BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0165.0003.p (246 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K377.1 B3K377_9BACI ABC-2 type transporter 365 3e-99 C1PE80.1 C1PE80_BACCO ABC-2 type transporter 340 9e-92 O07017.1 YVFS_BACSU Putative transport permease yvfS 332 2e-89 C3BSZ3.1 C3BSZ3_9BACI ABC-2 type transporter 291 4e-77 C3BB29.1 C3BB29_BACMY ABC-2 type transporter 291 4e-77 >B3K377.1 B3K377_9BACI ABC-2 type transporter Length = 248 Score = 365 bits (936), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 171/243 (70%), Positives = 203/243 (83%) Query: 3 RLIAMQCKAEMLRIFRNPYYVFWSLLMPILFYFIFTRVVNTGTDDVSKWQAHYLMSMAAF 62 +LI +QC+ E+LR+ RNPYY+FWSL MPILFYFIFTRVVNTG DD +WQAHYLMSMA+F Sbjct: 5 KLITLQCRMELLRMVRNPYYIFWSLAMPILFYFIFTRVVNTGADDAGQWQAHYLMSMASF 64 Query: 63 SVMGSAIMTLGIRLVQERTQGWNTFIRITPLPSSVYFAGKMFGQTIMHLFSVLCIFVAGY 122 SVMG+AIM+LGIRLVQER QGW ++R+TPLP SVYF GKMF QT+MHL ++ IFVAGY Sbjct: 65 SVMGTAIMSLGIRLVQERVQGWAVYMRVTPLPGSVYFFGKMFVQTVMHLLCIIVIFVAGY 124 Query: 123 LINGVALTPGQWVLSGLWILAGSLPFLALGTLVGFMKRADTASGVSNVLYMGLAVAGGMW 182 LINGV+LT GQW+LSGLWIL S+PFLA+GTL+G MKR DTASGVSN +Y+GLAV GGMW Sbjct: 125 LINGVSLTFGQWLLSGLWILIASVPFLAIGTLIGSMKRVDTASGVSNGIYLGLAVTGGMW 184 Query: 183 MPLEILPKVMQRIGHWLPSYNYGEGAWEIVGGGYPQWSNILILLGYLAVFMLLSVYIRKK 242 P+E +P +MQ IG W+PSY++G GAW IV G P N ++L GYL VFMLLS YIRKK Sbjct: 185 FPIEAMPSIMQAIGKWMPSYHFGGGAWSIVRGEAPGLDNFMVLAGYLVVFMLLSTYIRKK 244 Query: 243 QEA 245 Q+A Sbjct: 245 QQA 247 >C1PE80.1 C1PE80_BACCO ABC-2 type transporter Length = 245 Score = 340 bits (871), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 153/245 (62%), Positives = 196/245 (80%) Query: 2 MRLIAMQCKAEMLRIFRNPYYVFWSLLMPILFYFIFTRVVNTGTDDVSKWQAHYLMSMAA 61 M+ +QCK E+ R+ RN Y+VFWSL MPI+FY+IFT+VV+T D + W+AHYLMSM A Sbjct: 1 MKAFQLQCKMEIKRVLRNRYFVFWSLAMPIVFYYIFTKVVDTHAPDPAAWKAHYLMSMTA 60 Query: 62 FSVMGSAIMTLGIRLVQERTQGWNTFIRITPLPSSVYFAGKMFGQTIMHLFSVLCIFVAG 121 FSVMGS+IMTLGIR+VQER QGW F+R+TPLP S+Y + +M GQ+++H+FS+ IF AG Sbjct: 61 FSVMGSSIMTLGIRIVQERAQGWAAFMRLTPLPDSIYLSARMAGQSVIHVFSICMIFFAG 120 Query: 122 YLINGVALTPGQWVLSGLWILAGSLPFLALGTLVGFMKRADTASGVSNVLYMGLAVAGGM 181 ++N V+L P +W +SG WIL GSLPFL++GTL+G MK+ +TA+ +SNVLYM LAV GGM Sbjct: 121 AILNRVSLAPAEWAMSGGWILLGSLPFLSIGTLIGCMKKVETAAAISNVLYMLLAVCGGM 180 Query: 182 WMPLEILPKVMQRIGHWLPSYNYGEGAWEIVGGGYPQWSNILILLGYLAVFMLLSVYIRK 241 WMP+E++PK MQ I HWLPSY++G GAWEIV GG P W NIL+LL Y VFMLLS YI++ Sbjct: 181 WMPIEVMPKTMQNIAHWLPSYHFGSGAWEIVQGGMPGWKNILVLLTYFVVFMLLSKYIQR 240 Query: 242 KQEAV 246 KQE V Sbjct: 241 KQETV 245 >O07017.1 YVFS_BACSU Putative transport permease yvfS Length = 245 Score = 332 bits (851), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 150/245 (61%), Positives = 194/245 (79%) Query: 2 MRLIAMQCKAEMLRIFRNPYYVFWSLLMPILFYFIFTRVVNTGTDDVSKWQAHYLMSMAA 61 M ++ Q AEM R+ RN Y+V WSL+MPI FY+ FT VVNT D W+AHYLMSM Sbjct: 1 MNVLQKQSIAEMKRVLRNKYFVLWSLIMPIAFYYFFTNVVNTNVPDQRAWEAHYLMSMTV 60 Query: 62 FSVMGSAIMTLGIRLVQERTQGWNTFIRITPLPSSVYFAGKMFGQTIMHLFSVLCIFVAG 121 FSVMGS+IMTLGIR+VQER+QGW FIR+TPLP +Y + +M GQ+++H+ S+ IF+ G Sbjct: 61 