BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0165.0006.p (447 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KC63.1 B3KC63_9BACI Regulatory protein GntR HTH 600 e-169 B1DA22.1 B1DA22_9BACL Transcriptional regulator, GntR family wit... 596 e-168 A9U7Y3.1 A9U7Y3_PHYPA Predicted protein (Fragment) 471 e-131 C2R1S0.1 C2R1S0_BACCE Putative uncharacterized protein 436 e-120 C3E3U9.1 C3E3U9_BACTU Putative uncharacterized protein 435 e-120 >B3KC63.1 B3KC63_9BACI Regulatory protein GntR HTH Length = 449 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 291/449 (64%), Positives = 346/449 (77%), Gaps = 2/449 (0%) Query: 1 VKKYLEVLSDMEKRIKGGQYSPGQKLPSVRSAAEFYSCSVSTVLRAYGELERTHAIYSVP 60 ++KYL +L+++E I GQY PGQKLPSVR AA Y CS+STVLRAY ELE+ HAIYSV Sbjct: 1 MQKYLSILTELETNISEGQYRPGQKLPSVRRAAAMYGCSISTVLRAYAELEKRHAIYSVS 60 Query: 61 QSGYYMVEQXXXXXXXXXXXIVDFASASPDLNVFPYLDFQHCLNKAIDRYKYHLFTYGDA 120 QSGYY+V++ ++DF+SASPD++VFPYLDFQHCLNKAID YKY LFTYGD Sbjct: 61 QSGYYVVDRPKSEEDGSVHAMIDFSSASPDVHVFPYLDFQHCLNKAIDTYKYELFTYGDP 120 Query: 121 LGLDTLRHTLVSHLAEYQVFAKVERIIITSGIQQALEILARMPFPNGRTEILVEQPGYDI 180 G++ LRHTLVSHLA QVF ER ++T+G QQALEILA+MPFP G++ ILVEQP Y+ Sbjct: 121 QGMEKLRHTLVSHLAGNQVFTTAERTVVTAGAQQALEILAKMPFPGGKSIILVEQPSYNN 180 Query: 181 YLRYLEAEGLPVSGIARSAAGIDLRELEAQFASGRFKFFYTMPRYHNPLGTSYSTEERKA 240 YL++LE EG PV GIAR+AAGIDL+ LE QF +GR KFFYTMPRYHNPLGTSY E+RKA Sbjct: 181 YLKFLENEGFPVIGIARTAAGIDLQALEEQFRTGRIKFFYTMPRYHNPLGTSYGAEQRKA 240 Query: 241 IARLAGKYDVYIVEDDYMADLGAEQRFDPIFAYEQTSHTVYLKSFSKIIFPGLRLGAAVV 300 IA LA +Y VYIVEDDYMADLG E+ +DPI+AY ++SH VYLKSFSKIIFPGLRLGA V+ Sbjct: 241 IANLATRYRVYIVEDDYMADLGEERGYDPIYAYNRSSHVVYLKSFSKIIFPGLRLGAVVL 300 Query: 301 PEPLLEAFRAYKGYTDTSLLSQAALEVYIKNGMYGHHRHKIKAMYAERIQAVYEALARHN 360 PE LLE F AYK Y DTSLLSQAALE+YI NGMY H+ KI + Y R+QA+ A+ ++ Sbjct: 301 PERLLETFHAYKSYGDTSLLSQAALEIYISNGMYERHKQKIYSQYETRMQALNAAVRQYE 360 Query: 361 TEGLIEVSAASSGVYLQFKLPVAVNLERLVKRLAERKISVVSGNGFYLSGYRNREKFLRI 420 G IE G+Y FKLP VNLERL++RL ER + VV G FYLS Y REKF+RI Sbjct: 361 GTGFIEAVPGDGGIYQLFKLPQTVNLERLIRRLKERNVHVVPGKLFYLSDYLMREKFIRI 420 Query: 421 SISRARLDQIDEGVRTIAQEAAR--GSGW 447 SISRARLDQI++GVR I +E R G+ W Sbjct: 421 SISRARLDQIEDGVRVIVEEVKREIGNLW 449 >B1DA22.1 B1DA22_9BACL Transcriptional regulator, GntR family with aminotransferase domain Length = 445 