BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0164.0016.p (394 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7L4.1 B3K7L4_9BACI Cell cycle protein 448 e-124 B3K7L5.1 B3K7L5_9BACI Cell cycle protein 442 e-122 B1DDR0.1 B1DDR0_9BACL Cell cycle protein 258 8e-67 B4AH11.1 B4AH11_BACPU Rod shape-determining protein RodA 182 6e-44 A8FGL9.1 A8FGL9_BACP2 FtsW/RodA/SpoVE family cell division protein 181 1e-43 >B3K7L4.1 B3K7L4_9BACI Cell cycle protein Length = 393 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 225/393 (57%), Positives = 276/393 (70%), Gaps = 3/393 (0%) Query: 1 MLQKIKKIDGXXXXXXXXXXXXXXFSIYSVTHGRDKLDGAHLRMIKFYVLGIIAFFGLTF 60 MLQK KK+D SIYS T K +G+HLRM+ FY++G +AFFG++ Sbjct: 1 MLQKFKKMDYVIVFVLVLMMGISITSIYSTTV-DTKFEGSHLRMVAFYIVGFMAFFGISL 59 Query: 61 VDYRLLVKYALYIYVTGIGILVLVSFIGKEQNGAQGWIKFGGFSLQPAEXXXXXXXXXXX 120 +DYRLL+KYA YIY+ G+ +LVLV FIGK+ NGAQGWI G S+QPAE Sbjct: 60 LDYRLLIKYAKYIYLGGLAVLVLVMFIGKDINGAQGWIYIGSLSIQPAELFKLILIIFLS 119 Query: 121 XXXXRKHKNKLQFWQDVVPXXXXXXXXXXIVISQNDLGNALSYIVILVGLLWIGNIKFTH 180 RK+K L FW+DVVP +V++QNDLGNALSY++IL+GLLWIGN+KF+H Sbjct: 120 FVLVRKNKPLLSFWKDVVPIGLLAFVPFVLVMAQNDLGNALSYVIILLGLLWIGNVKFSH 179 Query: 181 XXXXXXXXXXXXXXXXXSYIHYHDEIKGFLTDIGRSHWVERFDPWLVPDEATAKASYHTK 240 +YIHYHDE+ + I + HWVER DPWL P++ATAKASYHT Sbjct: 180 ALIGLVLVAGVAFGGAQAYIHYHDEL--LESKILKPHWVERIDPWLYPEKATAKASYHTT 237 Query: 241 NAKLAIAXXXXXXXXXXXXXXVQTDRVPYTYSDSIFVQIAEEFGFVGSALVLLLYFILIH 300 NAKLAIA +Q+ RVPY YSDSIFVQIAEEFGF+GS+++LLLYFILIH Sbjct: 238 NAKLAIASGGMSGEGYMQGSSIQSGRVPYAYSDSIFVQIAEEFGFIGSSVLLLLYFILIH 297 Query: 301 RMILIALESKDRGGPFLIVGIVAMMLYQIFENIGAFIGLMPLTGITLPFISYGGTSLMIN 360 R+ILI+LES++R GPFLI+GIVAM LYQIFENIG FIGLMPLTGITLPFISYGGTSL+I+ Sbjct: 298 RLILISLESRERAGPFLIIGIVAMFLYQIFENIGMFIGLMPLTGITLPFISYGGTSLVIS 357 Query: 361 MASIGLVMSVRLHGQEVEEELPSPSVYTSPAKQ 393 MAS+G+ MSV+LHGQEVEE++P P Y A + Sbjct: 358 MASLGVAMSVKLHGQEVEEDMPDPHAYRPAAAK 390 >B3K7L5.1 B3K7L5_9BACI Cell cycle protein Length = 395 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 224/395 (56%), Positives = 271/395 (68%), Gaps = 1/395 (0%) Query: 1 MLQKIKKIDGXXXXXXXXXXXXXXFSIYSVTHGRDKLDGAHLRMIKFYVLGIIAFFGLTF 60 MLQK KKID SIYS T +G H++M FY+LG AFFGL+ Sbjct: 1 MLQKFKKIDFVIVFVLLMLMVVSITSIYSATFDTAGFEGHHIKMAVFYILGFAAFFGLSL 60 Query: 61 VDYRLLVKYALYIYVTGIGILVLVSFIGKEQNGAQGWIKFGGFSLQPAEXXXXXXXXXXX 120 +DYR+ KYAL+IY+ G+ L+L SFIG+ +N A GWI G +QPAE Sbjct: 61 IDYRIWNKYALHIYIGGLITLLLPSFIGQTKNNATGWINLGIVDIQPAELFKLVLIIFIT 120 Query: 121 XXXXRKHKNKLQFWQDVVPXXXXXXXXXXIVISQNDLGNALSYIVILVGLLWIGNIKFTH 180 RK K++L FW+D+VP IV+ QNDLGN LSYIVIL+GLLWIGN+KF+H Sbjct: 121 YVLIRKDKSRLSFWRDIVPIGFLTFIPFAIVMVQNDLGNGLSYIVILLGLLWIGNVKFSH 180 Query: 181 