BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0164.0017.p (388 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7L4.1 B3K7L4_9BACI Cell cycle protein 440 e-122 B3K7L5.1 B3K7L5_9BACI Cell cycle protein 411 e-113 B1DDR0.1 B1DDR0_9BACL Cell cycle protein 267 1e-69 Q5WE77.1 Q5WE77_BACSK Cell division protein FtsW 192 3e-47 B4AH11.1 B4AH11_BACPU Rod shape-determining protein RodA 185 7e-45 >B3K7L4.1 B3K7L4_9BACI Cell cycle protein Length = 393 Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust. Identities = 218/387 (56%), Positives = 275/387 (71%), Gaps = 3/387 (0%) Query: 1 MLQRFKKIDGXXXXXXXXXXXXXXXXXYSVTHGRKDDGLHIQMIKWYGVGFVAFFGLSLF 60 MLQ+FKK+D YS T K +G H++M+ +Y VGF+AFFG+SL Sbjct: 1 MLQKFKKMDYVIVFVLVLMMGISITSIYSTTVDTKFEGSHLRMVAFYIVGFMAFFGISLL 60 Query: 61 DYRLLVKYAHYIYMLGVGILVVVSFVGKVKNGAKGWLEVGGLSLQPAELFKXXXXXXXXX 120 DYRLL+KYA YIY+ G+ +LV+V F+GK NGA+GW+ +G LS+QPAELFK Sbjct: 61 DYRLLIKYAKYIYLGGLAVLVLVMFIGKDINGAQGWIYIGSLSIQPAELFKLILIIFLSF 120 Query: 121 XXVRKNKDELLFWRDVVPLSLVALLPFAVVIIQNDLGNALSYMVILVGLLWIGRIKWSHA 180 VRKNK L FW+DVVP+ L+A +PF +V+ QNDLGNALSY++IL+GLLWIG +K+SHA Sbjct: 121 VLVRKNKPLLSFWKDVVPIGLLAFVPFVLVMAQNDLGNALSYVIILLGLLWIGNVKFSHA 180 Query: 181 XXXXXXXXXXXXXXXXXXXNYHEQMTSFLSETIGRKHFVARFDPWLVPELASSDDSYQTR 240 +YH+++ L I + H+V R DPWL PE A++ SY T Sbjct: 181 LIGLVLVAGVAFGGAQAYIHYHDEL---LESKILKPHWVERIDPWLYPEKATAKASYHTT 237 Query: 241 NAKIAIASGGLSGEGYMQGGSVQSGKIPVLYTDAIFAQIAEEFGFVGXXXXXXXXXXXXH 300 NAK+AIASGG+SGEGYMQG S+QSG++P Y+D+IF QIAEEFGF+G H Sbjct: 238 NAKLAIASGGMSGEGYMQGSSIQSGRVPYAYSDSIFVQIAEEFGFIGSSVLLLLYFILIH 297 Query: 301 RMIMIALECRERAGPFLIIGIVAMLLYQIFENIGAYIGLMPLTGITLPFISYGGTSIVIN 360 R+I+I+LE RERAGPFLIIGIVAM LYQIFENIG +IGLMPLTGITLPFISYGGTS+VI+ Sbjct: 298 RLILISLESRERAGPFLIIGIVAMFLYQIFENIGMFIGLMPLTGITLPFISYGGTSLVIS 357 Query: 361 MASMGIAMSVLLYGQDVEEDLPAPAVY 387 MAS+G+AMSV L+GQ+VEED+P P Y Sbjct: 358 MASLGVAMSVKLHGQEVEEDMPDPHAY 384 >B3K7L5.1 B3K7L5_9BACI Cell cycle protein Length = 395 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 206/389 (52%), Positives = 268/389 (68%), Gaps = 4/389 (1%) Query: 1 MLQRFKKIDGXXXXXXXXXXXXXXXXXYSVTHGRKD-DGLHIQMIKWYGVGFVAFFGLSL 59 MLQ+FKKID YS T +G HI+M +Y +GF AFFGLSL Sbjct: 1 MLQKFKKIDFVIVFVLLMLMVVSITSIYSATFDTAGFEGHHIKMAVFYILGFAAFFGLSL 60 Query: 60 FDYRLLVKYAHYIYMLGVGILVVVSFVGKVKNGAKGWLEVGGLSLQPAELFKXXXXXXXX 119 DYR+ KYA +IY+ G+ L++ SF+G+ KN A GW+ +G + +QPAELFK Sbjct: 61 IDYRIWNKYALHIYIGGLITLLLPSFIGQTKNNATGWINLGIVDIQPAELFKLVLIIFIT 120 Query: 120 XXXVRKNKDELLFWRDVVPLSLVALLPFAVVIIQNDLGNALSYMVILVGLLWIGRIKWSH 179 +RK+K L FWRD+VP+ + +PFA+V++QNDLGN LSY+VIL+GLLWIG +K+SH Sbjct: 121 YVLIRKDKSRLSFWRDIVPIGFLTFIPFAIVMVQNDLGNGLSYIVILLGLLWIGNVKFSH 