BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0167.0002.p (378 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDL8.1 B3KDL8_9BACI Transglutaminase domain protein 377 e-103 B1D5S4.1 B1D5S4_9BACL Transglutaminase domain protein 251 7e-65 C3HHN9.1 C3HHN9_BACTU S-layer protein / Peptidoglycan endo-beta-... 235 5e-60 B3Z9Q2.1 B3Z9Q2_BACCE Putative protease 235 7e-60 Q81RP6.1 Q81RP6_BACAN Protease, putative 234 8e-60 >B3KDL8.1 B3KDL8_9BACI Transglutaminase domain protein Length = 380 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/384 (51%), Positives = 260/384 (67%), Gaps = 14/384 (3%) Query: 2 KKRYTLVKAMLGGML--VCAALP-PALYWGWDHAYAASTSAVLQSGAEMAQKLTAAMNNR 58 + R T+VK + G L AA+P PA YA S AV++S + QKL AM++R Sbjct: 3 RSRGTIVKLLFIGTLAVTVAAVPEPA---NLSDVYATSNKAVVKSVHAIQQKLLTAMSDR 59 Query: 59 RENITFVYEGKTTNLKSQVQKAIDQAMGSDPYLYYIIDSYAFSYRGSSRSAKVTVQVAYR 118 + + FVY+G+T +LKSQ++ A+DQAM SDPY++Y I SY++ YRG+S SA VTV+++YR Sbjct: 60 QSTVRFVYQGETKSLKSQLKDALDQAMASDPYIHYTIASYSYDYRGTSSSANVTVRLSYR 119 Query: 119 ETLQQTALVNKQVKTLLQQIITPGMNQHQKVKVIHDWVVLHLQYDNTYRKYTAYEGLQTG 178 ET +QT VN+ +L+QII PGMN H+KVK IHDWVV +L+YD T KYTAY+GL TG Sbjct: 120 ETAEQTNYVNQHTDRILKQIIKPGMNDHEKVKAIHDWVVRNLKYDTTLTKYTAYDGLYTG 179 Query: 179 SAVCQGYSLLTYKLLLGAGIPNKIVEGTA----KPEGGVAQSHAWNLVQLDGRWYHLDTT 234 S VCQGYSLLT+KLL AGI NKIVEGTA PEG Q HAWNLV LDG+WYHLDTT Sbjct: 180 STVCQGYSLLTHKLLKEAGIQNKIVEGTAYASDNPEG---QLHAWNLVLLDGKWYHLDTT 236 Query: 235 WDDPTPSPEGGVSTVYYMRTDAQMRRDHSWTKSYPAASVGYAQTLSELVSRGGQSVPVYQ 294 W+DP P + VS YY+RTD QM RDH+W KSYP A+ Y TL+ L ++ Y+ Sbjct: 237 WNDPVPDRDNEVSYTYYLRTDEQMGRDHTWVKSYPKANTLYRNTLAGLAAKDRSKAGSYE 296 Query: 295 ELQKKLDYRLYEEDEVITSAAELNTLVREAAASGKQSLLFRYRGSEKLLKIDLQGL-YSL 353 ++K L+Y+LY+ +++S +L LV+ A A G + L+FR+ GSE+ L LQ L Sbjct: 297 AIKKDLEYQLYDARAIVSSHLQLQPLVKAAKAEGSRKLVFRFDGSERELVSVLQQLQLKN 356 Query: 354 GLENLAYTSSPFDNTGDLKVYVTW 377 L ++ Y + F+NTGDL+V + W Sbjct: 357 NLGSIKYYHNAFENTGDLRVQIIW 380 >B1D5S4.1 B1D5S4_9BACL Transglutaminase domain protein Length = 380 Score = 251 bits (642), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 