XXXXXXXXXXXXXXXXXSYIHYHDEIKGFLTDIGRSHWVERFDPWLVPDEATAKASYHTK 240 +YIH+HDEIK R HW+ER DPWLVP++ATAKASYHT Sbjct: 181 ALIGLLLVAGIAFGGAQAYIHFHDEIKESKIMESRGHWMERIDPWLVPEKATAKASYHTN 240 Query: 241 NAKLAIAXXXXXXXXXXXXXXVQTDRVPYTYSDSIFVQIAEEFGFVGSALVLLLYFILIH 300 NAKLAIA VQ+ RVPYTYSDSIFVQIAEE+GF+GS+++LLLYFILIH Sbjct: 241 NAKLAIASGGMSGEGYLEGSSVQSSRVPYTYSDSIFVQIAEEYGFIGSSVLLLLYFILIH 300 Query: 301 RMILIALESKDRGGPFLIVGIVAMMLYQIFENIGAFIGLMPLTGITLPFISYGGTSLMIN 360 RMILI+LES+++ GPFLI+GIVAM+LYQIFENIG FIGLMPLTGITLPFISYGGTSL+IN Sbjct: 301 RMILISLESREKAGPFLIIGIVAMLLYQIFENIGMFIGLMPLTGITLPFISYGGTSLIIN 360 Query: 361 MASIGLVMSVRLHGQEVEEELPSPSVYTS-PAKQG 394 MA +G+ MSV+LHGQEVEE++P+P Y S P+KQ Sbjct: 361 MACLGVAMSVKLHGQEVEEDMPNPQTYRSAPSKQA 395 >B1DDR0.1 B1DDR0_9BACL Cell cycle protein Length = 382 Score = 258 bits (659), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 147/379 (38%), Positives = 211/379 (55%), Gaps = 1/379 (0%) Query: 1 MLQKIKKIDGXXXXXXXXXXXXXXFSIYSVTHGRDKLDGAHLRMIKFYVLGIIAFFGLTF 60 ML K+KKID + S TH L+ + FY+ G + T Sbjct: 1 MLNKLKKIDWGIVAILVCLMGISTILVRSATHNNPLYHNYDLKTVVFYIAGFLVAIMATV 60 Query: 61 VDYRLLVKYALYIYVTGIGILVLVSFIGKEQNGAQGWIKF-GGFSLQPAEXXXXXXXXXX 119 DYR+L+K +Y G+ +L+ V F G NGA GW K GGF QPAE Sbjct: 61 FDYRILLKSWYVLYGIGVALLIAVFFFGANINGASGWFKLPGGFLFQPAEIMKIIIIIGI 120 Query: 120 XXXXXRKHKNKLQFWQDVVPXXXXXXXXXXIVISQNDLGNALSYIVILVGLLWIGNIKFT 179 R+ ++L F +D++P +V+ Q DLGNA+ YIVI++G+LWIGN+K+T Sbjct: 121 AYIMGRRQGDRLTFIEDLLPIAAFAFLPFLLVMIQPDLGNAIIYIVIVLGMLWIGNVKYT 180 Query: 180 HXXXXXXXXXXXXXXXXXSYIHYHDEIKGFLTDIGRSHWVERFDPWLVPDEATAKASYHT 239 H + ++ EI+ +L D + HW +R + +L P +A++ + + Sbjct: 181 HVLVGLTAVVAAVVLSISLFSMFNTEIETYLKDHHKEHWYKRINTFLDPSQASSDDKHQS 240 Query: 240 KNAKLAIAXXXXXXXXXXXXXXVQTDRVPYTYSDSIFVQIAEEFGFVGSALVLLLYFILI 299 +NAK+AI + +PY YSDSIFV I EEFGF GSA++LLLYF+LI Sbjct: 241 ENAKIAIGSGGLSGDGYLQGDMINGKFIPYPYSDSIFVVIGEEFGFQGSAILLLLYFLLI 300 Query: 300 HRMILIALESKDRGGPFLIVGIVAMMLYQIFENIGAFIGLMPLTGITLPFISYGGTSLMI 359 +RMILIA D F+++GI +M ++QIF+NIG IGLMP+TGITLPFISYGGTSL++ Sbjct: 301 YRMILIAFRCYDNRAAFIVIGIASMYVFQIFQNIGMMIGLMPITGITLPFISYGGTSLLL 360 Query: 360 NMASIGLVMSVRLHGQEVE 378 NM +G++ S+ H ++ E Sbjct: 361 NMLCVGILFSINAHQEKYE 379 >B4AH11.1 B4AH11_BACPU Rod shape-determining protein RodA Length = 384 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 104/338 (30%), Positives = 169/338 (50%), Gaps = 9/338 (2%) Query: 43 RMIKFYVLGIIAFFGLTFVDYRLLVKYALYIYVTGIGILVLVSFIGKEQNGAQGWIKFGG 102 R I +Y++G + DY LL + + ++ GI +++LV F G QNG+Q WI FG Sbjct: 44 RQIFWYIVGFGLMAAAAYFDYELLERLSFRLFTGGIFLIILVHFFGTSQNGSQRWISFGS 103 Query: 103 FSLQPAEXXXXXXXXXXXXXXXRKHKNKLQFWQDVVPXXXXXXXXXX---IVISQNDLGN 159 +QP+E + + F + ++P +++ Q DLG Sbjct: 104 