BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0165.0004.p (317 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K378.1 B3K378_9BACI ABC transporter related 368 e-100 Q4MID5.1 Q4MID5_BACCE ABC transporter, ATP-binding protein 325 5e-87 B5V638.1 B5V638_BACCE ABC transporter, ATP-binding protein 324 5e-87 C2R188.1 C2R188_BACCE ABC transporter, ATP-binding protein 324 7e-87 B9IRY8.1 B9IRY8_BACCQ Abc transporter, atp-binding protein 324 7e-87 >B3K378.1 B3K378_9BACI ABC transporter related Length = 307 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/297 (59%), Positives = 234/297 (78%) Query: 18 VIEMNRVSKIFNDKKAVDGISFTIGKGSITAVLGPNGAGKTTMLSMLLGLLAPTEGTVKV 77 + E+ +V+K+F KKAV+ +SFTI KGSITA+LGPNGAGK+T +SM+LGL +EG V + Sbjct: 9 IAELRQVTKMFGSKKAVNQVSFTIEKGSITAILGPNGAGKSTAISMMLGLKDASEGKVLL 68 Query: 78 FGLSPKDVKVRERSGAMLQEVSVMDRLKVREIIALIRSYYPQPMDMEFLVRATGLAPADL 137 FG SPKD+KVRE+ GAMLQEVSVMD L+ REII LIR YYP P+ ++ + +GL P +L Sbjct: 69 FGQSPKDLKVREKIGAMLQEVSVMDGLRTREIINLIRGYYPNPLSLDDIALLSGLTPEEL 128 Query: 138 NRYAEKLSGGQKRSLAFALALAGNPQLLFLDEPTVGLDTTARRHFWDTVRELAAGGTTIL 197 N++A K+SGGQKR L+FALA+AGNP+LLF DEPTVGLDT+ARR FW TVR+LA G TIL Sbjct: 129 NKWAIKMSGGQKRKLSFALAIAGNPELLFFDEPTVGLDTSARRLFWQTVRKLADQGKTIL 188 Query: 198 FTTHYLQEAEEIADRILLFSQGTLVADGSPEEIKARMVKQSLSFLPAGDAATLRGQLLKL 257 FTTHYLQEA+++ADRILLF QG + ADG+PE IKA++ ++S+SF+ D ++ L ++ Sbjct: 189 FTTHYLQEADDMADRILLFHQGQVAADGTPEAIKAKLTRRSVSFIVDADHRQVKELLREV 248 Query: 258 APVIDCYDKDGRIHVATENTDEALRAIFTGGLAVKNVRIHQGSLDEAFEQLTRNHEE 314 V D ++ +GR++ T++TD AL A+F GLAV++VRI QGSLDEAF+QLT + E Sbjct: 249 PGVTDVFENNGRLNAVTDDTDTALAALFRAGLAVRDVRIDQGSLDEAFDQLTMDQGE 305 >Q4MID5.1 Q4MID5_BACCE ABC transporter, ATP-binding protein Length = 300 Score = 325 bits (832), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 162/303 (53%), Positives = 215/303 (70%), Gaps = 5/303 (1%) Query: 15 MSHVIEMNRVSKIFNDKKAVDGISFTIGKGSITAVLGPNGAGKTTMLSMLLGLLAPTEGT 74 M +IE+N VSK F KKAV+ +SF + KG I A+LGPNGAGKTT +SM+LGL PTEGT Sbjct: 1 MEKIIEVNSVSKTFKHKKAVNNVSFHVNKGEIVALLGPNGAGKTTTMSMMLGLKDPTEGT 60 Query: 75 VKVFGLSPKDVKVRERSGAMLQEVSVMDRLKVREIIALIRSYYPQPMDMEFLVRATGLAP 134 V FG SPK VR R GAMLQEVSV+D + V E I L RSYY P+ E L++ + L Sbjct: 61 VSTFGKSPKHRDVRNRIGAMLQEVSVIDSITVEEAIELFRSYYTNPVAKEMLLQLSNLK- 119 Query: 135 ADLNRYAEKLSGGQKRSLAFALALAGNPQLLFLDEPTVGLDTTARRHFWDTVRELAAGGT 194 ++ + EKLSGGQKR L FALALAGNP LLFLDEPTVG+D T+RR FW+T+R+LA+ G Sbjct: 120 