140/352 (39%), Positives = 196/352 (55%), Gaps = 16/352 (4%) Query: 33 YAASTSAVLQSGAEMAQKLTAAMNNRRENITFVYEGKTTNLKSQVQKAIDQAMGSDPYLY 92 +A+++S + ++ +L + +R E+ T Y+G L +Q I+ A+ D Y Sbjct: 31 FASASSGGGGTIDQLEDELASQFQSRSEHFTLQYKGDKHKLSDGLQNTINLALAQDDYTA 90 Query: 93 YIIDSYAFSYRGSSRSAKVTVQVAYRETLQQTALVNKQVKTLLQQIITPGMNQHQKVKVI 152 YI+DSY ++ R + + ++ YRET QTA V+ V ++QIITP MN+H+KVK I Sbjct: 91 YILDSYLYTIRSWGNLSTIKLEARYRETTDQTAAVDAMVSKAIKQIITPQMNEHEKVKAI 150 Query: 153 HDWVVLHLQYDNTYRKYTAYEGLQTGSAVCQGYSLLTYKLLLGAGIPNKIVEGTAKPEGG 212 HDW+V LQYD T + YTAY+ L TG+AVCQGYSLL YK+L GIP I EG K Sbjct: 151 HDWIVNRLQYDETLKHYTAYDALTTGTAVCQGYSLLAYKMLKAVGIPVLIAEGKVK---- 206 Query: 213 VAQSHAWNLVQLDGRWYHLDTTWDDP------TPSPEGGVSTVYYMRTDAQMRRDHSWTK 266 HAWN+VQL G WYHLD TWDDP T E +S YY++TD +MR DH W K Sbjct: 207 -TGDHAWNMVQLGGNWYHLDMTWDDPVVKQAGTQQTESRLSYNYYLKTDDEMRVDHQWIK 265 Query: 267 SYPAASVGYAQTLSELVSRGGQSVPVYQELQKKLDYRLYEEDEVITSAAELNTLVREAAA 326 +YP A+ Y LS+L S VY +L L E + + S EL +REA Sbjct: 266 TYPTANHSYGSELSKLKSTDSGKADVYAKLITDLGLHWTEPENTVASLVELEQEIREAVM 325 Query: 327 SGKQSLLFRY-RGSEKLLKIDLQGLYSLGLENLAYTS--SPFDNTGDLKVYV 375 + + FRY +GS+ L DL + + ++ Y++ P+ N G + V V Sbjct: 326 EQQTGMKFRYLQGSQ--LATDLPTAFKVAHVSVRYSARYEPYGNDGSMLVQV 375 >C3HHN9.1 C3HHN9_BACTU S-layer protein / Peptidoglycan endo-beta-N-acetylglucosaminidase Length = 386 Score = 235 bits (599), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 135/374 (36%), Positives = 208/374 (55%), Gaps = 24/374 (6%) Query: 16 LVCAALPPALYWGWDHA----YAAS--TSAVLQSGAEMAQ----KLTAAMNNRRENITFV 65 + AAL + G HA YAA+ T A QS A++ +L ++NR ENIT Sbjct: 8 VTAAALCSTIVMGGLHASSVSYAATNPTVATTQSDAKLLNDFRTELKKQIDNREENITIT 67 Query: 66 YEGKTTNLKS---QVQKAIDQAMGSDPYLYYIIDSYAFSYRGSSRSAKVTVQVAYRETLQ 122 Y+ K N +S Q+ ++ + +D Y+ Y + S +S +G + T+QV YRE+ + Sbjct: 68 YKTKDRNARSIMDQLYGEFNKIVDADEYVKYNVASTKYSIKGLPGNYTFTLQVKYRESKE 127 Query: 123 QTALVNKQVKTLLQQIITPGMNQHQKVKVIHDWVVLHLQYDNTYRKYTAYEGLQTGSAVC 182 QT V Q K ++ I+ PGM++H+KVK IHD+VV H+ YD +Y+ YTAYE L SAVC Sbjct: 128 QTQYVKSQAKAIIGSIVKPGMDEHEKVKAIHDYVVKHVSYDTSYQAYTAYEALANRSAVC 