = 244/293 (83%), Gaps = 1/293 (0%) Query: 10 SWADRIFDFXXXXXXXXXXXXXXXPFLNVLAISLNDSVDSVRGGITIYPREFTWDNYLKI 69 S +R+FD PFLNVLAISLNDS D+VRGGIT++PR T+DNY I Sbjct: 6 SLTNRLFDVIVYLVISLVAVCTLYPFLNVLAISLNDSTDTVRGGITVFPRHLTFDNYSLI 65 Query: 70 FTFSGLVTGFKISALRTVAGTLLGLISASMLAFTVSRPDFQGRKFVSTFLAMTMYISGGM 129 F+F+GL+TG KIS LRT+AGT+LGLIS+SMLA+ +SR +F GRKF+S FLA+TMY+SGG+ Sbjct: 66 FSFAGLLTGLKISVLRTLAGTVLGLISSSMLAYVLSRAEFDGRKFLSMFLALTMYVSGGL 125 Query: 130 IPVYMLVKDLGMMNSFAVYIVPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYL 189 IP Y+L++D+ ++ +F VY++PGLVSAFNVF+IRSFIDGLPYALQESAKLDGANDFTIY Sbjct: 126 IPFYLLMRDMHLIGTFWVYVLPGLVSAFNVFIIRSFIDGLPYALQESAKLDGANDFTIYW 185 Query: 190 RVILPLLKPALATISLFLAVGQWNAWFDTYLYNGSSPHLTTLQYELMKVLQTTTSGNNGD 249 RVILPLL PALAT++LFLAVGQWN+WFDTYLYNGS HLTTLQ+ELMKVLQ+T G+NG Sbjct: 186 RVILPLLLPALATVALFLAVGQWNSWFDTYLYNGSKEHLTTLQFELMKVLQSTQVGSNGQ 245 Query: 250 YRSNI-ASMASNQVSPESLKMAITIVVTVPILMVYPFIQKYFVKGMTLGAVKS 301 + + + N++SPES+KMAITI+VTVPIL+VYPF+Q+YFV GMTLGAVKS Sbjct: 246 EVNGMNMNQVMNRISPESVKMAITIIVTVPILLVYPFLQRYFVTGMTLGAVKS 298 >Q9KBL4.1 Q9KBL4_BACHD Transmembrane lipoprotein Length = 297 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/298 (61%), Positives = 237/298 (79%), Gaps = 3/298 (1%) Query: 6 LTGKSWADRIFDFXXXXXXXXXXXXXXXPFLNVLAISLNDSVDSVRGGITIYPREFTWDN 65 +TGK W DR+FD+ PFLNVLAISLNDSVD+VRGGI I+PREFT +N Sbjct: 1 MTGK-WGDRLFDWCNYLFLTMVLLVTLYPFLNVLAISLNDSVDTVRGGIYIWPREFTLEN 59 Query: 66 YLKIFTFSGLVTGFKISALRTVAGTLLGLISASMLAFTVSRPDFQGRKFVSTFLAMTMYI 125 Y IF + LVTGF S LRTV GT+LG+ S++M+AFT+SR DFQ RKFVST + +T+Y Sbjct: 60 YRVIFEYDHLVTGFINSVLRTVIGTVLGVFSSAMVAFTLSRGDFQARKFVSTIIVLTLYF 119 Query: 126 SGGMIPVYMLVKDLGMMNSFAVYIVPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDF 185 SGG+IP YML+++L ++N+F VY++PG+V+AF++ ++RSF+DGLPY+LQESAK+DGANDF Sbjct: 120 SGGLIPGYMLIRELNLINTFWVYVLPGMVNAFHIIIVRSFMDGLPYSLQESAKIDGANDF 179 Query: 186 TIYLRVILPLLKPALATISLFLAVGQWNAWFDTYLYNGSSPHLTTLQYELMKVLQTTT-- 243 TI+ R+ILPL P LATI+LF+AVGQWNAWFDTYLYN S+P+LTTLQYELMK+LQ TT Sbjct: 180 TIFWRIILPLCTPVLATIALFVAVGQWNAWFDTYLYNSSNPNLTTLQYELMKILQNTTMS 239 Query: 244 SGNNGDYRSNIASMASNQVSPESLKMAITIVVTVPILMVYPFIQKYFVKGMTLGAVKS 301 + + +R S VSPES+KMAI+++ +PIL+VYPF+Q++FVKGMTLGAVKS Sbjct: 240 ASDANAFRGTSGEDHSRTVSPESIKMAISMITIIPILLVYPFVQRFFVKGMTLGAVKS 297 >Q5WIY1.1 Q5WIY1_BACSK Polysaccharide ABC transporter permease Length = 304 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 180/271 (66%), Positives = 230/271 (84%), Gaps = 3/271 (1%) Query: 34 PFLNVLAISLNDSVDSVRGGITIYPREFTWDNYLKIFTFSGLVTGFKISALRTVAGTLLG 93 PFLNVLAISLNDS D+VRGGI I+PRE+T +NY IF + LVTGF S LRT+ GT+LG Sbjct: 34 PFLNVLAISLNDSTDTVRGGIYIWPREWTLENYRTIFQYDHLVTGFINSVLRTIIGTVLG 93 Query: 94 LISASMLAFTVSRPDFQGRKFVSTFLAMTMYISGGMIPVYMLVKDLGMMNSFAVYIVPGL 153 + S++M+AFT+SR DFQGRKFVST L +T+Y +GG+IP YML+++L ++N+F VY++PG+ Sbjct: 94 IFSSAMVAFTLSRADFQGRKFVSTMLVLTLYFTGGLIPGYMLMRELNLINTFWVYVLPGM 153 Query: 154 VSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYLRVILPLLKPALATISLFLAVGQWN 213 V+AF++ ++RSF+DGLPY+LQESAK+DGANDFTI+ R+I+PL P LATI+LF+AVGQWN Sbjct: 154 VNAFHIIIVRSFMDGLPYSLQESAKMDGANDFTIFWRIIMPLCTPVLATIALFVAVGQWN 213 Query: 214 AWFDTYLYNGSSPHLTTLQYELMKVLQTTTSGNNGD---YRSNIASMASNQVSPESLKMA 270 AWFDTYLYNGS+P LTTLQYELMK+LQ TT G +GD YRS A+ VSPES+KMA Sbjct: 214 AWFDTYLYNGSNPDLTTLQYELMKILQNTTMGGSGDANAYRSISGDQAAQTVSPESIKMA 273 Query: 271 ITIVVTVPILMVYPFIQKYFVKGMTLGAVKS 301 I++V VPIL+VYPF+Q++FV+GMTLGAVKS Sbjct: 274 ISMVTVVPILLVYPFLQRFFVQGMTLGAVKS 304 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,561,130,640 Number of extensions: 58238218 Number of successful extensions: 235102 Number of sequences better than 1.0e-05: 5520 Number of HSP's gapped: 228334 Number of HSP's successfully gapped: 5521 Length of query: 301 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 166 Effective length of database: 1,788,859,178 Effective search space: 296950623548 Effective search space used: 296950623548 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)