BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0165.0001.p (200 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A7GV99.1 A7GV99_BACCN Two component transcriptional regulator, L... 252 1e-65 Q09KI8.1 Q09KI8_BACCE Two-component response regulator 252 1e-65 Q81JU8.1 Q81JU8_BACAN DNA-binding response regulator 246 7e-64 C3P2B2.1 C3P2B2_BACAA DNA-binding response regulator 246 7e-64 C3LFM6.1 C3LFM6_BACAC DNA-binding response regulator 246 7e-64 >A7GV99.1 A7GV99_BACCN Two component transcriptional regulator, LuxR family Length = 200 Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 122/200 (61%), Positives = 154/200 (77%) Query: 1 MIRIVIAEDQRLLRGAMASLLDLXXXXXXXXXXXXXXXXLAVIERLQPDVCLMDIEMPYK 60 MIRI++AEDQR+LRGA+ +LLDL +IE+LQPDV +MDIEMP + Sbjct: 1 MIRIILAEDQRMLRGALGALLDLEDDMEVVGQAENGEEAFTLIEKLQPDVSIMDIEMPIQ 60 Query: 61 SGLEVAETLKAKGSATKVIILTTFARPGYLERGVKAGIQGYLLKDEPVDKLADAIRRVMD 120 SGL+VAETL+ K S+ KV+ILTTFARPGY ER +KAG+ GYLLKD P ++LA+AIR VM Sbjct: 61 SGLDVAETLQKKKSSCKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEELAEAIRNVMK 120 Query: 121 GHREVSPELVFGSLREENPLTDREREILKLAGGGQSAGEIAAVLHLSYGTVRNYISEILN 180 G RE+SPEL+FG +E+NPL+DRERE+L LA G++ +IA L+LS GTVRNYISE+L Sbjct: 121 GKREISPELMFGLWQEQNPLSDREREVLLLAKEGKTTNDIAKALYLSPGTVRNYISEVLT 180 Query: 181 KLEVKSRIEAVRLAEEKGWI 200 KL K+RIEA+ +AEEKGWI Sbjct: 181 KLNAKNRIEAITIAEEKGWI 200 >Q09KI8.1 Q09KI8_BACCE Two-component response regulator Length = 200 Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 122/200 (61%), Positives = 154/200 (77%) Query: 1 MIRIVIAEDQRLLRGAMASLLDLXXXXXXXXXXXXXXXXLAVIERLQPDVCLMDIEMPYK 60 MIRI++AEDQR+LRGA+ +LLDL +IE+LQPDV +MDIEMP + Sbjct: 1 MIRIILAEDQRMLRGALGALLDLEDDMEVVGQAENGEEAFTLIEKLQPDVSIMDIEMPIQ 60 Query: 61 SGLEVAETLKAKGSATKVIILTTFARPGYLERGVKAGIQGYLLKDEPVDKLADAIRRVMD 120 SGL+VAETL+ K S+ KV+ILTTFARPGY ER +KAG+ GYLLKD P ++LA+AIR VM Sbjct: 61 SGLDVAETLQKKKSSCKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEELAEAIRNVMK 120 Query: 121 GHREVSPELVFGSLREENPLTDREREILKLAGGGQSAGEIAAVLHLSYGTVRNYISEILN 180 G RE+SPEL+FG +E+NPL+DRERE+L LA G++ +IA L+LS GTVRNYISE+L Sbjct: 121 GKREISPELMFGLWQEQNPLSDREREVLLLAKEGKTTNDIAKALYLSPGTVRNYISEVLT 180 Query: 181 KLEVKSRIEAVRLAEEKGWI 200 KL K+RIEA+ +AEEKGWI Sbjct: 181 KLNAKNRIEAITIAEEKGWI 200 >Q81JU8.1 Q81JU8_BACAN DNA-binding response regulator Length = 200 Score = 246 bits (628), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 122/200 (61%), Positives = 153/200 (76%) Query: 1 MIRIVIAEDQRLLRGAMASLLDLXXXXXXXXXXXXXXXXLAVIERLQPDVCLMDIEMPYK 60 MIRI+IAEDQR+LRGA+ +LLDL L +IE L+PDV +MDIEMP + Sbjct: 1 MIRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESLKPDVSIMDIEMPIQ 60 Query: 61 SGLEVAETLKAKGSATKVIILTTFARPGYLERGVKAGIQGYLLKDEPVDKLADAIRRVMD 120 SGL+VAETLK + SA KV+ILTTFARPGY ER +KAG+ GYLLKD P + LA +IR VM Sbjct: 61 SGLDVAETLKKEKSACKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAASIRNVMK 120 Query: 121 GHREVSPELVFGSLREENPLTDREREILKLAGGGQSAGEIAAVLHLSYGTVRNYISEILN 180 G RE+S +L+FG +E+NPL+DRE+E+L LA G++A EIA L+LS GTVRNYISE+L Sbjct: 121 GKREISQDLMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLT 180 Query: 181 KLEVKSRIEAVRLAEEKGWI 200 KL+ K+RIEA+ +AEEKGWI Sbjct: 181 KLDAKNRIEAITIAEEKGWI 200 >C3P2B2.1 C3P2B2_BACAA DNA-binding response regulator Length = 200 Score = 246 bits (628), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 122/200 (61%), Positives = 153/200 (76%) Query: 1 MIRIVIAEDQRLLRGAMASLLDLXXXXXXXXXXXXXXXXLAVIERLQPDVCLMDIEMPYK 60 MIRI+IAEDQR+LRGA+ +LLDL L +IE L+PDV +MDIEMP + Sbjct: 1 MIRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESLKPDVSIMDIEMPIQ 60 Query: 61 SGLEVAETLKAKGSATKVIILTTFARPGYLERGVKAGIQGYLLKDEPVDKLADAIRRVMD 120 SGL+VAETLK + SA KV+ILTTFARPGY ER +KAG+ GYLLKD P + LA +IR VM Sbjct: 61 SGLDVAETLKKEKSACKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAASIRNVMK 120 Query: 121 GHREVSPELVFGSLREENPLTDREREILKLAGGGQSAGEIAAVLHLSYGTVRNYISEILN 180 G RE+S +L+FG +E+NPL+DRE+E+L LA G++A EIA L+LS GTVRNYISE+L Sbjct: 121 GKREISQDLMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLT 180 Query: 181 KLEVKSRIEAVRLAEEKGWI 200 KL+ K+RIEA+ +AEEKGWI Sbjct: 181 KLDAKNRIEAITIAEEKGWI 200 >C3LFM6.1 C3LFM6_BACAC DNA-binding response regulator Length = 200 Score = 246 bits (628), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 122/200 (61%), Positives = 153/200 (76%) Query: 1 MIRIVIAEDQRLLRGAMASLLDLXXXXXXXXXXXXXXXXLAVIERLQPDVCLMDIEMPYK 60 MIRI+IAEDQR+LRGA+ +LLDL L +IE L+PDV +MDIEMP + Sbjct: 1 MIRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESLKPDVSIMDIEMPIQ 60 Query: 61 SGLEVAETLKAKGSATKVIILTTFARPGYLERGVKAGIQGYLLKDEPVDKLADAIRRVMD 120 SGL+VAETLK + SA KV+ILTTFARPGY ER +KAG+ GYLLKD P + LA +IR VM Sbjct: 61 SGLDVAETLKKEKSACKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAASIRNVMK 120 Query: 121 GHREVSPELVFGSLREENPLTDREREILKLAGGGQSAGEIAAVLHLSYGTVRNYISEILN 180 G RE+S +L+FG +E+NPL+DRE+E+L LA G++A EIA L+LS GTVRNYISE+L Sbjct: 121 GKREISQDLMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLT 180 Query: 181 KLEVKSRIEAVRLAEEKGWI 200 KL+ K+RIEA+ +AEEKGWI Sbjct: 181 KLDAKNRIEAITIAEEKGWI 200 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 997,652,474 Number of extensions: 37263382 Number of successful extensions: 170648 Number of sequences better than 1.0e-05: 6575 Number of HSP's gapped: 167968 Number of HSP's successfully gapped: 6581 Length of query: 200 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 71 Effective length of database: 1,845,385,268 Effective search space: 131022354028 Effective search space used: 131022354028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)