187 Query: 183 QGYSLLTYKLLLGAGIPNKIVEGTAKPEGGVAQSHAWNLVQLDGRWYHLDTTWDDPTPSP 242 QGY+LLTY+LL AGI N+IV GT G Q+HAWNLV ++ +WYHLDTT+DDP P Sbjct: 188 QGYTLLTYELLKEAGIQNRIVTGT-----GNGQAHAWNLVNIENKWYHLDTTFDDPVPDK 242 Query: 243 EGGVSTVYYMRTDAQMRRDHSWTKS-YPAASVGYAQTLSELVSRGGQSVPVYQELQKKLD 301 G V+ Y+ +D Q+ +DH W +S YPAA+ Y L+ + G Y+++ K+ + Sbjct: 243 AGRVTYSYFNMSDEQLSKDHDWDRSKYPAATTSYFNELTNKIKAGSSKTATYEQMLKETN 302 Query: 302 YRLYEEDEVITSAAELNTLVREAAASGKQSLLFRYRGSEKLLKIDLQGL-----YSLGLE 356 + + +E +++ AS + + RY+ S D++ + + G + Sbjct: 303 LKYLSAQYGADNYSEFKEKLQQQFASKPEKVEVRYKQSMDGTMQDIKKVLNEINWPKGAK 362 Query: 357 NLAYTSSPFDNTGD 370 ++Y +P+ D Sbjct: 363 RVSYQVAPYSAMAD 376 >B3Z9Q2.1 B3Z9Q2_BACCE Putative protease Length = 386 Score = 235 bits (599), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 208/372 (55%), Gaps = 24/372 (6%) Query: 18 CAALPPALYWGWDHA----YAAS--TSAVLQSGAEM----AQKLTAAMNNRRENITFVYE 67 AAL + G HA YAA+ T A LQS A++ ++L ++NR ENIT Y+ Sbjct: 10 AAALCSTIVMGGLHASSVSYAATNPTVATLQSDAKLLNDFKKELKKQIDNREENITIAYK 69 Query: 68 GKTTNLKS---QVQKAIDQAMGSDPYLYYIIDSYAFSYRGSSRSAKVTVQVAYRETLQQT 124 K N ++ Q+ ++ + +D Y+ Y + S +S +G + T+QV YRE+ +QT Sbjct: 70 TKDRNARNIMDQLYGEFNKIVDADEYVKYNVASTRYSIKGLPGNYTFTLQVKYRESKEQT 129 Query: 125 ALVNKQVKTLLQQIITPGMNQHQKVKVIHDWVVLHLQYDNTYRKYTAYEGLQTGSAVCQG 184 V Q K ++ I+ PGM++H+KVK IHD+VV H+ YD +Y+ YTAYE L SAVCQG Sbjct: 130 QYVKSQAKAIIGSIVKPGMDEHEKVKAIHDYVVKHVSYDTSYQAYTAYEALANRSAVCQG 189 Query: 185 YSLLTYKLLLGAGIPNKIVEGTAKPEGGVAQSHAWNLVQLDGRWYHLDTTWDDPTPSPEG 244 Y+LLTY+LL AGI N IV GT G Q+HAWNLV ++ +WYHLDTT+DDP P G Sbjct: 190 YTLLTYELLKEAGIQNHIVTGT-----GNGQAHAWNLVNIENKWYHLDTTFDDPVPDKAG 244 Query: 245 GVSTVYYMRTDAQMRRDHSWTKS-YPAASVGYAQTLSELVSRGGQSVPVYQELQKKLDYR 303 V+ Y+ +D Q+ +DH W +S YPAA+ Y L+ + G Y+++ K+ + + Sbjct: 245 RVTHSYFNMSDEQLSKDHDWDRSKYPAATTSYFNELTNKIKAGSSKTATYEQMLKETNLK 304 Query: 304 LYEEDEVITSAAELNTLVREAAASGKQSLLFRYRGSEKLLKIDLQGL-----YSLGLENL 358 + +E +++ AS + + RY+ S D++ + + G + + Sbjct: 305 YLSAQYGADNYSEFKKKLQQQFASKPEKVEVRYKQSMDGTMQDIKKVLNEINWPKGAKRV 364 Query: 