BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0164.0006.p (1065 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7M6.1 B3K7M6_9BACI Acriflavin resistance protein 1280 0.0 B7IRW8.1 B7IRW8_BACC2 Transporter, AcrB/AcrD/AcrF family 959 0.0 Q3ER77.1 Q3ER77_BACTI Acriflavin resistance plasma membrane protein 959 0.0 B7HZC0.1 B7HZC0_BACC7 Transporter, AcrB/AcrD/AcrF family 959 0.0 C2SCB1.1 C2SCB1_BACCE Swarming motility protein swrC 959 0.0 >B3K7M6.1 B3K7M6_9BACI Acriflavin resistance protein Length = 1067 Score = 1280 bits (3311), Expect = 0.0, Method: Compositional matrix adjust. Identities = 665/1067 (62%), Positives = 774/1067 (72%), Gaps = 6/1067 (0%) Query: 1 MKSLINFSLRNKFAIWLLTIIIVFAGLYSGLTMKQETLPNISIPYLSITTIYPGAAPEGV 60 MK +INFSLRNKFAIWLLTII+ F GLY GLTMKQET+P+I++P+LS+T IYPGA+PEGV Sbjct: 1 MKGIINFSLRNKFAIWLLTIIVSFGGLYGGLTMKQETIPDINVPFLSVTAIYPGASPEGV 60 Query: 61 VNDVSKPLEQKLRNVDGVKTLTSNSLENASSITIEFDYGTNLDNATAAVREALNEVALPD 120 V DV+KPLE +LRN+DGVKT+TS S+ENA+++ +EFDYG++LDNATAAVREA+NEV LPD Sbjct: 61 VEDVTKPLETRLRNIDGVKTVTSTSMENAANVMVEFDYGSDLDNATAAVREAINEVKLPD 120 Query: 121 NVQKPQISRFXXXXXXXXXXXXXXXXXXXXXXXTRIAENDIRPALEDIEGVASVQIAGQY 180 + QKP IS+F TRI ENDI P LED++GVAS+Q+AGQ+ Sbjct: 121 DAQKPTISKFSMSSMPVVSLSIANKDNMELDELTRITENDIVPELEDLDGVASIQVAGQF 180 Query: 181 VKEVTLKFNQDKLKQYGLTEDTIKGIVQGSSLRVPLGLFTMEESQKAXXXXXXXXXXXXL 240 V EV LKFNQDK+ + GLTEDT+KGIVQGS+L PLG+F ME+SQKA L Sbjct: 181 VNEVQLKFNQDKMSELGLTEDTVKGIVQGSALYAPLGMFEMEKSQKAVAVDGGIIGIDDL 240 Query: 241 KNLSIPVVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTGL- 299 KN++IPV+P G+ Sbjct: 241 KNIAIPVIPGGGGADASAGAGAPNAGAGQQQQPPGDAAGTGQQTVPGAGAGGQNSAPGMP 300 Query: 300 ---PTVKLGELANIEVTGKSESISRTNGKESIGIQIVKANDANTVDVVNGVKDKTDELKK 356 PTVKL E+A IEV G SESISRTNGKESIGIQIVKANDANTVDVVN VKDK +EL+ Sbjct: 301 AGIPTVKLSEIAKIEVIGSSESISRTNGKESIGIQIVKANDANTVDVVNQVKDKAEELRG 360 Query: 357 QYKSMDLTVLLDQGKPIEDSVNTMLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 416 Y MDLT++LDQGKPIEDSV+TMLSK Sbjct: 361 LYPGMDLTIMLDQGKPIEDSVHTMLSKALFGALFAVLIIMVFLRNIRSTIISIISIPLSL 420 Query: 417 XXAVLCLRQMDITLNMMTLGAMTVAIGRVVDDSIVVIENIYRRLSLSGEKLRGRELISAA 476 AVLCL+QMDITLNMM+LGAMTVAIGRVVDDSIVVIENIYRR+SLS EKL+GRELISAA Sbjct: 421 LIAVLCLKQMDITLNMMSLGAMTVAIGRVVDDSIVVIENIYRRMSLSTEKLKGRELISAA 480 Query: 477 TREMFVPIMSSTIVTIAVFLPLAFVSGMVGELFLPFALTMVFALLASLIVAITLVPALAH 536 TREMFVPIMSSTIVTIAVFLPL VSGMVGELF+PFALTMVFALLASL+VAITLVPA+AH Sbjct: 481 TREMFVPIMSSTIVTIAVFLPLTLVSGMVGELFMPFALTMVFALLASLVVAITLVPAMAH 540 Query: 537 