BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0166.0003.p
         (126 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1YKM9.1 B1YKM9_EXIS2 Response regulator receiver protein             123   6e-27
C0Z5E8.1 C0Z5E8_BREBN Putative uncharacterized protein                116   6e-25
B7GID9.1 B7GID9_ANOFW CheY-like receiver domain protein               114   3e-24
Q2BA78.1 Q2BA78_9BACI Two-component response regulator                113   5e-24
C4L3R2.1 C4L3R2_EXISA Response regulator receiver protein             111   2e-23

>B1YKM9.1 B1YKM9_EXIS2 Response regulator receiver protein
          Length = 125

 Score =  123 bits (308), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/123 (52%), Positives = 88/123 (71%), Gaps = 2/123 (1%)

Query: 1   MQKVLIVDDEEVLRMLIEDTLEDLENVEIHTAENGAEALTKLSGQLYDLVILDYMMPEMT 60
           M ++L+ +DE+VLRML+ DTLED E   I  A +G EA  K+  Q YDLV+LDYMMP MT
Sbjct: 1   MARILLAEDEDVLRMLVLDTLED-EGYTIDEATDGDEAYQKIMSQHYDLVLLDYMMPGMT 59

Query: 61  GIEVLEALDIE-QKNAMPILMLTAKAQENDRSKARDAGARFFMPKPFSPMELLQIVEGIL 119
           GIEV+E +     K  + I+MLTAK+Q++DR +A + GA +F  KPFSP+EL+ +V GIL
Sbjct: 60  GIEVIEKVRRHPDKQNLKIMMLTAKSQQSDRERAEEIGANYFFSKPFSPLELIDVVGGIL 119

Query: 120 HEN 122
            ++
Sbjct: 120 SDH 122


>C0Z5E8.1 C0Z5E8_BREBN Putative uncharacterized protein
          Length = 120

 Score =  116 bits (291), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/120 (52%), Positives = 88/120 (73%), Gaps = 2/120 (1%)

Query: 1   MQKVLIVDDEEVLRMLIEDTLEDLENVEIHTAENGAEALTKLSGQLYDLVILDYMMPEMT 60
           M  +++ +DE VLRMLI DTLED E  E+  A +G EAL K+    YDL+ILDYMMP++T
Sbjct: 1   MATIMLAEDEAVLRMLIGDTLED-EGHELDIACDGEEALQKIGQNEYDLIILDYMMPKLT 59

Query: 61  GIEVLEAL-DIEQKNAMPILMLTAKAQENDRSKARDAGARFFMPKPFSPMELLQIVEGIL 119
           G EVL+ L  ++ K A+ +L+L+AK+Q  ++ K R+AGA  FMPKPFSPM+L++ VE +L
Sbjct: 60  GFEVLQQLKQMDDKKAVKVLILSAKSQHAEQEKMREAGADDFMPKPFSPMDLVRKVEEML 119


>B7GID9.1 B7GID9_ANOFW CheY-like receiver domain protein
          Length = 124

 Score =  114 bits (285), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/121 (49%), Positives = 87/121 (71%), Gaps = 2/121 (1%)

Query: 1   MQKVLIVDDEEVLRMLIEDTLEDLENVEIHTAENGAEALTKLSGQLYDLVILDYMMPEMT 60
           M K+L+ +DEEVLRML+ DTLED E  +I  A +G EA+  +    YDL++LDYMMP  T
Sbjct: 1   MAKILLAEDEEVLRMLVVDTLED-EGHDIDEACDGEEAIEMIKQNEYDLILLDYMMPIYT 59

Query: 61  GIEVLEAL-DIEQKNAMPILMLTAKAQENDRSKARDAGARFFMPKPFSPMELLQIVEGIL 119
           G+EV++ +  +  K  + I+ML+AK+Q+ D+ +  DAGA +FM KP+SP+EL+Q +E IL
Sbjct: 60  GLEVIQQVRQMPDKKHVKIMMLSAKSQQADQQRVLDAGADYFMAKPYSPLELVQRIEEIL 119

Query: 120 H 120
           H
Sbjct: 120 H 120


>Q2BA78.1 Q2BA78_9BACI Two-component response regulator
          Length = 123

 Score =  113 bits (283), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 88/123 (71%), Gaps = 2/123 (1%)

Query: 1   MQKVLIVDDEEVLRMLIEDTLEDLENVEIHTAENGAEALTKLSGQLYDLVILDYMMPEMT 60
           M ++L+ +DE++LRMLI DTLED  + E+  A +G EAL       Y L+I+DYMMP  T
Sbjct: 1   MNRILLAEDEDILRMLIVDTLED-GDFEVDEAADGQEALDLFQSGDYSLLIIDYMMPVYT 59

Query: 61  GIEVLEALDI-EQKNAMPILMLTAKAQENDRSKARDAGARFFMPKPFSPMELLQIVEGIL 119
           G+EV+E +    +KN + ILML+AK+Q+ ++ +  +AGA +FM KPFSP+ELL+ VE IL
Sbjct: 60  GLEVIEKIRANSEKNHVKILMLSAKSQQFEQDRVLEAGADYFMAKPFSPLELLEKVEEIL 119

Query: 120 HEN 122
           +EN
Sbjct: 120 NEN 122


>C4L3R2.1 C4L3R2_EXISA Response regulator receiver protein
          Length = 120

 Score =  111 bits (278), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 86/120 (71%), Gaps = 2/120 (1%)

Query: 1   MQKVLIVDDEEVLRMLIEDTLEDLENVEIHTAENGAEALTKLSGQLYDLVILDYMMPEMT 60
           M K+L+ +DEEVLRML+ DTLED E  +I  A++G EA   +    YDLVI+D+MMP MT
Sbjct: 1   MVKILLAEDEEVLRMLVMDTLED-EGYDIDEAQDGIEAYRLIEENEYDLVIVDHMMPGMT 59

Query: 61  GIEVLEAL-DIEQKNAMPILMLTAKAQENDRSKARDAGARFFMPKPFSPMELLQIVEGIL 119
           G+EV+E +  +  +    ++MLTAK+Q++DR  A + G  +F+ KPFSP+EL++I+ GI+
Sbjct: 60  GLEVIEKVRKLPGRQETKVMMLTAKSQQSDRDCANEIGVDYFISKPFSPLELVKIIGGIV 119


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.134    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 670,154,139
Number of extensions: 23502802
Number of successful extensions: 170507
Number of sequences better than 1.0e-05: 25260
Number of HSP's gapped: 161985
Number of HSP's successfully gapped: 25416
Length of query: 126
Length of database: 3,060,696,203
Length adjustment: 91
Effective length of query: 35
Effective length of database: 2,203,383,838
Effective search space: 77118434330
Effective search space used: 77118434330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)