IKIQPSEFMKIFVILLLAAVLNQYKHQRFSFKESIIPTSKVVCWTVVPFFLILIQPDLGT 163 Query: 160 ALSYIVILVGLLWIGNIKFTHXXXXXXXXXXXXXXXXXSYIHY-HDEIKGFLTDIGRSHW 218 AL + I L+ + I S++ Y H+E T I + H Sbjct: 164 ALVILSIAFTLMLVSGIS-----SKMMAALMASFIALLSFLVYLHNEHFEHFTKIIKPHQ 218 Query: 219 VERFDPWLVPDEATAKASYHTKNAKLAIAXXXXXXXXXXXXXXVQTDRVPYTYSDSIFVQ 278 ++R WL PDE + Y K + L I VQ +P ++D IF Sbjct: 219 LDRIYGWLSPDEFDSTYGYQLKQSMLGIGSGQLLGSGFTQGHQVQGGNIPEAHTDFIFAV 278 Query: 279 IAEEFGFVGSALVLLLYFILIHRMILIALESKDRGGPFLIVGIVAMMLYQIFENIGAFIG 338 I EEFGF+G++L++ LY ++I+R+I +A+ + G ++ G+V ++++Q+F+N+G IG Sbjct: 279 IGEEFGFIGASLLMCLYLMMIYRIIHVAMHANTLYGLYICAGVVGLIVFQVFQNVGMTIG 338 Query: 339 LMPLTGITLPFISYGGTSLMINMASIGLVMSVRLHGQE 376 LMP+TG+ LPFISYGG++L+ NM +IGLV SV + Sbjct: 339 LMPVTGLALPFISYGGSALLTNMIAIGLVFSVNIRSSS 376 >A8FGL9.1 A8FGL9_BACP2 FtsW/RodA/SpoVE family cell division protein Length = 384 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 107/342 (31%), Positives = 172/342 (50%), Gaps = 17/342 (4%) Query: 43 RMIKFYVLGIIAFFGL----TFVDYRLLVKYALYIYVTGIGILVLVSFIGKEQNGAQGWI 98 R I +Y++G FGL + DY LL + + ++ GI +++LV F G QNG+Q WI Sbjct: 44 RQIFWYIVG----FGLMAIAAYFDYELLERLSFRLFAGGIFLIILVHFFGTSQNGSQRWI 99 Query: 99 KFGGFSLQPAEXXXXXXXXXXXXXXXRKHKNKLQFWQDVVPXXXXXXXXXX---IVISQN 155 FG +QP+E + + F + ++P +++ Q Sbjct: 100 SFGSIKVQPSEFMKIFMILLLAAVLNQYKHQRFSFKESIIPTSKVVCWTVVPFLLILVQP 159 Query: 156 DLGNALSYIVILVGLLWIGNIKFTHXXXXXXXXXXXXXXXXXSYIHY-HDEIKGFLTDIG 214 DLG AL + I L+ + I S++ Y H+E T I Sbjct: 160 DLGTALVVLSIAFTLMLVSGIS-----SKMMAALTASFLAFLSFLVYLHNEHFEHFTKII 214 Query: 215 RSHWVERFDPWLVPDEATAKASYHTKNAKLAIAXXXXXXXXXXXXXXVQTDRVPYTYSDS 274 + H ++R WL PDE + Y K + L I VQ +P ++D Sbjct: 215 KPHQLDRIYGWLSPDEFDSTYGYQLKQSMLGIGSGQLSGSGFTKGHQVQGGNIPEAHTDF 274 Query: 275 IFVQIAEEFGFVGSALVLLLYFILIHRMILIALESKDRGGPFLIVGIVAMMLYQIFENIG 334 IF I EEFGF+G++L++ LY ++I+R+I +A+ + G ++ G+V ++++Q+F+N+G Sbjct: 275 IFAVIGEEFGFIGASLLMCLYLMMIYRIIHVAMHANTLYGLYICAGVVGLIVFQVFQNVG 334 Query: 335 AFIGLMPLTGITLPFISYGGTSLMINMASIGLVMSVRLHGQE 376 IGLMP+TG+ LPFISYGG++L+ NM +IGLV SV + Sbjct: 335 MTIGLMPVTGLALPFISYGGSALLTNMIAIGLVFSVNIRSSS 376 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.144 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,886,296,522 Number of extensions: 66089562 Number of successful extensions: 207287 Number of sequences better than 1.0e-05: 3294 Number of HSP's gapped: 206034 Number of HSP's successfully gapped: 3391 Length of query: 394 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 256 Effective length of database: 1,760,596,133 Effective search space: 450712610048 Effective search space used: 450712610048 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)