FSVMGSSIMTLGIRMVQERSQGWAAFIRLTPLPDHIYLSAQMIGQSVIHVLSITVIFLFG 120 Query: 122 YLINGVALTPGQWVLSGLWILAGSLPFLALGTLVGFMKRADTASGVSNVLYMGLAVAGGM 181 +IN +AL+P +W++SGLWIL G+LPFLALGTL+G M++ +TA+G+SNVLYM LA+ GGM Sbjct: 121 AIINDIALSPFEWMMSGLWILFGALPFLALGTLIGLMRKVETAAGISNVLYMLLALGGGM 180 Query: 182 WMPLEILPKVMQRIGHWLPSYNYGEGAWEIVGGGYPQWSNILILLGYLAVFMLLSVYIRK 241 WMP E++P +MQ IG WLPSY++G GAWE+V GG P W NILIL+ Y+ +FMLLS YIR+ Sbjct: 181 WMPFEVMPDMMQSIGQWLPSYHFGSGAWELVRGGSPTWKNILILIAYMMLFMLLSKYIRR 240 Query: 242 KQEAV 246 KQEAV Sbjct: 241 KQEAV 245 >C3BSZ3.1 C3BSZ3_9BACI ABC-2 type transporter Length = 239 Score = 291 bits (744), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 132/240 (55%), Positives = 181/240 (75%), Gaps = 1/240 (0%) Query: 7 MQCKAEMLRIFRNPYYVFWSLLMPILFYFIFTRVVNTGTDDVSKWQAHYLMSMAAFSVMG 66 MQCK E+LR FRN ++F+SLLMP+LFY+IFT V+ + W+AHYL+SMA FS++G Sbjct: 1 MQCKIEILRTFRNKLFIFFSLLMPVLFYYIFTNVIQVPQNG-DAWKAHYLISMATFSIVG 59 Query: 67 SAIMTLGIRLVQERTQGWNTFIRITPLPSSVYFAGKMFGQTIMHLFSVLCIFVAGYLING 126 +A+ + G+RL QE+ QGW ++ITPLP Y K+ QT+++ FS+L IF+AG LIN Sbjct: 60 TALFSFGVRLSQEKGQGWTHLLKITPLPEGAYLTAKIISQTVVNAFSILVIFIAGMLINN 119 Query: 127 VALTPGQWVLSGLWILAGSLPFLALGTLVGFMKRADTASGVSNVLYMGLAVAGGMWMPLE 186 V LT GQW+ +GLW+L G PFLALGT+VG +K+AD ASG++N+L M LAV GG+WMP+E Sbjct: 120 VELTIGQWIGAGLWLLIGVTPFLALGTIVGSIKKADAASGLANILNMSLAVLGGLWMPIE 179 Query: 187 ILPKVMQRIGHWLPSYNYGEGAWEIVGGGYPQWSNILILLGYLAVFMLLSVYIRKKQEAV 246 + PKV++ IG W P+Y++G GAW+IV G W NI IL GY +F+++S+YIRK+QEAV Sbjct: 180 VFPKVLRTIGEWTPTYHFGSGAWDIVAGKSIGWENIAILGGYFLIFVVISIYIRKRQEAV 239 >C3BB29.1 C3BB29_BACMY ABC-2 type transporter Length = 239 Score = 291 bits (744), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 132/240 (55%), Positives = 181/240 (75%), Gaps = 1/240 (0%) Query: 7 MQCKAEMLRIFRNPYYVFWSLLMPILFYFIFTRVVNTGTDDVSKWQAHYLMSMAAFSVMG 66 MQCK E+LR FRN ++F+SLLMP+LFY+IFT V+ + W+AHYL+SMA FS++G Sbjct: 1 MQCKIEILRTFRNKLFIFFSLLMPVLFYYIFTNVIQVPQNG-DAWKAHYLISMATFSIVG 59 Query: 67 SAIMTLGIRLVQERTQGWNTFIRITPLPSSVYFAGKMFGQTIMHLFSVLCIFVAGYLING 126 +A+ + G+RL QE+ QGW ++ITPLP Y K+ QT+++ FS+L IF+AG LIN Sbjct: 60 TALFSFGVRLSQEKGQGWTHLLKITPLPEGAYLTAKIISQTVVNAFSILVIFIAGILINN 119 Query: 127 VALTPGQWVLSGLWILAGSLPFLALGTLVGFMKRADTASGVSNVLYMGLAVAGGMWMPLE 186 V LT GQW+ +GLW+L G PFLALGT+VG +K+AD ASG++N+L M LAV GG+WMP+E Sbjct: 120 VELTIGQWIGAGLWLLIGVTPFLALGTIVGSIKKADAASGLANILNMSLAVLGGLWMPIE 179 Query: 187 ILPKVMQRIGHWLPSYNYGEGAWEIVGGGYPQWSNILILLGYLAVFMLLSVYIRKKQEAV 246 + PKV++ IG W P+Y++G GAW+IV G W NI IL GY +F+++S+YIRK+QEAV Sbjct: 180 VFPKVLRTIGEWTPTYHFGSGAWDIVAGKSIGWENIAILGGYFLIFVVISIYIRKRQEAV 239 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,546,382,654 Number of extensions: 66855035 Number of successful extensions: 215639 Number of sequences better than 1.0e-05: 364 Number of HSP's gapped: 215689 Number of HSP's successfully gapped: 364 Length of query: 246 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 114 Effective length of database: 1,817,122,223 Effective search space: 207151933422 Effective search space used: 207151933422 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)