BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0164.0011.p (377 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7L9.1 B3K7L9_9BACI Isopentenyl-diphosphate delta-isomerase, t... 452 e-125 B1DDV7.1 B1DDV7_9BACL Isopentenyl-diphosphate delta-isomerase, t... 372 e-101 C1PD40.1 C1PD40_BACCO Isopentenyl-diphosphate delta-isomerase, t... 360 1e-97 A6CTG0.1 A6CTG0_9BACI Isopentenyl pyrophosphate isomerase EC=5.3... 336 2e-90 Q8EST0.1 IDI2_OCEIH Isopentenyl-diphosphate delta-isomerase EC=5... 319 2e-85 >B3K7L9.1 B3K7L9_9BACI Isopentenyl-diphosphate delta-isomerase, type 2 EC=5.3.3.2 Length = 370 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 231/345 (66%), Positives = 263/345 (76%), Gaps = 2/345 (0%) Query: 32 LLPSPTTGERKIEHVRLCLNEEVGASGITAGFEHYRFRHNALPELNYDDISLRTVFLGRE 91 L+P TGERKIEHVRLCL+EEVG+ G+T GFE YRFRH ALPE+++ +I L T FL Sbjct: 27 LMPEVPTGERKIEHVRLCLDEEVGSVGVTTGFERYRFRHAALPEIDFGEIKLDTTFLDFS 86 Query: 92 LRTPLLISSMTGGSAATGAINARLAEAAERRGWALGVGSIRAAIERSELAASFRVRDKAP 151 +RTP LISSMTGGS ATG IN RLAEAAERRGWALGVGS+RAA+E+ ELA++FRVR+ AP Sbjct: 87 VRTPFLISSMTGGSKATGEINMRLAEAAERRGWALGVGSVRAAVEKEELASTFRVRESAP 146 Query: 152 GIPVIANIGAVQLSYGFGVEECRRAVEIAGADWLVLHLNGIQEVFQPEGNTGFADLLTRI 211 +PVIAN+GAVQL+YGFG+++C+RAV+IAGAD LVLHLNG+QEVFQPEGNT F LL RI Sbjct: 147 SVPVIANLGAVQLNYGFGLDDCQRAVDIAGADMLVLHLNGLQEVFQPEGNTRFGRLLGRI 206 Query: 212 ERVCRELEIPVGVKEVGWGIDGETAIRLYXXXXXXXXXXXXXXTSWSQVEKFRSSDPVRR 271 E +CR L IPVG+KEVGWGIDGETA L TSWSQVEKFRS DPVRR Sbjct: 207 EDLCRTLSIPVGIKEVGWGIDGETAQTLLDVGAAFIDVAGAGGTSWSQVEKFRSPDPVRR 266 Query: 272 AAAEAFADWGIPTAQCIAEVRAASKHGALIGSGGLRHGVXXXXXXXXXXXXXXFGRNLLG 331 AAAEAFA WG PTA+CIAEVR A+ ALIGSGGL+ GV FGR LLG Sbjct: 267 AAAEAFAGWGNPTAECIAEVREAAPACALIGSGGLQSGVDAAKALALGADLAGFGRGLLG 326 Query: 332 PAVASEETLDQALAQVELELRTAMFGIXXXXPDLAALRGTHRLIR 376 AV S E LDQ LAQVELELRTAMFGI ++ AL+ T RLIR Sbjct: 327 SAVDSVEALDQRLAQVELELRTAMFGIGAG--NIEALKSTRRLIR 369 >B1DDV7.1 B1DDV7_9BACL Isopentenyl-diphosphate delta-isomerase, type 2 EC=5.3.3.2 Length = 356 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/346 (56%), Positives = 239/346 (69%), Gaps = 7/346 (2%) Query: 35 SPTTGERKIEHVRLCLNEEVGASGITAGFEHYRFRHNALPELNYDDISLRTVFLGRELRT 94 S +T +RK EH+R+CL E V GI GF+ +RFRHNALPE+ +DDI L T +LGR +RT Sbjct: 10 SASTSKRKSEHIRICLQENVAGEGIETGFDQFRFRHNALPEIAFDDIRLDTEWLGRRMRT 69 Query: 95 PLLISSMTGGSAATGAINARLAEAAERRGWALGVGSIRAAIERSELAASFRVRDKAPGIP 154 PLL+SSMTGG+ GAIN RLAEAAE RGWA+G+GS+RAAIE+ ELAASF +RD AP +P Sbjct: 70 PLLVSSMTGGTNEAGAINRRLAEAAETRGWAIGLGSMRAAIEQEELAASFYIRDIAPSVP 129 Query: 155 VIANIGAVQLSYGFGVEECRRAVEIAGADWLVLHLNGIQEVFQPEGNTGFADLLTRIERV 214 VIAN+GAVQL+YG+GV+ CR+AVEIA AD LVLHLN +QEVFQPEG+T F LL RI V Sbjct: 130 VIANLGAVQLNYGYGVDACRKAVEIAEADALVLHLNSMQEVFQPEGDTNFRSLLPRIGEV 189 Query: 215 CRELEIPVGVKEVGWGIDGETAIRLYXXXXXXXXXXXXXXTSWSQVEKFRSSDPVRRAAA 274 CR L +PVG+KEVGWGID +TA L TSWSQVEK+R +DP+RR AA Sbjct: 190 CRALSVPVGIKEVGWGIDADTAAALASAGAAFIDVAGAGGTSWSQVEKYRQNDPMRRLAA 249 Query: 275 EAFADWGIPTAQCIAEVRAASKHGALIGSGGLRHGVXXXXXXXXXXXXXXFGRNLL---- 330 EAFA WGIPTA+ + EV++ + +I SGGL+HGV FGR LL Sbjct: 250 EAFAGWGIPTAESVREVKSRLPNTTVIASGGLQHGVDAAKSIALGADIAGFGRALLPRAA 309 Query: 331 -GPAVASEETLDQALAQVELELRTAMFGIXXXXPDLAALRGTHRLI 375 G S E L + ++E ELR AMFGI ++ L+ T RLI Sbjct: 310 NGETRVSVEQLIEQFERIEFELRAAMFGIGAAA--ISDLQHTTRLI 353 >C1PD40.1 C1PD40_BACCO Isopentenyl-diphosphate delta-isomerase, type 2 EC=5.3.3.2 Length = 343 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 178/344 (51%), Positives = 226/344 (65%), Gaps = 2/344 (0%) Query: 33 LPSPTTGERKIEHVRLCLNEEVGASGITAGFEHYRFRHNALPELNYDDISLRTVFLGREL 92 + + +RK EH+R+ L E V T GFE YRF H ALPEL++++IS T FLG+ L Sbjct: 1 MEDSSISKRKAEHIRVVLEENVAGKDTTTGFEKYRFEHQALPELDFEEISTETTFLGKPL 60 Query: 93 RTPLLISSMTGGSAATGAINARLAEAAERRGWALGVGSIRAAIERSELAASFRVRDKAPG 152 + P LISSMTGG+A IN LA+AAE+RGWA +GS RAA+E E A +F+VRD AP Sbjct: 61 KAPFLISSMTGGTAQARTINRNLAQAAEKRGWAFALGSTRAALESPEQAYTFQVRDVAPH 120 Query: 153 IPVIANIGAVQLSYGFGVEECRRAVEIAGADWLVLHLNGIQEVFQPEGNTGFADLLTRIE 212 IPV+AN+GAVQL+YG+G++ECRR VE+ GAD L+LH N +QEVFQ GNT F DLL +IE Sbjct: 121 IPVLANLGAVQLNYGYGIDECRRIVELTGADALILHFNSLQEVFQKGGNTNFKDLLVKIE 180 Query: 213 RVCRELEIPVGVKEVGWGIDGETAIRLYXXXXXXXXXXXXXXTSWSQVEKFRSSDPVRRA 272 +C LE+PVG KEVGWGI+G A +LY TSWSQVEK+ +SDP+++A Sbjct: 181 DLCSRLEVPVGCKEVGWGINGRLAEKLYSVGVSFVDVAGSGGTSWSQVEKYLTSDPLKKA 240 Query: 273 AAEAFADWGIPTAQCIAEVRAASKHGALIGSGGLRHGVXXXXXXXXXXXXXXFGRNLLGP 332 AAEAF+ WG PTA+CI + R G L+ SGGL++GV FGR LL Sbjct: 241 AAEAFSGWGNPTAECITQARNLGLQGTLVASGGLKNGVDAAKAIALGADLAGFGRKLLHD 300 Query: 333 AVASEETLDQALAQVELELRTAMFGIXXXXPDLAALRGTHRLIR 376 AV S + L Q ELEL+ AMFGI DL+AL+ T L + Sbjct: 301 AVHSVDALLSTYEQTELELKIAMFGI--GAKDLSALKQTPLLKK 342 >A6CTG0.1 A6CTG0_9BACI Isopentenyl pyrophosphate isomerase EC=5.3.3.2 Length = 345 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 166/338 (49%), Positives = 220/338 (65%), Gaps = 3/338 (0%) Query: 38 TGERKIEHVRLCLNEEVGASGITAGFEHYRFRHNALPELNYDDISLRTVFLGRELRTPLL 97 T +RK EH+ +CL+++V +T GFE +RF+HNALPE+++ +I L T ++L+ P L Sbjct: 7 TEKRKTEHIDICLSKDVEPVEMTTGFESFRFQHNALPEIDFQEIDLSTRLFDKQLKVPFL 66 Query: 98 ISSMTGGSAATGAINARLAEAAERRGWALGVGSIRAAIERSELAASFRVRDKAPGIPVIA 157 ISSMTGG+ IN LA+ AE+RGWA+GVGS+R AIE+ + A ++ VR AP IP++A Sbjct: 67 