359 AYTSSPFDNTGD 370 +Y +P+ D Sbjct: 365 SYQVAPYSAMAD 376 >Q81RP6.1 Q81RP6_BACAN Protease, putative Length = 386 Score = 234 bits (598), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 210/374 (56%), Gaps = 24/374 (6%) Query: 16 LVCAALPPALYWGWDHA----YAAS--TSAVLQSGAEM----AQKLTAAMNNRRENITFV 65 + AAL + G HA YAA+ T A LQS A++ ++L ++NR ENIT Sbjct: 8 VTAAALCSTIVMGGLHASSVSYAATNPTVATLQSDAKLLNDFKKELKKQIDNREENITIT 67 Query: 66 YEGKTTNLKS---QVQKAIDQAMGSDPYLYYIIDSYAFSYRGSSRSAKVTVQVAYRETLQ 122 Y+ K N ++ ++ ++ + +D Y+ Y I S +S +G + T+QV YRE+ + Sbjct: 68 YKTKDRNARNIMDELYGEFNKIVDADEYVKYNIASTRYSIKGLPGNYTFTLQVKYRESKE 127 Query: 123 QTALVNKQVKTLLQQIITPGMNQHQKVKVIHDWVVLHLQYDNTYRKYTAYEGLQTGSAVC 182 QT V Q K ++ I+ PGM++H+KVK IHD+VV H+ YD +Y+ YTAYE L SAVC Sbjct: 128 QTQYVKSQAKAIIGSIVKPGMDEHEKVKAIHDYVVKHVSYDTSYQAYTAYEALANRSAVC 187 Query: 183 QGYSLLTYKLLLGAGIPNKIVEGTAKPEGGVAQSHAWNLVQLDGRWYHLDTTWDDPTPSP 242 QGY+LLTY+LL AGI N+IV GT G Q+H+WNLV ++ +WYHLDTT+DDP P Sbjct: 188 QGYTLLTYELLKEAGIQNRIVTGT-----GNGQAHSWNLVNIENKWYHLDTTFDDPVPDK 242 Query: 243 EGGVSTVYYMRTDAQMRRDHSWTKS-YPAASVGYAQTLSELVSRGGQSVPVYQELQKKLD 301 G V+ Y+ +D Q+ +DH W +S YPAA+ Y L+ + G Y+++ K+ + Sbjct: 243 AGRVTYSYFNMSDEQLSKDHDWDRSKYPAATTSYFNELTNKIKAGSSKTATYEQMLKETN 302 Query: 302 YRLYEEDEVITSAAELNTLVREAAASGKQSLLFRYRGSEKLLKIDLQGL-----YSLGLE 356 + + +E +++ AS + + RY+ S D++ + + G + Sbjct: 303 LKYLSAQYGADNYSEFKEKLQQQFASKPEKVEVRYKQSMDGTMQDIKKVLNEINWPKGAK 362 Query: 357 NLAYTSSPFDNTGD 370 ++Y +P+ D Sbjct: 363 RVSYQVAPYSAMAD 376 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.130 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,189,058,530 Number of extensions: 87840586 Number of successful extensions: 226006 Number of sequences better than 1.0e-05: 323 Number of HSP's gapped: 225526 Number of HSP's successfully gapped: 324 Length of query: 378 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 241 Effective length of database: 1,770,017,148 Effective search space: 426574132668 Effective search space used: 426574132668 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)