BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0164.0013.p (366 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7L8.1 B3K7L8_9BACI GTP-binding protein YchF 686 0.0 B1DEJ8.1 B1DEJ8_9BACL GTP-binding protein YchF 636 e-180 Q65CP2.1 Q65CP2_BACLD YyaF 574 e-162 C0ZA48.1 C0ZA48_BREBN GTP-dependent nucleic acid-binding protein... 573 e-161 B4AKB5.1 B4AKB5_BACPU GTP-binding protein YchF 564 e-159 >B3K7L8.1 B3K7L8_9BACI GTP-binding protein YchF Length = 366 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/366 (91%), Positives = 354/366 (96%) Query: 1 MALKAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGVVEVPDERLDKLTELVQP 60 MALKAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGVVEVPDERLDKLTELVQP Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGVVEVPDERLDKLTELVQP 60 Query: 61 NKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFVDENVTHVDGKVN 120 NKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCF DEN+THVDGKVN Sbjct: 61 NKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKVN 120 Query: 121 PVSDIQTINLELILADLESLEKRIERSRKNIKGGDKKYVQEVEVLERIKEALYEDKPARS 180 PVSDIQTINLELILADL+S+EKRI+R++KN+KGG+K+Y QEVE+LER+KEALY D+PARS Sbjct: 121 PVSDIQTINLELILADLDSVEKRIDRAKKNMKGGNKQYAQEVELLERLKEALYNDQPARS 180 Query: 181 VELTDDERLIVRDLHLLTLKPVLYAANVGEDEVAAADENPYVQQVREFAIAENAEVVPIS 240 VEL+DDE+LIVRDLHLLTLKPVLYAAN+ ED VA AD NPYVQQVR+FA AENA VVPIS Sbjct: 181 VELSDDEKLIVRDLHLLTLKPVLYAANLSEDGVAEADSNPYVQQVRDFAAAENAIVVPIS 240 Query: 241 AKVEAEIAELEGEDKAMFLEELGLQESGLNRLIKAAYKLLGLYTYFTAGVQEVRAWTIRK 300 AKVEAEIAELEGEDKAMFLEELGL+ESGLNRLIKAAY LLGLYTYFTAGVQEVRAWTIRK Sbjct: 241 AKVEAEIAELEGEDKAMFLEELGLEESGLNRLIKAAYSLLGLYTYFTAGVQEVRAWTIRK 300 Query: 301 GTKAPGAAGVIHTDFERGFIRAEVVAYDDLLAAGSMNGAKERGQLRLEGKEYLVQDGDVM 360 GTKAP AAGVIHTDFERGFIRAEVVAYDDL+AAGSMNGAKERGQLRLEGKEY+V DGDVM Sbjct: 301 GTKAPQAAGVIHTDFERGFIRAEVVAYDDLVAAGSMNGAKERGQLRLEGKEYVVNDGDVM 360 Query: 361 HFRFNV 366 HFRFNV Sbjct: 361 HFRFNV 366 >B1DEJ8.1 B1DEJ8_9BACL GTP-binding protein YchF Length = 370 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 320/366 (87%), Positives = 343/366 (93%) Query: 1 MALKAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGVVEVPDERLDKLTELVQP 60 MALKAG+VGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGVVEVPD RLDKLTELVQP Sbjct: 5 MALKAGVVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGVVEVPDYRLDKLTELVQP 64 Query: 61 NKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFVDENVTHVDGKVN 120 NKTVPTAFEFVDIAGLV GASKGEGLGNKFLAHIREVDAIVHVVRCF DEN+THV+GKV+ Sbjct: 65 NKTVPTAFEFVDIAGLVAGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVNGKVD 124 Query: 121 PVSDIQTINLELILADLESLEKRIERSRKNIKGGDKKYVQEVEVLERIKEALYEDKPARS 180 P+ DIQTINLELILAD+ES+EK+IERSRKN+KGGDKK EVEVLER+KEALY D+PARS Sbjct: 125 PLGDIQTINLELILADIESVEKKIERSRKNLKGGDKKIALEVEVLERVKEALYNDQPARS 184 Query: 181 VELTDDERLIVRDLHLLTLKPVLYAANVGEDEVAAADENPYVQQVREFAIAENAEVVPIS 240 