BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0164.0018.p (258 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7L3.1 B3K7L3_9BACI Stage II sporulation protein R 229 2e-58 B1DEJ2.1 B1DEJ2_9BACL Stage II sporulation protein R 207 5e-52 Q5KUH5.1 Q5KUH5_GEOKA Stage II sporulation protein R (Pro-sigma-... 179 2e-43 C3IZ56.1 C3IZ56_9BACI Stage II sporulation protein R 179 2e-43 B7Y7D6.1 B7Y7D6_9BACI Stage II sporulation protein R 179 2e-43 >B3K7L3.1 B3K7L3_9BACI Stage II sporulation protein R Length = 218 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 115/230 (50%), Positives = 139/230 (60%), Gaps = 15/230 (6%) Query: 28 ILICFFMILMMAWEGQKTDAAVAEATIPQDSIRLRILANSDAAGDQQVKRQIRDSIVEQM 87 +L C FM++M AWEGQ+ D +V IPQ+SIRLRILANSD DQ VKR+IRD++VEQM Sbjct: 4 LLSCMFMVIM-AWEGQQIDTSVVGGPIPQESIRLRILANSDNPSDQLVKREIRDAVVEQM 62 Query: 88 NQWVALLEDPQSLEQARTLIRGHLPELNALVARELEERGIDYGYKVELGVVPFPTKMYGG 147 WV LE+PQSLE A+ L R HLPE+ LV EL +RGI Y Y VELGVVPFPTK+YGG Sbjct: 63 QLWVLQLENPQSLEDAKALTRQHLPEIRQLVGEELRKRGITYNYDVELGVVPFPTKLYGG 122 Query: 148 TVYPAGEYEAVRVTLGAGRGQNWWCVLFPPLCFIXXXXXXXXXXXXXXXXXXXXXXXXXX 207 TVYPAG+Y+A+R+TLG G+GQNWWCVLFPPLCFI Sbjct: 123 TVYPAGDYDALRITLGEGQGQNWWCVLFPPLCFI--------------DGGSGDAAAQPV 168 Query: 208 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRFFFWELLENIWSWISGLF 257 +VRFF W++ IW+W+ LF Sbjct: 169 ETGIQTVSADAGDDASPEEAPKKASESEPEVRFFLWDMFLGIWNWVVSLF 218 >B1DEJ2.1 B1DEJ2_9BACL Stage II sporulation protein R Length = 250 Score = 207 bits (528), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 96/168 (57%), Positives = 119/168 (70%), Gaps = 3/168 (1%) Query: 14 GRQDSLRVTFKYTAILICFFMILMMAWEGQKTDAAVAEATIPQDSIRLRILANSDAAGDQ 73 R +SL K A+LI +L+M+WE Q+TDAAV + IPQDSIRLRILANSD+ DQ Sbjct: 2 NRTNSLFYFRKSYALLIIVLFVLVMSWEQQRTDAAVVDTIIPQDSIRLRILANSDSPADQ 61 Query: 74 QVKRQIRDSIVEQMNQWVALLEDPQSLEQARTLIRGHLPELNALVARELEERGIDYGYKV 133 VKR +RD++V+ M+ WV PQ++E+AR + H+ E+ +VA L RG DY Y Sbjct: 62 AVKRVVRDAVVKAMDSWVT---GPQTIEEARQTVHDHMDEIEGIVAGVLASRGFDYSYHA 118 Query: 134 ELGVVPFPTKMYGGTVYPAGEYEAVRVTLGAGRGQNWWCVLFPPLCFI 181 ELG VPFPTKMY VYPAG YEA+ +TLG G+GQNWWCVLFPPLCFI Sbjct: 119 ELGQVPFPTKMYSNEVYPAGNYEALLITLGEGKGQNWWCVLFPPLCFI 166 >Q5KUH5.1 Q5KUH5_GEOKA Stage II sporulation protein R (Pro-sigma-E processing factor) Length = 295 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 91/167 (54%), Positives = 115/167 (68%), Gaps = 9/167 (5%) Query: 21 VTFKYTAILICFFMILM-----MAWEGQKTDA-AVAEATIPQDSIRLRILANSDAAGDQQ 74 +T K AI IC ++IL+ + G KTDA A A IP ++IRLRILANSDA DQQ Sbjct: 10 MTIKGNAIAICLYIILLTTGVLVELYGHKTDAGANAAVAIPDEAIRLRILANSDADEDQQ 69 Query: 75 VKRQIRDSIVEQMNQWVALLEDPQSLEQARTLIRGHLPELNALVARELEERGIDYGYKVE 134 +KR++RD++ Q+N WVA L S E+A+ +IR HLP++ VAR L + D YKVE Sbjct: 70 LKRKVRDAVNAQINGWVAEL---TSFEEAKRVIRSHLPDIERTVARVLRDEQSDQTYKVE 126 Query: 135 LGVVPFPTKMYGGTVYPAGEYEAVRVTLGAGRGQNWWCVLFPPLCFI 181 G V FPTK+YG VYPAG Y+AV +TLG G+G NWWCVLFPPLCF+ Sbjct: 127 FGPVHFPTKVYGNYVYPAGIYDAVLITLGEGKGANWWCVLFPPLCFL 173 >C3IZ56.1 C3IZ56_9BACI Stage II sporulation protein R Length = 287 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 91/167 (54%), Positives = 115/167 (68%), Gaps = 9/167 (5%) Query: 21 VTFKYTAILICFFMILM-----MAWEGQKTDA-AVAEATIPQDSIRLRILANSDAAGDQQ 74 +T K AI IC ++IL+ + G KTDA A A IP ++IRLRILANSDA DQQ Sbjct: 2 MTIKGNAIAICLYIILLTTGVLVELYGHKTDAGANAAVAIPDEAIRLRILANSDADEDQQ 61 Query: 75 VKRQIRDSIVEQMNQWVALLEDPQSLEQARTLIRGHLPELNALVARELEERGIDYGYKVE 134 +KR++RD++ Q+N WVA L S E+A+ +IR HLP++ VAR L + D YKVE Sbjct: 62 LKRKVRDAVNAQINGWVAEL---TSFEEAKRVIRSHLPDIERTVARVLRDEQSDQTYKVE 118 Query: 135 LGVVPFPTKMYGGTVYPAGEYEAVRVTLGAGRGQNWWCVLFPPLCFI 181 G V FPTK+YG VYPAG Y+AV +TLG G+G NWWCVLFPPLCF+ Sbjct: 119 FGPVHFPTKVYGNYVYPAGIYDAVLITLGEGKGANWWCVLFPPLCFL 165 >B7Y7D6.1 B7Y7D6_9BACI Stage II sporulation protein R Length = 287 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 91/167 (54%), Positives = 115/167 (68%), Gaps = 9/167 (5%) Query: 21 VTFKYTAILICFFMILM-----MAWEGQKTDA-AVAEATIPQDSIRLRILANSDAAGDQQ 74 +T K AI IC ++IL+ + G KTDA A A IP ++IRLRILANSDA DQQ Sbjct: 2 MTIKGNAIAICLYIILLTTGVLVELYGHKTDAGANAAVAIPDEAIRLRILANSDADEDQQ 61 Query: 75 VKRQIRDSIVEQMNQWVALLEDPQSLEQARTLIRGHLPELNALVARELEERGIDYGYKVE 134 +KR++RD++ Q+N WVA L S E+A+ +IR HLP++ VAR L + D YKVE Sbjct: 62 LKRKVRDAVNAQINGWVAEL---TSFEEAKRVIRSHLPDIERTVARVLRDEQSDQTYKVE 118 Query: 135 LGVVPFPTKMYGGTVYPAGEYEAVRVTLGAGRGQNWWCVLFPPLCFI 181 G V FPTK+YG VYPAG Y+AV +TLG G+G NWWCVLFPPLCF+ Sbjct: 119 FGPVHFPTKVYGNYVYPAGIYDAVLITLGEGKGANWWCVLFPPLCFL 165 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.139 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,227,888,691 Number of extensions: 44525872 Number of successful extensions: 122284 Number of sequences better than 1.0e-05: 185 Number of HSP's gapped: 122047 Number of HSP's successfully gapped: 185 Length of query: 258 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 125 Effective length of database: 1,807,701,208 Effective search space: 225962651000 Effective search space used: 225962651000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)