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 290/445 (65%), Positives = 350/445 (78%) Query: 1 VKKYLEVLSDMEKRIKGGQYSPGQKLPSVRSAAEFYSCSVSTVLRAYGELERTHAIYSVP 60 +KKY +LSDME++I+ G+Y PGQKLPSVR AAE Y CS+ST+ RAY ELE+ H IYSVP Sbjct: 1 MKKYNLILSDMEEKIRQGKYRPGQKLPSVRIAAEAYGCSISTITRAYAELEKRHVIYSVP 60 Query: 61 QSGYYMVEQXXXXXXXXXXXIVDFASASPDLNVFPYLDFQHCLNKAIDRYKYHLFTYGDA 120 QSGYY+V + ++ FA+ PDL+ FPYLDFQHCLNKAID YKY LFTYGD Sbjct: 61 QSGYYVVVKPGDWRDERDSSMIYFATVLPDLDAFPYLDFQHCLNKAIDIYKYDLFTYGDP 120 Query: 121 LGLDTLRHTLVSHLAEYQVFAKVERIIITSGIQQALEILARMPFPNGRTEILVEQPGYDI 180 LGL++ RHTLVSHLA QVF KVERI +TSG QQALEILA+MPFPNG +L+EQP YD Sbjct: 121 LGLESFRHTLVSHLASDQVFTKVERIFVTSGAQQALEILAKMPFPNGGEAVLLEQPSYDR 180 Query: 181 YLRYLEAEGLPVSGIARSAAGIDLRELEAQFASGRFKFFYTMPRYHNPLGTSYSTEERKA 240 YLR+LE E +PV GIAR+A+GIDL+ELE F SG KFFYTM RYHNPLGTSY+ EER+ Sbjct: 181 YLRFLETENIPVHGIARTASGIDLQELEHWFKSGSIKFFYTMSRYHNPLGTSYNAEERRT 240 Query: 241 IARLAGKYDVYIVEDDYMADLGAEQRFDPIFAYEQTSHTVYLKSFSKIIFPGLRLGAAVV 300 +A+LAGKY VYI+EDDYMADLGA+++ PI+A + + +Y+KSFSKIIFPGLRLGA V+ Sbjct: 241 MAKLAGKYGVYILEDDYMADLGADRQLGPIYASDGGEYVIYVKSFSKIIFPGLRLGAIVL 300 Query: 301 PEPLLEAFRAYKGYTDTSLLSQAALEVYIKNGMYGHHRHKIKAMYAERIQAVYEALARHN 360 PE LL+ F AYK Y DTSLLSQAALEVYIKNGMY H+HKI +YA R+ A+ E++ RHN Sbjct: 301 PERLLKTFYAYKIYPDTSLLSQAALEVYIKNGMYERHKHKIAGLYAARMLALNESVKRHN 360 Query: 361 TEGLIEVSAASSGVYLQFKLPVAVNLERLVKRLAERKISVVSGNGFYLSGYRNREKFLRI 420 GL+EV SG+Y FKL VN+E+L+KRLAER +SVVSG GFYLS Y ++EKFLRI Sbjct: 361 EPGLMEVPDIRSGIYTHFKLKQTVNVEQLLKRLAERNVSVVSGKGFYLSNYLDKEKFLRI 420 Query: 421 SISRARLDQIDEGVRTIAQEAARGS 445 SIS+ +QI+EGVR I +EA +GS Sbjct: 421 SISQTGPEQIEEGVRIITEEARKGS 445 >A9U7Y3.1 A9U7Y3_PHYPA Predicted protein (Fragment) Length = 331 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/331 (69%), Positives = 271/331 (81%) Query: 1 VKKYLEVLSDMEKRIKGGQYSPGQKLPSVRSAAEFYSCSVSTVLRAYGELERTHAIYSVP 60 +KKYL++L+D+E++I GQ+ GQKLPSVR+AA+ YSCSVSTV RAY ELE H IYS+ Sbjct: 1 MKKYLDILADIERKISEGQFESGQKLPSVRNAAKIYSCSVSTVTRAYTELESRHMIYSIS 60 Query: 61 QSGYYMVEQXXXXXXXXXXXIVDFASASPDLNVFPYLDFQHCLNKAIDRYKYHLFTYGDA 120 QSGYY+VE+ +DFASASPD ++FPYLDF+H LN+A+D Y+ HLFT G+A Sbjct: 61 QSGYYVVEKPGKGPDAAEGGQIDFASASPDPSLFPYLDFRHALNQALDTYQSHLFTCGEA 120 Query: 121 LGLDTLRHTLVSHLAEYQVFAKVERIIITSGIQQALEILARMPFPNGRTEILVEQPGYDI 180 GL+ LRHTLVSH