VEL+DDE+L++RDLHLLT+KPVLYAANV E EVA D N +VQ VREFA AE A+VVPIS Sbjct: 185 VELSDDEKLVIRDLHLLTMKPVLYAANVAESEVADTDNNKFVQVVREFAAAEGAQVVPIS 244 Query: 241 AKVEAEIAELEGEDKAMFLEELGLQESGLNRLIKAAYKLLGLYTYFTAGVQEVRAWTIRK 300 AKVE EIAELEGEDKAMFLEELGLQESGLNRLI AAYKLLGLYTYFTAGVQEVRAWTIRK Sbjct: 245 AKVEEEIAELEGEDKAMFLEELGLQESGLNRLINAAYKLLGLYTYFTAGVQEVRAWTIRK 304 Query: 301 GTKAPGAAGVIHTDFERGFIRAEVVAYDDLLAAGSMNGAKERGQLRLEGKEYLVQDGDVM 360 G KAP AAGVIHTDFERGFIRAEVV+++DL AAG+MN AKERGQLRLEGKEY+VQDGDVM Sbjct: 305 GMKAPQAAGVIHTDFERGFIRAEVVSFEDLAAAGTMNVAKERGQLRLEGKEYVVQDGDVM 364 Query: 361 HFRFNV 366 HFRFNV Sbjct: 365 HFRFNV 370 >Q65CP2.1 Q65CP2_BACLD YyaF Length = 366 Score = 574 bits (1479), Expect = e-162, Method: Compositional matrix adjust. Identities = 275/366 (75%), Positives = 319/366 (87%) Query: 1 MALKAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGVVEVPDERLDKLTELVQP 60 MAL AGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVG+VEVPDERL KLTELV P Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIVEVPDERLQKLTELVNP 60 Query: 61 NKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFVDENVTHVDGKVN 120 KTVPTAFEF DIAG+V+GASKGEGLGNKFL+HIR+VDAI HVVRCF D+N+THV GKV+ Sbjct: 61 KKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFADDNITHVSGKVD 120 Query: 121 PVSDIQTINLELILADLESLEKRIERSRKNIKGGDKKYVQEVEVLERIKEALYEDKPARS 180 P+SDI+TINLELILADLE++EKRI R K K DK+ V E E+L ++KEA ++KPARS Sbjct: 121 PISDIETINLELILADLETVEKRIGRVGKMAKQKDKEAVFEFEILTKLKEAFEQEKPARS 180 Query: 181 VELTDDERLIVRDLHLLTLKPVLYAANVGEDEVAAADENPYVQQVREFAIAENAEVVPIS 240 VE +++++ +++ LHLLT KPVLY ANV EDEVA N YVQ+VREFA AENAEV+ + Sbjct: 181 VEFSEEQQKVLKQLHLLTTKPVLYVANVSEDEVADPSGNEYVQKVREFAAAENAEVIVVC 240 Query: 241 AKVEAEIAELEGEDKAMFLEELGLQESGLNRLIKAAYKLLGLYTYFTAGVQEVRAWTIRK 300 AK+E+EIAELEGE+KAMFLEELG++ESGL++LIKA+Y LLGL TYFTAG QEVRAWT +K Sbjct: 241 AKIESEIAELEGEEKAMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRAWTFKK 300 Query: 301 GTKAPGAAGVIHTDFERGFIRAEVVAYDDLLAAGSMNGAKERGQLRLEGKEYLVQDGDVM 360 G KAP AG+IHTDFERGFIRAE VAYDDLL AGSM AKE G++RLEGKEY+V+DGDV+ Sbjct: 301 GMKAPECAGIIHTDFERGFIRAETVAYDDLLEAGSMTAAKEAGKVRLEGKEYIVKDGDVI 360 Query: 361 HFRFNV 366 HFRFNV Sbjct: 361 HFRFNV 366 >C0ZA48.1 C0ZA48_BREBN GTP-dependent nucleic acid-binding protein EngD Length = 366 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 278/366 (75%), Positives = 320/366 (87%) Query: 1 MALKAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGVVEVPDERLDKLTELVQP 60 M GIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVG+VEVPDERL+KLT++V P Sbjct: 1 MGASCGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIVEVPDERLEKLTQIVVP 60 Query: 61 NKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFVDENVTHVDGKVN 120 NK VPTAFEFVDIAGLV+GAS+GEGLGN+FL HIREVDAI HVVRCF DEN+THV G+V+ Sbjct: 61 NKVVPTAFEFVDIAGLVKGASRGEGLGNQFLGHIREVDAIAHVVRCFEDENITHVAGRVD 120 Query: 121 PVSDIQTINLELILADLESLEKRIERSRKNIKGGDKKYVQEVEVLERIKEALYEDKPARS 