SLFRNGLKKGKNSHSEKPGRMAAGYQKILDWSLSHKLITFGVAVLLLVGSLFLIKPIGVS 596 SLFR GLK + H EKPG MA GY+ IL W+L+HK ITF A++LLVGSLFL K +GVS Sbjct: 541 SLFRKGLKN-THDHEEKPGAMARGYRSILKWTLNHKAITFLAAIVLLVGSLFLTKYLGVS 599 Query: 597 FMPSQEEKNVMLTFSPKAGQTLEDVKEQGLKAEKYILAQKHLDKMQYXXXXXXXXXXXXX 656 F+P QE+K M+T+SP+ G LEDV+++ LKAEK IL Q + MQY Sbjct: 600 FIPEQEDKYAMVTYSPEPGVMLEDVEDRALKAEKLILDQPGVQSMQYSIGGSNPLGMGSA 659 Query: 657 XXXLFYVTYDSDTPDFDTVKENLIEGLTKEVPXXXXXXXXXXXXXXXXXXXXXXXIFGDS 716 LFYV YD DT +F+ VK+ LIE L KEVP +FGDS Sbjct: 660 NSGLFYVMYDPDTKNFEDVKKTLIEDLAKEVP-DGTWSNMDMAAGGFGGSQLTVNVFGDS 718 Query: 717 LDQLKPVADEIAGIVQADTGNFKDGKTSLSEAYDQYTIVADQAKLSSLGLTAGQIAMKLS 776 L+Q+KPVAD+IA + DT F++ +TSLSEA++QYT+VADQ KLSSLGLTAGQ+AMKL+ Sbjct: 719 LEQIKPVADQIAELANKDTATFENAETSLSEAFEQYTLVADQEKLSSLGLTAGQLAMKLA 778 Query: 777 PAGTRPVLTEVAMDGKNYNVYIETDKDTYSSIQEMEKATLTSPLGITVPIGEVAKIENGT 836 P RPVLTEV ++ K YNVYIE D TY SI+E+E T+TSPLGI VPI +VAK+E GT Sbjct: 779 PVRERPVLTEVKIEDKTYNVYIEADSKTYKSIKEIENETVTSPLGIEVPIKDVAKVEKGT 838 Query: 837 SPDSITREDGKMKVDVTAEIISSDVNSASNSVKEKIDALDLPDGVTVTFGGVTEQINDTF 896 +PDSITR DGKM V VTA+I+SSDV SAS +++ +++ L+LPDGV+V FGGVTEQIN+TF Sbjct: 839 TPDSITRIDGKMVVSVTADILSSDVGSASTNLEAEVNKLELPDGVSVQFGGVTEQINETF 898 Query: 897 GQLGVAMAAAIAIVYFVLVVTFGGGLAPFAILFSLPFTVIGXXXXXXXXGETLNVSALMG 956 GQLG+AM AAIAIVYFVLVVTFGGGLAPFAILFSLPF VIG GETLNVSALMG Sbjct: 899 GQLGLAMLAAIAIVYFVLVVTFGGGLAPFAILFSLPFIVIGAIIGLLVTGETLNVSALMG 958 Query: 957 ALMLIGIVVTNAIVLIDRVIHKEKEGMSTRQALLEAGATRLRPILMTALATIGALLPLVS 1016 LMLIGIVVTNAIVLIDRVIH E+EGMSTR+ALLEAGATRLRPILMTALATIGALLPLV Sbjct: 959 VLMLIGIVVTNAIVLIDRVIHMEREGMSTREALLEAGATRLRPILMTALATIGALLPLVF 1018 Query: 1017 GLENSAGIISKGLGVTVIGGXXXXXXXXXXXXXXXYEFLMKFRSKKV 1063 G E+SAGIISKGLG+TVIGG YEFLMKF K++ Sbjct: 1019 GWESSAGIISKGLGITVIGGLISSTLLTLVVVPIVYEFLMKFSKKRI 1065 >B7IRW8.1 B7IRW8_BACC2 Transporter, AcrB/AcrD/AcrF family Length = 1038 Score = 959 bits (2480), Expect = 0.0, Method: Compositional matrix adjust. Identities = 522/1037 (50%), Positives = 692/1037 (66%), Gaps = 28/1037 (2%) Query: 1 MKSLINFSLRNKFAIWLLTIIIVFAGLYSGLTMKQETLPNISIPYLSITTIYPGAAPEGV 60 M +INFSL+NKFA+WLLTII+ AG+YSGL MK ET+P+I+ P +++TT+YPGA PE V Sbjct: 1 MNKIINFSLKNKFAVWLLTIIVTIAGIYSGLNMKLETIPDITTPIVTVTTVYPGATPEEV 60 Query: 61 VNDVSKPLEQKLRNVDGVKTLTSNSLENASSITIEFDYGTNLDNATAAVREALNEVALPD 120 + VSKP+E++L+N+ GV ++S+S +NASSI +E+D+ N++ A ++EAL V LPD Sbjct: 61 ADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKEALTNVKLPD 120 Query: 121 NVQKPQISRFXXXXXXXXXXXXXXXXXXXXXXXTRIAENDIRPALEDIEGVASVQIAGQY 