AE QVFA+ ERII+T+G QALEILA+MPFPNG++ ILVEQP YDI Sbjct: 121 EGLERLRHTLVSHFAEDQVFARAERIIVTAGANQALEILAKMPFPNGKSIILVEQPSYDI 180 Query: 181 YLRYLEAEGLPVSGIARSAAGIDLRELEAQFASGRFKFFYTMPRYHNPLGTSYSTEERKA 240 YLRYLEAEG+PV GI+R+ AGIDL++LE +F G KFFYTM RYH+PLGTS+S EERKA Sbjct: 181 YLRYLEAEGIPVCGISRTTAGIDLQQLEEKFKHGGIKFFYTMSRYHSPLGTSFSREERKA 240 Query: 241 IARLAGKYDVYIVEDDYMADLGAEQRFDPIFAYEQTSHTVYLKSFSKIIFPGLRLGAAVV 300 IARLAGKYDVY+VEDDYMADLG E DPI+AY SH +YLKSFSKIIFPGLRLGAAV+ Sbjct: 241 IARLAGKYDVYVVEDDYMADLGEEPGTDPIYAYNGMSHVIYLKSFSKIIFPGLRLGAAVL 300 Query: 301 PEPLLEAFRAYKGYTDTSLLSQAALEVYIKN 331 PE LL+AF YK Y DTS LSQAALEVYIK+ Sbjct: 301 PEKLLKAFCEYKRYADTSQLSQAALEVYIKS 331 >C2R1S0.1 C2R1S0_BACCE Putative uncharacterized protein Length = 456 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 214/443 (48%), Positives = 304/443 (68%), Gaps = 8/443 (1%) Query: 3 KYLEVLSDMEKRIKGGQYSPGQKLPSVRSAAEFYSCSVSTVLRAYGELERTHAIYSVPQS 62 KYL +L+D+EK I+ G+ + GQKLPS+RS Y C+ +TV+RA ELE+ H IYSVPQS Sbjct: 3 KYLHILNDIEKMIQNGEINEGQKLPSIRSLVAQYECNKATVIRALHELEKRHIIYSVPQS 62 Query: 63 GYYMVEQXXXXXXXXXXXIVDFASASPDLNVFPYLDFQHCLNKAIDRYKYHLFTYGDALG 122 GYY+V++ I+DFAS++PD +VFPYLDFQHC+NKAID YK LF YG G Sbjct: 63 GYYVVKKSGSTIENKE--IIDFASSAPDPDVFPYLDFQHCINKAIDTYKNDLFVYGTPKG 120 Query: 123 LDTLRHTLVSHLAEYQVFAKVERIIITSGIQQALEILARMPFPNGRTEILVEQPGYDIYL 182 L +L + LA YQVF K + I ITSG+QQAL IL +PF N ILVEQP Y +Y+ Sbjct: 121 LPSLIPVIQKQLANYQVFTKEDNIFITSGVQQALAILTSIPFSNENETILVEQPTYHLYI 180 Query: 183 RYLEAEGLPVSGIARSAAGIDLRELEAQFASGRFKFFYTMPRYHNPLGTSYSTEERKAIA 242 YLE +PV GI R+ GIDL ELE F +G+ KFFYT+PRYH+PLGTSYS +E++ I Sbjct: 181 EYLEINKVPVIGIQRTNEGIDLNELERIFRTGKIKFFYTIPRYHHPLGTSYSKDEKEKIV 240 Query: 243 RLAGKYDVYIVEDDYMADLGAEQRFDPIFAYEQTSHTVYLKSFSKIIFPGLRLGAAVVPE 302 LA KY+V+IVEDDY+ADL + + DP+++ + ++H +YLKS+SKIIFPGLR+G AV+P Sbjct: 241 LLAKKYNVFIVEDDYLADLETDSKADPLYSLDHSNHVIYLKSYSKIIFPGLRVGVAVIPP 300 Query: 303 PLLEAFRAYKGY--TDTSLLSQAALEVYIKNGMYGHHRHKIKAMYAERIQAVYEALARHN 360 + AF YK D+ ++SQAALE+YIK+GM+ H++KIK+ Y R + + EAL R Sbjct: 301 VISSAFHTYKKILDIDSPMISQAALEIYIKSGMFERHKNKIKSSYNNRSKKLAEALERMQ 360 Query: 361 TEGLIEVS---AASSGVYLQFKLPVAVNLERLVKRLAERKISVVSGNGFYLSGYRNREKF 417 +E + + + G++ ++ E L++RL+E +ISV + + YL G+ +++ Sbjct: 361 SENPLLFTYKKQNTIGIHTCLEVHKTSISEMLIQRLSEMQISVDTIDKNYLKGFP-KQRL 419 Query: 418 LRISISRARLDQIDEGVRTIAQE 