ISSMTGGTETAAKINETLAKTAEKRGWAMGVGSMRTAIEKEQTAYTYDVRKHAPTIPILA 126 Query: 158 NIGAVQLSYGFGVEECRRAVEIAGADWLVLHLNGIQEVFQPEGNTGFADLLTRIERVCRE 217 NIGAVQ +YG+GVE+C+RAV++ AD ++LHLN +QEVFQPEG+T F DLL +IE+V R Sbjct: 127 NIGAVQFNYGYGVEQCQRAVDLIKADAIILHLNSMQEVFQPEGDTNFKDLLPKIEKVARS 186 Query: 218 LEIPVGVKEVGWGIDGETAIRLYXXXXXXXXXXXXXXTSWSQVEKFRSSDPVRRAAAEAF 277 L +PVGVKEVG GI TA RLY TSW QVE +RS DP+R AAEAF Sbjct: 187 LPVPVGVKEVGMGISSATARRLYEAGVSFIDVAGAGGTSWIQVEAYRSKDPLRAKAAEAF 246 Query: 278 ADWGIPTAQCIAEVRAASKHGALIGSGGLRHGVXXXXXXXXXXXXXXFGRNLLGPAVASE 337 WGIPTA+ + ++R L SGG+++GV FGR+LL A S+ Sbjct: 247 RGWGIPTAESLLQIRRDVPEVPLFASGGMKNGVHAAKAIALGADIAGFGRSLLPSAAVSD 306 Query: 338 -ETLDQALAQVELELRTAMFGIXXXXPDLAALRGTHRL 374 E LD Q+E ELR AMFGI + L+GT L Sbjct: 307 GEALDGQFQQIEFELRAAMFGIGVY--SIEQLKGTDSL 342 >Q8EST0.1 IDI2_OCEIH Isopentenyl-diphosphate delta-isomerase EC=5.3.3.2 Length = 349 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 158/335 (47%), Positives = 210/335 (62%), Gaps = 2/335 (0%) Query: 40 ERKIEHVRLCLNEEVGASGITAGFEHYRFRHNALPELNYDDISLRTVFLGRELRTPLLIS 99 +RK EH+RLCL V + G E F HNALPE+++ DISL + FLG++L+ P L+S Sbjct: 7 QRKTEHIRLCLTGNVEGVNKSTGLEGINFIHNALPEIDFADISLESSFLGKQLKAPFLVS 66 Query: 100 SMTGGSAATGAINARLAEAAERRGWALGVGSIRAAIERSELAASFRVRDKAPGIPVIANI 159 SMTGGS IN LA AAE +GWAL +GS RA +E + SF +R++AP P+I NI Sbjct: 67 SMTGGSELATKINQNLAIAAEEKGWALAIGSTRAFLESDQHKESFLIRNQAPTAPLIVNI 126 Query: 160 GAVQLSYGFGVEECRRAVEIAGADWLVLHLNGIQEVFQPEGNTGFADLLTRIERVCRELE 219 GAVQL+YG+G EEC+R ++ AD +VLHLN +QE Q G+ F DLL +IE+VC++++ Sbjct: 127 GAVQLNYGYGPEECQRIIDKTNADSIVLHLNSLQEAVQDGGDLNFKDLLPKIEQVCKQVK 186 Query: 220 IPVGVKEVGWGIDGETAIRLYXXXXXXXXXXXXXXTSWSQVEKFRSSDPVRRAAAEAFAD 279 PVGVKEVG+GIDGE A RLY TSWSQVEK RS DP+ +AAAEAF + Sbjct: 187 APVGVKEVGFGIDGEVARRLYDAGISYIDVAGAGGTSWSQVEKLRSKDPLNKAAAEAFNN 246 Query: 280 WGIPTAQCIAEVRAASKHGALIGSGGLRHGVXXXXXXXXXXXXXXFGRNLLGPAVASEET 339 WG PT C+ VR L+ SGG++ GV F R+LL A+ + E Sbjct: 247 WGTPTKDCLVSVRGELPEAPLVASGGMKTGVDAAKAITIGADVVGFARHLLKAAMETPED 306 Query: 340 LDQALAQVELELRTAMFGIXXXXPDLAALRGTHRL 374 + + + Q+ELEL+ MFGI +L L+ T R+ Sbjct: 307 VIRTMEQLELELKMTMFGIGAV--NLEELKNTSRV 339 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,019,151,522 Number of extensions: 77951170 Number of successful extensions: 209233 Number of sequences better than 1.0e-05: 524 Number of HSP's gapped: 208089 Number of HSP's successfully gapped: 524 Length of query: 377 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 240 Effective length of database: 1,770,017,148 Effective search space: 424804115520 Effective search space used: 424804115520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)