180 Query: 180 AXXXXXXXXXXXXXXXXXXXNYHEQMT-SFLSETIGRKHFVARFDPWLVPELASSDDSYQ 238 A ++H+++ S + E+ R H++ R DPWLVPE A++ SY Sbjct: 181 ALIGLLLVAGIAFGGAQAYIHFHDEIKESKIMES--RGHWMERIDPWLVPEKATAKASYH 238 Query: 239 TRNAKIAIASGGLSGEGYMQGGSVQSGKIPVLYTDAIFAQIAEEFGFVGXXXXXXXXXXX 298 T NAK+AIASGG+SGEGY++G SVQS ++P Y+D+IF QIAEE+GF+G Sbjct: 239 TNNAKLAIASGGMSGEGYLEGSSVQSSRVPYTYSDSIFVQIAEEYGFIGSSVLLLLYFIL 298 Query: 299 XHRMIMIALECRERAGPFLIIGIVAMLLYQIFENIGAYIGLMPLTGITLPFISYGGTSIV 358 HRMI+I+LE RE+AGPFLIIGIVAMLLYQIFENIG +IGLMPLTGITLPFISYGGTS++ Sbjct: 299 IHRMILISLESREKAGPFLIIGIVAMLLYQIFENIGMFIGLMPLTGITLPFISYGGTSLI 358 Query: 359 INMASMGIAMSVLLYGQDVEEDLPAPAVY 387 INMA +G+AMSV L+GQ+VEED+P P Y Sbjct: 359 INMACLGVAMSVKLHGQEVEEDMPNPQTY 387 >B1DDR0.1 B1DDR0_9BACL Cell cycle protein Length = 382 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 147/380 (38%), Positives = 216/380 (56%), Gaps = 3/380 (0%) Query: 1 MLQRFKKIDGXXXXXXXXXXXXXXXXXYSVTHGRK-DDGLHIQMIKWYGVGFVAFFGLSL 59 ML + KKID S TH ++ + +Y GF+ ++ Sbjct: 1 MLNKLKKIDWGIVAILVCLMGISTILVRSATHNNPLYHNYDLKTVVFYIAGFLVAIMATV 60 Query: 60 FDYRLLVKYAHYIYMLGVGILVVVSFVGKVKNGAKGWLEV-GGLSLQPAELFKXXXXXXX 118 FDYR+L+K + +Y +GV +L+ V F G NGA GW ++ GG QPAE+ K Sbjct: 61 FDYRILLKSWYVLYGIGVALLIAVFFFGANINGASGWFKLPGGFLFQPAEIMKIIIIIGI 120 Query: 119 XXXXVRKNKDELLFWRDVVPLSLVALLPFAVVIIQNDLGNALSYMVILVGLLWIGRIKWS 178 R+ D L F D++P++ A LPF +V+IQ DLGNA+ Y+VI++G+LWIG +K++ Sbjct: 121 AYIMGRRQGDRLTFIEDLLPIAAFAFLPFLLVMIQPDLGNAIIYIVIVLGMLWIGNVKYT 180 Query: 179 HAXXXXXXXXXXXXXXXXXXXNYHEQMTSFLSETIGRKHFVARFDPWLVPELASSDDSYQ 238 H ++ ++ ++L + ++H+ R + +L P ASSDD +Q Sbjct: 181 HVLVGLTAVVAAVVLSISLFSMFNTEIETYLKDH-HKEHWYKRINTFLDPSQASSDDKHQ 239 Query: 239 TRNAKIAIASGGLSGEGYMQGGSVQSGKIPVLYTDAIFAQIAEEFGFVGXXXXXXXXXXX 298 + NAKIAI SGGLSG+GY+QG + IP Y+D+IF I EEFGF G Sbjct: 240 SENAKIAIGSGGLSGDGYLQGDMINGKFIPYPYSDSIFVVIGEEFGFQGSAILLLLYFLL 299 Query: 299 XHRMIMIALECRERAGPFLIIGIVAMLLYQIFENIGAYIGLMPLTGITLPFISYGGTSIV 358 +RMI+IA C + F++IGI +M ++QIF+NIG IGLMP+TGITLPFISYGGTS++ Sbjct: 300 IYRMILIAFRCYDNRAAFIVIGIASMYVFQIFQNIGMMIGLMPITGITLPFISYGGTSLL 359 Query: 359 INMASMGIAMSVLLYGQDVE 378 +NM +GI S+ + + E Sbjct: 360 LNMLCVGILFSINAHQEKYE 379 >Q5WE77.1 Q5WE77_BACSK Cell division protein FtsW Length = 386 Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 113/335 (33%), Positives = 177/335 (52%), Gaps = 13/335 (3%) Query: 41 IQMIKWYGVGFVAFFGLSLFDYRLLVKYAHYIYMLGVGILVVVSFVGKVKNGAKGWLEVG 100 ++ + WYG+G V + L D+ L ++ +Y +G+ +L+ V F G+ +NGA+ W+ Sbjct: 44 VRQLIWYGIGAVVIVAVMLVDFDLFRNFSIPVYAIGMVLLLAVEFFGEERNGAQRWV--- 100 Query: 101 GLSLQPAELFKXXXXXXXXXXXVR--KNKDELLFWRDVVPLS---LVALLPFAVVIIQND 155 +QP+E K + K+K + F D+V L LV+L PF +++ Q D Sbjct: 101 -FGIQPSEFMKIFLILALAHLLYKLTKDKQKRTFKEDMVVLGKILLVSLPPFFLILKQPD 159 Query: 156 LGNALSYMVILVGLLWIGRIKWSHAXXXXXXXXXXXXXXXXXXXNYHEQMTSFLSETIGR 215 LG AL ++ +L + I+W HE F SE + Sbjct: 160 LGTALVIGSVIATMLLMSGIRWR----ILLSLVGIAVLGIAFLVYMHEAHFEFFSEYLIE 215 Query: 216 KHFVARFDPWLVPELASSDDSYQTRNAKIAIASGGLSGEGYMQGGSVQSGKIPVLYTDAI 275 H + R WL P+ +S YQ A + I SG L G G+++G QS IP ++TD + Sbjct: 216 PHQLDRIYGWLDPDSDTSGIGYQLNQAILGIGSGQLFGAGFLEGMQTQSDVIPEIHTDFV 275 Query: 276 FAQIAEEFGFVGXXXXXXXXXXXXHRMIMIALECRERAGPFLIIGIVAMLLYQIFENIGA 335 F I EEFGF+G +RMIMI+L C G +L+ G+V +L++Q+F+NI Sbjct: 276 FTVIGEEFGFLGAMVLLVIYFLLFYRMIMISLTCNNLYGSYLVAGVVGLLVFQVFQNIAM 335 Query: 336 YIGLMPLTGITLPFISYGGTSIVINMASMGIAMSV 370 IGLMP+TG+ LPFISYGG++++ NM ++GI ++V Sbjct: 336 TIGLMPITGLALPFISYGGSALLTNMMAIGIVLNV 370 >B4AH11.1 B4AH11_BACPU Rod shape-determining protein RodA Length = 384 Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 104/332 (31%), Positives = 167/332 (50%), Gaps = 8/332 (2%) Query: 42 QMIKWYGVGFVAFFGLSLFDYRLLVKYAHYIYMLGVGILVVVSFVGKVKNGAKGWLEVGG 101 + I WY VGF + FDY LL + + ++ G+ ++++V F G +NG++ W+ G Sbjct: 44 RQIFWYIVGFGLMAAAAYFDYELLERLSFRLFTGGIFLIILVHFFGTSQNGSQRWISFGS 103 Query: 102 LSLQPAELFKXXXXXXXXXXXVRKNKDELLFWRDVVPLSLV---ALLPFAVVIIQNDLGN 158 + +QP+E K + F ++P S V ++PF +++IQ DLG Sbjct: 104 IKIQPSEFMKIFVILLLAAVLNQYKHQRFSFKESIIPTSKVVCWTVVPFFLILIQPDLGT 163 Query: 159 ALSYMVILVGLLWIGRIKWSHAXXXXXXXXXXXXXXXXXXXNYHEQMTSFLSETIGRKHF 218 AL + I L+ + I + E T + + H Sbjct: 164 ALVILSIAFTLMLVSGISSKMMAALMASFIALLSFLVYLHNEHFEHFTKII-----KPHQ 218 Query: 219 VARFDPWLVPELASSDDSYQTRNAKIAIASGGLSGEGYMQGGSVQSGKIPVLYTDAIFAQ 278 + R WL P+ S YQ + + + I SG L G G+ QG VQ G IP +TD IFA Sbjct: 219 LDRIYGWLSPDEFDSTYGYQLKQSMLGIGSGQLLGSGFTQGHQVQGGNIPEAHTDFIFAV 278 Query: 279 IAEEFGFVGXXXXXXXXXXXXHRMIMIALECRERAGPFLIIGIVAMLLYQIFENIGAYIG 338 I EEFGF+G +R+I +A+ G ++ G+V ++++Q+F+N+G IG Sbjct: 279 IGEEFGFIGASLLMCLYLMMIYRIIHVAMHANTLYGLYICAGVVGLIVFQVFQNVGMTIG 338 Query: 339 LMPLTGITLPFISYGGTSIVINMASMGIAMSV 370 LMP+TG+ LPFISYGG++++ NM ++G+ SV Sbjct: 339 LMPVTGLALPFISYGGSALLTNMIAIGLVFSV 370 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.144 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,945,099,751 Number of extensions: 72138486 Number of successful extensions: 235450 Number of sequences better than 1.0e-05: 3295 Number of HSP's gapped: 230467 Number of HSP's successfully gapped: 3854 Length of query: 388 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 250 Effective length of database: 1,760,596,133 Effective search space: 440149033250 Effective search space used: 440149033250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)