180 P+SDI+TINLELI ADL+S+++RI+R + +K GDK+ QE++VLE++K A E + ARS Sbjct: 121 PLSDIETINLELIFADLDSVDRRIDRIARKVKSGDKESKQELDVLEKLKAAFEEGQSARS 180 Query: 181 VELTDDERLIVRDLHLLTLKPVLYAANVGEDEVAAADENPYVQQVREFAIAENAEVVPIS 240 VEL D+ER +RDLHLLT+KP+LY NV ED + AD NP+VQ VR+ A +E AEVV IS Sbjct: 181 VELDDEERKWIRDLHLLTIKPMLYVCNVAEDGINDADNNPHVQTVRQHAASEGAEVVVIS 240 Query: 241 AKVEAEIAELEGEDKAMFLEELGLQESGLNRLIKAAYKLLGLYTYFTAGVQEVRAWTIRK 300 AKVEAEIAELEGEDK MFLEELGL ESGL+RLI+AAYKLLGL TYFTAGVQEVRAWTIR+ Sbjct: 241 AKVEAEIAELEGEDKEMFLEELGLTESGLDRLIRAAYKLLGLVTYFTAGVQEVRAWTIRQ 300 Query: 301 GTKAPGAAGVIHTDFERGFIRAEVVAYDDLLAAGSMNGAKERGQLRLEGKEYLVQDGDVM 360 GTKAPGAAGVIHTDFERGFIRAEV+AYD L+ AGS+ A+ERG+ RLEGKEY+V DGDVM Sbjct: 301 GTKAPGAAGVIHTDFERGFIRAEVIAYDHLVDAGSVAVARERGKYRLEGKEYVVADGDVM 360 Query: 361 HFRFNV 366 HFRFNV Sbjct: 361 HFRFNV 366 >B4AKB5.1 B4AKB5_BACPU GTP-binding protein YchF Length = 366 Score = 564 bits (1454), Expect = e-159, Method: Compositional matrix adjust. Identities = 271/366 (74%), Positives = 315/366 (86%) Query: 1 MALKAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGVVEVPDERLDKLTELVQP 60 MAL AGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVG+VEVPDERL KLTELVQP Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIVEVPDERLQKLTELVQP 60 Query: 61 NKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFVDENVTHVDGKVN 120 KTVPTAFEF DIAG+V+GASKGEGLGNKFL+HIR+VDAI HVVR F D+N+THV GKV+ Sbjct: 61 KKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKVD 120 Query: 121 PVSDIQTINLELILADLESLEKRIERSRKNIKGGDKKYVQEVEVLERIKEALYEDKPARS 180 PVSDI+TINLELILADLE++EKR+ R K K DK+ V E ++L ++ A K ARS Sbjct: 121 PVSDIETINLELILADLETVEKRLARVSKLAKQKDKEAVAEFDILSKLMNAFEAGKSARS 180 Query: 181 VELTDDERLIVRDLHLLTLKPVLYAANVGEDEVAAADENPYVQQVREFAIAENAEVVPIS 240 VE TD+++ +V+ LHLLT KPVLY ANV EDEVA D N YVQQ+REFA +ENAEV+ + Sbjct: 181 VEFTDEQQKLVKQLHLLTSKPVLYVANVSEDEVADHDGNEYVQQIREFASSENAEVIVVC 240 Query: 241 AKVEAEIAELEGEDKAMFLEELGLQESGLNRLIKAAYKLLGLYTYFTAGVQEVRAWTIRK 300 AK+E+EIAELEGE+K MFLEELG++ESGL++LI+A+Y LLGL TYFTAG QEVRAWT +K Sbjct: 241 AKIESEIAELEGEEKQMFLEELGIKESGLDQLIQASYSLLGLATYFTAGEQEVRAWTFKK 300 Query: 301 GTKAPGAAGVIHTDFERGFIRAEVVAYDDLLAAGSMNGAKERGQLRLEGKEYLVQDGDVM 360 G KAP AG+IHTDFERGFIRAE VAY+DLLA GSM+ AKE G++RLEGKEY+V+DGDV+ Sbjct: 301 GMKAPECAGIIHTDFERGFIRAETVAYEDLLAGGSMSAAKEAGKVRLEGKEYVVKDGDVI 360 Query: 361 HFRFNV 366 HFRFNV Sbjct: 361 HFRFNV 366 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,119,564,765 Number of extensions: 89349967 Number of successful extensions: 361611 Number of sequences better than 1.0e-05: 3756 Number of HSP's gapped: 356338 Number of HSP's successfully gapped: 3759 Length of query: 366 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 229 Effective length of database: 1,770,017,148 Effective search space: 405333926892 Effective search space used: 405333926892 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)