440 L++++S + D+I+EG+R + +E Sbjct: 420 LKLNVSNVKEDRIEEGIRKVMEE 442 >C3E3U9.1 C3E3U9_BACTU Putative uncharacterized protein Length = 456 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 210/447 (46%), Positives = 302/447 (67%), Gaps = 8/447 (1%) Query: 3 KYLEVLSDMEKRIKGGQYSPGQKLPSVRSAAEFYSCSVSTVLRAYGELERTHAIYSVPQS 62 KYL +L+D+E IK G+ G+KLPS+RS Y C+ +TV+RA ELE+ H IYSVPQS Sbjct: 3 KYLHILNDIENMIKNGEIREGKKLPSIRSLVTQYECNKATVIRALHELEKRHIIYSVPQS 62 Query: 63 GYYMVEQXXXXXXXXXXXIVDFASASPDLNVFPYLDFQHCLNKAIDRYKYHLFTYGDALG 122 GYY+V++ I+DFAS++PD +VFPYLDFQHC+NKAID YK LF YG G Sbjct: 63 GYYVVKKSESTIENNE--IIDFASSAPDPDVFPYLDFQHCINKAIDTYKNDLFVYGTPKG 120 Query: 123 LDTLRHTLVSHLAEYQVFAKVERIIITSGIQQALEILARMPFPNGRTEILVEQPGYDIYL 182 L +L + LA YQVF K E I ITSG+QQAL IL +PFPNG +L+EQP Y +Y+ Sbjct: 121 LPSLIPVIQKQLANYQVFTKEENIFITSGVQQALAILTSIPFPNGNETVLIEQPTYHLYI 180 Query: 183 RYLEAEGLPVSGIARSAAGIDLRELEAQFASGRFKFFYTMPRYHNPLGTSYSTEERKAIA 242 YLE +PV GI R+ GIDL ELE F +G+ KFFYT+PRYH+PLGTSYS +E++ I Sbjct: 181 DYLEINKVPVIGIKRTNEGIDLNELEQIFQTGKIKFFYTIPRYHHPLGTSYSKDEKEKIT 240 Query: 243 RLAGKYDVYIVEDDYMADLGAEQRFDPIFAYEQTSHTVYLKSFSKIIFPGLRLGAAVVPE 302 LA KY+V+IVEDDY+ADL + + DP+++ + SH +YLKS+SKIIFPGLR+G AV+P Sbjct: 241 LLAKKYNVFIVEDDYLADLETDSKADPLYSLDNCSHVIYLKSYSKIIFPGLRVGVAVIPP 300 Query: 303 PLLEAFRAYKGY--TDTSLLSQAALEVYIKNGMYGHHRHKIKAMYAERIQAVYEALARHN 360 + AF YK D+ ++SQAALE+Y+K+GM+ H++KIK+ Y +R + + E L R Sbjct: 301 SIANAFYTYKKILDIDSPMISQAALEIYLKSGMFERHKNKIKSSYNDRSKKLAEVLERMY 360 Query: 361 TEG---LIEVSAASSGVYLQFKLPVAVNLERLVKRLAERKISVVSGNGFYLSGYRNREKF 417 +E + G++ ++ + L++RL+E +IS+ + + Y+ G+ +++ Sbjct: 361 SENPHLFTHKKQNTIGIHTCLEVHKTSISDMLIQRLSEMQISIDTIDKNYVRGFP-KQRL 419 Query: 418 LRISISRARLDQIDEGVRTIAQEAARG 444 L++++S + D+I+EG+R + +E + Sbjct: 420 LKLNVSNVKEDRIEEGIRKVMEEIKQA 446 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,502,704,934 Number of extensions: 100910268 Number of successful extensions: 270201 Number of sequences better than 1.0e-05: 4402 Number of HSP's gapped: 261521 Number of HSP's successfully gapped: 4486 Length of query: 447 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 308 Effective length of database: 1,751,175,118 Effective search space: 539361936344 Effective search space used: 539361936344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)