180 V+ P++SR T E +I P L+ ++GVASVQIAGQ Sbjct: 121 GVKDPKVSRVNFNAFPVISLSVASKNESLATL-TENVEKNIVPGLKGLDGVASVQIAGQQ 179 Query: 181 VKEVTLKFNQDKLKQYGLTEDTIKGIVQGSSLRVPLGLFTMEESQKAXXXXXXXXXXXXL 240 V EV L F +DK+K+ GL+EDT+K +++GS + +PLGL+T ++++K+ L Sbjct: 180 VDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVDGNITTIKAL 239 Query: 241 KNLSIPVVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTGLP 300 K L IP +P M G+P Sbjct: 240 KELKIPAIPSSPNGQGSQNAGAGAQTPQMNPAA----------------------MNGIP 277 Query: 301 TVKLGELANIEVTGKSESISRTNGKESIGIQIVKANDANTVDVVNGVKDKTDELKKQYKS 360 TV L E+A I+ GK+ESISRTNGKE+IGIQIVKA+DANTVDVVN VKDK +L+K+YK Sbjct: 278 TVTLDEIAEIKEVGKAESISRTNGKEAIGIQIVKASDANTVDVVNAVKDKVKDLEKKYKD 337 Query: 361 MDLTVLLDQGKPIEDSVNTMLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAV 420 +++ DQG PIE SV TMLSK AV Sbjct: 338 LEIISTFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAV 397 Query: 421 LCLRQMDITLNMMTLGAMTVAIGRVVDDSIVVIENIYRRLSLSGEKLRGRELISAATREM 480 L ++QMDITLN+MTLGAMTVAIGRVVDDSIVVIENIYRR+SLS EKLRGR+LI AT+EM Sbjct: 398 LVIKQMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGRDLIREATKEM 457 Query: 481 FVPIMSSTIVTIAVFLPLAFVSGMVGELFLPFALTMVFALLASLIVAITLVPALAHSLFR 540 F+PIMSSTIVTIAVFLPL V GM+GE+FLPFALT+VFALLASL+VA+T+VP LAHSLF+ Sbjct: 458 FIPIMSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFK 517 Query: 541 NGLKKGKN-SHSEKPGRMAAGYQKILDWSLSHKLITFGVAVLLLVGSLFLIKPIGVSFMP 599 + K H EKP ++A GY++IL+W+L+HK+IT +AVLLLVGSL L+ IGVSF+P Sbjct: 518 KESTREKEVHHEEKPSKLANGYKRILEWALNHKIITSSIAVLLLVGSLALVPVIGVSFLP 577 Query: 600 SQEEKNVMLTFSPKAGQTLEDVKEQGLKAEKYILAQKHLDKMQYXXXXXXXXXXXXXXXX 659 S+EEK ++ T+ P+ GQTLEDV++ KAEK+ K + +Q+ Sbjct: 578 SEEEKMIIATYKPEPGQTLEDVEKIATKAEKHFQDNKDVKTIQFSLGGENPMSPGQTNQA 637 Query: 660 LFYVTYDSDTPDFDTVKENLIEGLTKEVPXXXXXXXXXXXXXXXXXXXXXXXIFGDSLDQ 719 +F+V YD+DT +F+ KE +++ L K ++GDS + Sbjct: 638 MFFVQYDNDTKNFEKEKEEVVKDLQKM--SGKGEWKNQDFGASGGSNEIKLYVYGDSSED 695 Query: 720 LKPVADEIAGIVQADTGNFKDGKTSLSEAYDQYTIVADQAKLSSLGLTAGQIAMKLSPAG 779 +KPV +I I++ + + KD +S+++ Y +YT+VADQ KLS +GLTA QI M LS Sbjct: 696 IKPVVKDIQNIMKKNK-DLKDIDSSIAKTYAEYTLVADQEKLSKMGLTAAQIGMGLSNQH 754 Query: 780 TRPVLTEVAMDGKNYNVYIETDKDTYSSIQEMEKATLTSPLGITVPIGEVAKIENGTSPD 839 RPVLT + DGK+ NVY+E +K Y +I ++ +T+PLG V + +V ++ G + + Sbjct: 755 DRPVLTTIKKDGKDINVYVEAEKQNYETIDDLTNRKITTPLGNEVAVKDVMTVKEGETSN 814 Query: 840 SITREDGKMKVDVTAEIISSDVNSASNSVKEKIDALDLPDGVTVTFGGVTEQINDTFGQL 899 ++T DG++ +V+A++ S DV+ AS +V++++D +DLP GV V+ GGVT+ I ++F QL Sbjct: 815 TVTHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDKMDLPSGVDVSMGGVTKDIQESFKQL 874 Query: 900 GVAMAAAIAIVYFVLVVTFGGGLAPFAILFSLPFTVIGXXXXXXXXGETLNVSALMGALM 959 G+AM AAIAIVYFVLVVTFGG LAPFAILFSLPFT+IG GETL+VSA++GALM Sbjct: 875 GLAMLAAIAIVYFVLVVTFGGALAPFAILFSLPFTIIGALVALLISGETLSVSAMIGALM 934 Query: 960 LIGIVVTNAIVLIDRVIHKEKEGMSTRQALLEAGATRLRPILMTALATIGALLPLVSGLE 1019 LIGIVVTNAIVLIDRVIHKE EG+STR+ALLEAGATRLRPILMTA+ATIGAL+PL G E Sbjct: 935 LIGIVVTNAIVLIDRVIHKENEGLSTREALLEAGATRLRPILMTAIATIGALIPLALGFE 994 Query: 1020 NSAGIISKGLGVTVIGG 1036 S G+ISKGLGVTVIGG Sbjct: 995 GS-GLISKGLGVTVIGG 1010 >Q3ER77.1 Q3ER77_BACTI Acriflavin resistance plasma membrane protein Length = 1038 Score = 959 bits (2480), Expect = 0.0, Method: Compositional matrix adjust. Identities = 522/1037 (50%), Positives = 692/1037 (66%), Gaps = 28/1037 (2%) Query: 1 MKSLINFSLRNKFAIWLLTIIIVFAGLYSGLTMKQETLPNISIPYLSITTIYPGAAPEGV 60 M +INFSL+NKFA+WLLTII+ AG+YSGL MK ET+P+I+ P +++TT+YPGA PE V Sbjct: 1 MNKIINFSLKNKFAVWLLTIIVTIAGIYSGLNMKLETIPDITTPIVTVTTVYPGATPEEV 60 Query: 61 VNDVSKPLEQKLRNVDGVKTLTSNSLENASSITIEFDYGTNLDNATAAVREALNEVALPD 120 + VSKP+E++L+N+ GV ++S+S +NASSI +E+D+ N++ A ++EAL V LPD Sbjct: 61 ADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKEALTNVKLPD 120 Query: 121 NVQKPQISRFXXXXXXXXXXXXXXXXXXXXXXXTRIAENDIRPALEDIEGVASVQIAGQY 180 V+ P++SR T E +I P L+ ++GVASVQIAGQ Sbjct: 121 GVKDPKVSRVNFNAFPVISLSVASKNESLATL-TENVEKNIVPGLKGLDGVASVQIAGQQ 179 Query: 181 VKEVTLKFNQDKLKQYGLTEDTIKGIVQGSSLRVPLGLFTMEESQKAXXXXXXXXXXXXL 240 V EV L F +DK+K+ GL+EDT+K +++GS + +PLGL+T ++++K+ L Sbjct: 180 VDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVDGNITTIKAL 239 Query: 241 KNLSIPVVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTGLP 300 K L IP +P M G+P Sbjct: 240 KELKIPAIPSSPNGQGSQNAGAGAQTPQMNPAA----------------------MNGIP 277 Query: 301 TVKLGELANIEVTGKSESISRTNGKESIGIQIVKANDANTVDVVNGVKDKTDELKKQYKS 360 TV L E+A I+ GK+ESISRTNGKE+IGIQIVKA+DANTVDVVN VKDK +L+K+YK Sbjct: 278 TVTLDEIAEIKEVGKAESISRTNGKEAIGIQIVKASDANTVDVVNAVKDKVKDLEKKYKD 337 Query: 361 MDLTVLLDQGKPIEDSVNTMLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAV 420 +++ DQG PIE SV TMLSK AV Sbjct: 338 LEIISTFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAV 397 Query: 421 LCLRQMDITLNMMTLGAMTVAIGRVVDDSIVVIENIYRRLSLSGEKLRGRELISAATREM 480 L ++QMDITLN+MTLGAMTVAIGRVVDDSIVVIENIYRR+SLS EKLRGR+LI AT+EM Sbjct: 398 LVIKQMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGRDLIREATKEM 457 Query: 481 FVPIMSSTIVTIAVFLPLAFVSGMVGELFLPFALTMVFALLASLIVAITLVPALAHSLFR 