SERKQRCEKLSGGQKRRLNFALALAGNPDLLFLDEPTVGMDITSRRTFWETIRKLASEGK 179 Query: 195 TILFTTHYLQEAEEIADRILLFSQGTLVADGSPEEIKARMVKQSLSFLPAGDAATLRGQL 254 TI+ TTHYL+EA+ +A+RILLF+ G ++ADG+P E+KA + +++++F ++ +L Sbjct: 180 TIILTTHYLEEADALANRILLFANGKIIADGTPNEMKATISRKTITFY---SKESIPAKL 236 Query: 255 LKLAP-VIDCYDKDGRIHVATENTDEALRAIFTGGLAVKNVRIHQGSLDEAFEQLTRNHE 313 LK P V + K+G + TE+TD L+AI+ L V +V I +GSLDEAFEQ N + Sbjct: 237 LKELPNVTEVQSKEGHFTLTTEDTDATLKAIYQKNLPVTDVSIERGSLDEAFEQFVANQK 296 Query: 314 EDM 316 E++ Sbjct: 297 EEI 299 >B5V638.1 B5V638_BACCE ABC transporter, ATP-binding protein Length = 300 Score = 324 bits (831), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 162/303 (53%), Positives = 216/303 (71%), Gaps = 5/303 (1%) Query: 15 MSHVIEMNRVSKIFNDKKAVDGISFTIGKGSITAVLGPNGAGKTTMLSMLLGLLAPTEGT 74 M +IE+N VSK F KKAV+ +SF + KG I A+LGPNGAGKTT +SM+LGL PTEGT Sbjct: 1 MEKIIEVNSVSKTFKHKKAVNNVSFHVNKGEIVALLGPNGAGKTTTMSMMLGLKDPTEGT 60 Query: 75 VKVFGLSPKDVKVRERSGAMLQEVSVMDRLKVREIIALIRSYYPQPMDMEFLVRATGLAP 134 V +FG SPK VR R GAMLQEVSV+D + V E I L RSYY P+ E L++ + L Sbjct: 61 VSIFGKSPKHRDVRNRLGAMLQEVSVIDSITVEEAIELFRSYYTNPIAKETLLQLSNLK- 119 Query: 135 ADLNRYAEKLSGGQKRSLAFALALAGNPQLLFLDEPTVGLDTTARRHFWDTVRELAAGGT 194 ++ + EKLSGGQKR L FALALAGNP LLFLDEPTVG+D T+RR FW+T+R+LA+ G Sbjct: 120 SERKQRCEKLSGGQKRRLNFALALAGNPDLLFLDEPTVGMDITSRRTFWETIRKLASEGK 179 Query: 195 TILFTTHYLQEAEEIADRILLFSQGTLVADGSPEEIKARMVKQSLSFLPAGDAATLRGQL 254 TI+ TTHYL+EA+ +A+RILLF+ G ++ADG+P+E+KA + +++++F T +L Sbjct: 180 TIILTTHYLEEADALANRILLFANGKIIADGTPDEMKATISRKTITFYSKESIPT---KL 236 Query: 255 LKLAP-VIDCYDKDGRIHVATENTDEALRAIFTGGLAVKNVRIHQGSLDEAFEQLTRNHE 313 LK P V + K+G + TE+TD L+AI+ L V +V + +GSLDEAFEQ N + Sbjct: 237 LKELPNVTEVQSKEGHFTLTTEDTDATLKAIYQKNLPVTDVSVERGSLDEAFEQFVANQK 296 Query: 314 EDM 316 E++ Sbjct: 297 EEI 299 >C2R188.1 C2R188_BACCE ABC transporter, ATP-binding protein Length = 300 Score = 324 bits (830), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 161/303 (53%), Positives = 215/303 (70%), Gaps = 5/303 (1%) Query: 15 MSHVIEMNRVSKIFNDKKAVDGISFTIGKGSITAVLGPNGAGKTTMLSMLLGLLAPTEGT 74 M +IE+N VSK F KKAV+ +SF + KG I A+LGPNGAGKTT +SM+LGL PTEGT Sbjct: 1 MEKIIEVNSVSKTFKHKKAVNNVSFHVNKGEIVAMLGPNGAGKTTTMSMMLGLKDPTEGT 60 Query: 75 VKVFGLSPKDVKVRERSGAMLQEVSVMDRLKVREIIALIRSYYPQPMDMEFLVRATGLAP 134 V FG SPK VR R GAMLQEVSV+D + V E I L RSYY P+ E L++ + L Sbjct: 61 VSTFGKSPKHRDVRNRIGAMLQEVSVIDSITVEEAIELFRSYYTNPVAKETLLQLSNLK- 119 Query: 135 ADLNRYAEKLSGGQKRSLAFALALAGNPQLLFLDEPTVGLDTTARRHFWDTVRELAAGGT 194 ++ + EKLSGGQKR L FALALAGNP LLFLDEPTVG+D T+RR FW+T+R+LA+ G Sbjct: 120 SERKQRCEKLSGGQKRRLNFALALAGNPNLLFLDEPTVGMDITSRRTFWETIRKLASEGK 179 Query: 195 TILFTTHYLQEAEEIADRILLFSQGTLVADGSPEEIKARMVKQSLSFLPAGDAATLRGQL 254 TI+ TTHYL+EA+ +A+RILLF+ G ++ADG+P E+KA + +++++F ++ +L Sbjct: 180 TIILTTHYLEEADALANRILLFANGKIIADGTPNEMKATISRKTITFY---SKESIPAKL 236 Query: 255 LKLAP-VIDCYDKDGRIHVATENTDEALRAIFTGGLAVKNVRIHQGSLDEAFEQLTRNHE 313 LK P V + K+G + TE+TD L+AI+ L V +V + +GSLDEAFEQ N + Sbjct: 237 LKELPNVTEVQSKEGHFTLTTEDTDATLKAIYQKNLPVTDVSVERGSLDEAFEQFVANQK 296 Query: 314 EDM 316 E++ Sbjct: 297 EEI 299 >B9IRY8.1 B9IRY8_BACCQ Abc transporter, atp-binding protein Length = 300 Score = 324 bits (830), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 161/303 (53%), Positives = 216/303 (71%), Gaps = 5/303 (1%) Query: 15 MSHVIEMNRVSKIFNDKKAVDGISFTIGKGSITAVLGPNGAGKTTMLSMLLGLLAPTEGT 74 M +IE+N VSK F KKAV+ +SF + KG I A+LGPNGAGKTT +SM+LGL PTEGT Sbjct: 1 MEKIIEVNSVSKTFKHKKAVNNVSFHVNKGEIVALLGPNGAGKTTTMSMMLGLKDPTEGT 60 Query: 75 VKVFGLSPKDVKVRERSGAMLQEVSVMDRLKVREIIALIRSYYPQPMDMEFLVRATGLAP 134 V +FG SPK VR R GAMLQEVSV+D + V E I L RSYY P+ E L++ + L Sbjct: 61 VSIFGKSPKHRDVRNRLGAMLQEVSVIDSITVEEAIELFRSYYTNPVAKETLLQLSNLE- 119 Query: 135 ADLNRYAEKLSGGQKRSLAFALALAGNPQLLFLDEPTVGLDTTARRHFWDTVRELAAGGT 194 ++ + EKLSGGQKR L FALALAGNP LLFLDEPTVG+D T+RR FW+T+R+LA+ G Sbjct: 120 SERKQRCEKLSGGQKRRLNFALALAGNPDLLFLDEPTVGMDITSRRTFWETIRKLASEGK 179 Query: 195 TILFTTHYLQEAEEIADRILLFSQGTLVADGSPEEIKARMVKQSLSFLPAGDAATLRGQL 254 TI+ TTHYL+EA+ +A+RILLF+ G ++ADG+P E+KA + +++++F ++ +L Sbjct: 180 TIILTTHYLEEADALANRILLFANGKIIADGTPNEMKATISRKTITFY---SKESIPAKL 236 Query: 255 LKLAP-VIDCYDKDGRIHVATENTDEALRAIFTGGLAVKNVRIHQGSLDEAFEQLTRNHE 313 LK P V + K+G + TE+TD L+AI+ L V +V + +GSLDEAFEQ N + Sbjct: 237 LKELPNVTEVQSKEGHFTLTTEDTDATLKAIYQKNLPVTDVSVERGSLDEAFEQFVANQK 296 Query: 314 EDM 316 E++ Sbjct: 297 EEI 299 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,797,399,305 Number of extensions: 74681538 Number of successful extensions: 571546 Number of sequences better than 1.0e-05: 93095 Number of HSP's gapped: 455035 Number of HSP's successfully gapped: 100934 Length of query: 317 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 182 Effective length of database: 1,788,859,178 Effective search space: 325572370396 Effective search space used: 325572370396 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)