540 F+PIMSSTIVTIAVFLPL V GM+GE+FLPFALT+VFALLASL+VA+T+VP LAHSLF+ Sbjct: 458 FIPIMSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFK 517 Query: 541 NGLKKGKN-SHSEKPGRMAAGYQKILDWSLSHKLITFGVAVLLLVGSLFLIKPIGVSFMP 599 + K H EKP ++A GY++IL+W+L+HK+IT +AVLLLVGSL L+ IGVSF+P Sbjct: 518 KESTREKEVHHEEKPSKLANGYKRILEWALNHKIITSSIAVLLLVGSLALVPVIGVSFLP 577 Query: 600 SQEEKNVMLTFSPKAGQTLEDVKEQGLKAEKYILAQKHLDKMQYXXXXXXXXXXXXXXXX 659 S+EEK ++ T+ P+ GQTLEDV++ KAEK+ K + +Q+ Sbjct: 578 SEEEKMIIATYKPEPGQTLEDVEKIATKAEKHFQDNKDVKTIQFSLGGENPMSPGQTNQA 637 Query: 660 LFYVTYDSDTPDFDTVKENLIEGLTKEVPXXXXXXXXXXXXXXXXXXXXXXXIFGDSLDQ 719 +F+V YD+DT +F+ KE +++ L K ++GDS + Sbjct: 638 MFFVQYDNDTKNFEKEKEEVVKDLQKM--SGKGEWKNQDFGASGGSNEIKLYVYGDSSED 695 Query: 720 LKPVADEIAGIVQADTGNFKDGKTSLSEAYDQYTIVADQAKLSSLGLTAGQIAMKLSPAG 779 +KPV +I I++ + + KD +S+++ Y +YT+VADQ KLS +GLTA QI M LS Sbjct: 696 IKPVVKDIQNIMKKNK-DLKDIDSSIAKTYAEYTLVADQEKLSKMGLTAAQIGMGLSNQH 754 Query: 780 TRPVLTEVAMDGKNYNVYIETDKDTYSSIQEMEKATLTSPLGITVPIGEVAKIENGTSPD 839 RPVLT + DGK+ NVY+E +K Y +I ++ +T+PLG V + +V ++ G + + Sbjct: 755 DRPVLTTIKKDGKDINVYVEAEKQNYETIDDLTNRKITTPLGNEVAVKDVMTVKEGETSN 814 Query: 840 SITREDGKMKVDVTAEIISSDVNSASNSVKEKIDALDLPDGVTVTFGGVTEQINDTFGQL 899 ++T DG++ +V+A++ S DV+ AS +V++++D +DLP GV V+ GGVT+ I ++F QL Sbjct: 815 TVTHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDKMDLPSGVDVSMGGVTKDIQESFKQL 874 Query: 900 GVAMAAAIAIVYFVLVVTFGGGLAPFAILFSLPFTVIGXXXXXXXXGETLNVSALMGALM 959 G+AM AAIAIVYFVLVVTFGG LAPFAILFSLPFT+IG GETL+VSA++GALM Sbjct: 875 GLAMLAAIAIVYFVLVVTFGGALAPFAILFSLPFTIIGALVALLISGETLSVSAMIGALM 934 Query: 960 LIGIVVTNAIVLIDRVIHKEKEGMSTRQALLEAGATRLRPILMTALATIGALLPLVSGLE 1019 LIGIVVTNAIVLIDRVIHKE EG+STR+ALLEAGATRLRPILMTA+ATIGAL+PL G E Sbjct: 935 LIGIVVTNAIVLIDRVIHKENEGLSTREALLEAGATRLRPILMTAIATIGALIPLALGFE 994 Query: 1020 NSAGIISKGLGVTVIGG 1036 S G+ISKGLGVTVIGG Sbjct: 995 GS-GLISKGLGVTVIGG 1010 >B7HZC0.1 B7HZC0_BACC7 Transporter, AcrB/AcrD/AcrF family Length = 1038 Score = 959 bits (2479), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/1037 (50%), Positives = 694/1037 (66%), Gaps = 28/1037 (2%) Query: 1 MKSLINFSLRNKFAIWLLTIIIVFAGLYSGLTMKQETLPNISIPYLSITTIYPGAAPEGV 60 M +INFSL+NKFA+WLLTII+ AG+YSGL MK ET+P+I+ P +++TT+YPGA PE V Sbjct: 1 MNKIINFSLKNKFAVWLLTIIVTIAGIYSGLNMKLETIPDITTPVVTVTTVYPGATPEEV 60 Query: 61 VNDVSKPLEQKLRNVDGVKTLTSNSLENASSITIEFDYGTNLDNATAAVREALNEVALPD 120 + VSKP+E++L+N+ GV ++S+S +NASSI +E+D+ N++ A ++EAL V LP+ Sbjct: 61 ADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKEALANVKLPE 120 Query: 121 NVQKPQISRFXXXXXXXXXXXXXXXXXXXXXXXTRIAENDIRPALEDIEGVASVQIAGQY 180 V+ P++SR T E ++ P L+ ++GVASVQI+GQ Sbjct: 121 GVKDPKVSRVNFNAFPVISLSVASKNESLATL-TENVEKNVVPGLKGLDGVASVQISGQQ 179 Query: 181 VKEVTLKFNQDKLKQYGLTEDTIKGIVQGSSLRVPLGLFTMEESQKAXXXXXXXXXXXXL 240 V EV L F +DK+K+ GL+EDT+K +++GS + +PLGL+T ++++K+ L Sbjct: 180 VDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVDGNITTMKAL 239 Query: 241 KNLSIPVVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTGLP 300 K L IP VP M G+P Sbjct: 240 KELKIPAVPSSASGQGSQTAGAGAQMPQMNPAA----------------------MNGIP 277 Query: 301 TVKLGELANIEVTGKSESISRTNGKESIGIQIVKANDANTVDVVNGVKDKTDELKKQYKS 360 TV L E+A+I+ GK+ESISRTNGKE+IGIQIVKA DANTVDVVN VKDK EL+K+YK Sbjct: 278 TVTLDEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKD 337 Query: 361 MDLTVLLDQGKPIEDSVNTMLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAV 420 +++ DQG PIE SV TMLSK AV Sbjct: 338 LEIISTFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAV 397 Query: 421 LCLRQMDITLNMMTLGAMTVAIGRVVDDSIVVIENIYRRLSLSGEKLRGRELISAATREM 480 L ++QMDITLN+MTLGAMTVAIGRVVDDSIVVIENIYRR+SLSGEKLRG++LI AT+EM Sbjct: 398 LVIKQMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSGEKLRGKDLIREATKEM 457 Query: 481 FVPIMSSTIVTIAVFLPLAFVSGMVGELFLPFALTMVFALLASLIVAITLVPALAHSLFR 540 F+PIMSSTIVTIAVFLPL V GM+GE+FLPFALT+VFALLASL+VA+T+VP LAHSLF+ Sbjct: 458 FIPIMSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFK 517 Query: 541 N-GLKKGKNSHSEKPGRMAAGYQKILDWSLSHKLITFGVAVLLLVGSLFLIKPIGVSFMP 599 +++ + H EKP ++A GY++IL W+L+HK+IT +AVLLLVGSL L+ IGVSF+P Sbjct: 518 KESMREKEVHHEEKPSKLANGYKRILAWALNHKIITSSIAVLLLVGSLALVPIIGVSFLP 577 Query: 600 SQEEKNVMLTFSPKAGQTLEDVKEQGLKAEKYILAQKHLDKMQYXXXXXXXXXXXXXXXX 659 S+EEK ++ T++P+ GQTLEDV++ KAEK+ K + +Q+ Sbjct: 578 SEEEKMIIATYNPEPGQTLEDVEKIATKAEKHFQDNKDVKTIQFSLGGENPMSPGQSNQA 637 Query: 660 LFYVTYDSDTPDFDTVKENLIEGLTKEVPXXXXXXXXXXXXXXXXXXXXXXXIFGDSLDQ 719 +F+V YD+DT +F+ KE +++ L K ++GDS + Sbjct: 638 MFFVQYDNDTKNFEKEKEQVVKDLQKM--SGKGEWKNQDFGASGGSNEIKLYVYGDSSED 695 Query: 720 LKPVADEIAGIVQADTGNFKDGKTSLSEAYDQYTIVADQAKLSSLGLTAGQIAMKLSPAG 779 +KPV +I I++ + + KD +S+++ Y +YT+VADQ KLS +GLTA QI M LS Sbjct: 696 IKPVVKDIQNIMKKNK-DLKDIDSSIAKTYAEYTLVADQEKLSKMGLTAAQIGMGLSNQH 754 Query: 780 TRPVLTEVAMDGKNYNVYIETDKDTYSSIQEMEKATLTSPLGITVPIGEVAKIENGTSPD 839 RPVLT + DGK+ NVY+E +K Y +I ++ +T+PLG V + +V ++ G + + Sbjct: 755 DRPVLTTIKKDGKDINVYVEAEKQNYETIDDLTNRKITTPLGSEVAVKDVMTVKEGETSN 814 Query: 840 SITREDGKMKVDVTAEIISSDVNSASNSVKEKIDALDLPDGVTVTFGGVTEQINDTFGQL 899 ++ DG++ +V+A++ S DV+ AS +V++++D +DLP GV V+ GGVT+ I ++F QL Sbjct: 815 TVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDKMDLPSGVDVSMGGVTKDIEESFKQL 874 Query: 900 GVAMAAAIAIVYFVLVVTFGGGLAPFAILFSLPFTVIGXXXXXXXXGETLNVSALMGALM 959 G+AM AAIAIVYFVLVVTFGG LAPFAILFSLPFT+IG GETL+VSA++GALM Sbjct: 875 GLAMLAAIAIVYFVLVVTFGGALAPFAILFSLPFTIIGALVALLISGETLSVSAMIGALM 934 Query: 960 LIGIVVTNAIVLIDRVIHKEKEGMSTRQALLEAGATRLRPILMTALATIGALLPLVSGLE 1019 LIGIVVTNAIVLIDRVIHKE EG+STR+ALLEAGATRLRPILMTA+ATIGAL+PL G E Sbjct: 935 LIGIVVTNAIVLIDRVIHKENEGLSTREALLEAGATRLRPILMTAIATIGALIPLALGFE 994 Query: 1020 NSAGIISKGLGVTVIGG 1036 S G+ISKGLGVTVIGG Sbjct: 995 GS-GLISKGLGVTVIGG 1010 >C2SCB1.1 C2SCB1_BACCE Swarming motility protein swrC Length = 1038 Score = 959 bits (2479), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/1037 (50%), Positives = 694/1037 (66%), Gaps = 28/1037 (2%) Query: 1 MKSLINFSLRNKFAIWLLTIIIVFAGLYSGLTMKQETLPNISIPYLSITTIYPGAAPEGV 60 M +INFSL+NKFA+WLLTII+ AG+YSGL MK ET+P+I+ P +++TT+YPGA PE V Sbjct: 1 MNKIINFSLKNKFAVWLLTIIVTIAGIYSGLNMKLETIPDITTPVVTVTTVYPGATPEEV 60 Query: 61 VNDVSKPLEQKLRNVDGVKTLTSNSLENASSITIEFDYGTNLDNATAAVREALNEVALPD 120 + VSKP+E++L+N+ GV ++S+S +NASSI +E+D+ N++ A ++EAL V LP+ Sbjct: 61 ADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKEALANVKLPE 120 Query: 121 NVQKPQISRFXXXXXXXXXXXXXXXXXXXXXXXTRIAENDIRPALEDIEGVASVQIAGQY 180 V+ P++SR T E ++ P L+ ++GVASVQI+GQ Sbjct: 121 GVKDPKVSRVNFNAFPVISLSVASKNESLATL-TENVEKNVVPGLKGLDGVASVQISGQQ 179 Query: 181 VKEVTLKFNQDKLKQYGLTEDTIKGIVQGSSLRVPLGLFTMEESQKAXXXXXXXXXXXXL 240 V EV L F +DK+K+ GL+EDT+K +++GS + +PLGL+T ++++K+ L Sbjct: 180 VDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVDGNITTMKAL 239 Query: 241 KNLSIPVVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTGLP 300 K L IP VP M G+P Sbjct: 240 KELKIPAVPSSASGQGSQTAGAGAQMPQMNPAA----------------------MNGIP 277 Query: 301 TVKLGELANIEVTGKSESISRTNGKESIGIQIVKANDANTVDVVNGVKDKTDELKKQYKS 360 TV L E+A+I+ GK+ESISRTNGKE+IGIQIVKA DANTVDVVN VKDK EL+K+YK Sbjct: 278 TVTLDEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKD 337 Query: 361 MDLTVLLDQGKPIEDSVNTMLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAV 420 +++ DQG PIE SV TMLSK AV Sbjct: 338 LEIISTFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAV 397 Query: 421 LCLRQMDITLNMMTLGAMTVAIGRVVDDSIVVIENIYRRLSLSGEKLRGRELISAATREM 480 L ++QMDITLN+MTLGAMTVAIGRVVDDSIVVIENIYRR+SLSGEKLRG++LI AT+EM Sbjct: 398 LVIKQMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSGEKLRGKDLIREATKEM 457 Query: 481 FVPIMSSTIVTIAVFLPLAFVSGMVGELFLPFALTMVFALLASLIVAITLVPALAHSLFR 540 F+PIMSSTIVTIAVFLPL V GM+GE+FLPFALT+VFALLASL+VA+T+VP LAHSLF+ Sbjct: 458 FIPIMSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFK 517 Query: 541 N-GLKKGKNSHSEKPGRMAAGYQKILDWSLSHKLITFGVAVLLLVGSLFLIKPIGVSFMP 599 +++ + H EKP ++A GY++IL W+L+HK+IT +AVLLLVGSL L+ IGVSF+P Sbjct: 518 KESMREKEVHHEEKPSKLANGYKRILAWALNHKIITSSIAVLLLVGSLALVPIIGVSFLP 577 Query: 600 SQEEKNVMLTFSPKAGQTLEDVKEQGLKAEKYILAQKHLDKMQYXXXXXXXXXXXXXXXX 659 S+EEK ++ T++P+ GQTLEDV++ KAEK+ K + +Q+ Sbjct: 578 SEEEKMIIATYNPEPGQTLEDVEKIATKAEKHFQDNKDVKTIQFSLGGENPMSPGQSNQA 637 Query: 660 LFYVTYDSDTPDFDTVKENLIEGLTKEVPXXXXXXXXXXXXXXXXXXXXXXXIFGDSLDQ 719 +F+V YD+DT +F+ KE +++ L K ++GDS + Sbjct: 638 MFFVQYDNDTKNFEKEKEQVVKDLQKM--SGKGEWKNQDFGASGGSNEIKLYVYGDSSED 695 Query: 720 LKPVADEIAGIVQADTGNFKDGKTSLSEAYDQYTIVADQAKLSSLGLTAGQIAMKLSPAG 779 +KPV +I I++ + + KD +S+++ Y +YT+VADQ KLS +GLTA QI M LS Sbjct: 696 IKPVVKDIQNIMKKNK-DLKDIDSSIAKTYAEYTLVADQEKLSKMGLTAAQIGMGLSNQH 754 Query: 780 TRPVLTEVAMDGKNYNVYIETDKDTYSSIQEMEKATLTSPLGITVPIGEVAKIENGTSPD 839 RPVLT + DGK+ NVY+E +K Y +I ++ +T+PLG V + +V ++ G + + Sbjct: 755 DRPVLTTIKKDGKDINVYVEAEKQNYETIDDLTNRKITTPLGSEVAVKDVMTVKEGETSN 814 Query: 840 SITREDGKMKVDVTAEIISSDVNSASNSVKEKIDALDLPDGVTVTFGGVTEQINDTFGQL 899 ++ DG++ +V+A++ S DV+ AS +V++++D +DLP GV V+ GGVT+ I ++F QL Sbjct: 815 TVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDKMDLPSGVDVSMGGVTKDIEESFKQL 874 Query: 900 GVAMAAAIAIVYFVLVVTFGGGLAPFAILFSLPFTVIGXXXXXXXXGETLNVSALMGALM 959 G+AM AAIAIVYFVLVVTFGG LAPFAILFSLPFT+IG GETL+VSA++GALM Sbjct: 875 GLAMLAAIAIVYFVLVVTFGGALAPFAILFSLPFTIIGALVALLISGETLSVSAMIGALM 934 Query: 960 LIGIVVTNAIVLIDRVIHKEKEGMSTRQALLEAGATRLRPILMTALATIGALLPLVSGLE 1019 LIGIVVTNAIVLIDRVIHKE EG+STR+ALLEAGATRLRPILMTA+ATIGAL+PL G E Sbjct: 935 LIGIVVTNAIVLIDRVIHKENEGLSTREALLEAGATRLRPILMTAIATIGALIPLALGFE 994 Query: 1020 NSAGIISKGLGVTVIGG 1036 S G+ISKGLGVTVIGG Sbjct: 995 GS-GLISKGLGVTVIGG 1010 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,748,707,936 Number of extensions: 175921202 Number of successful extensions: 736565 Number of sequences better than 1.0e-05: 7130 Number of HSP's gapped: 714105 Number of HSP's successfully gapped: 19398 Length of query: 1065 Length of database: 3,060,696,203 Length adjustment: 146 Effective length of query: 919 Effective length of database: 1,685,228,013 Effective search space: 1548724543947 Effective search space used: 1548724543947 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 137 (57.4 bits)