BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0164.0005.p
         (221 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7M7.1 B3K7M7_9BACI Putative uncharacterized protein                208   3e-52
C4CA42.1 C4CA42_9ACTN Uncharacterized component of anaerobic deh...    59   3e-07
Q24WN0.1 Q24WN0_DESHY Putative uncharacterized protein                 58   6e-07
Q24RZ2.1 Q24RZ2_DESHY Uncharacterized component of anaerobic deh...    58   7e-07
B8FWS4.1 B8FWS4_DESHD Cytoplasmic chaperone TorD family protein        58   7e-07

>B3K7M7.1 B3K7M7_9BACI Putative uncharacterized protein
          Length = 225

 Score =  208 bits (529), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 102/215 (47%), Positives = 136/215 (63%), Gaps = 4/215 (1%)

Query: 1   VPEAFSRWLESRGLIYQLLVDFYGRKPSLSLVAQWIRNRQLGVAAEMTEGGRELKRYLCS 60
           VP+   RWLE+RG +Y+LL+DF G  PSLS++A+W R   +  AAE ++ G EL +YLC 
Sbjct: 11  VPDVCHRWLENRGTVYELLIDFLGNWPSLSMIAEWSRGSGISKAAECSKAGTELMKYLCG 70

Query: 61  QEPSALPQICERETHEYMRLMNERAASTIVXXXXXXXXXXXXFCNVLSDVYASAGIVFKK 120
           + P  L +ICE E  EY RL+                         L++ YASAG+ F K
Sbjct: 71  RSPEELVRICEYEGAEYRRLLQLSKPRQAAESHYTKDGCAQD----LAECYASAGVAFNK 126

Query: 121 CGGEADDHISIELEFMAVMHERMLYNSFSIRSAMELLEIQERFLEEHLLRWTPQFCERLN 180
             GEADDHI+IELEFM ++H+RML N++   S ++L+E+QE+FLEEHLL W P  C+ L 
Sbjct: 127 LHGEADDHIAIELEFMTLLHDRMLNNTYCEDSMLQLMEVQEKFLEEHLLSWVPSLCKDLK 186

Query: 181 AATDSPLYLGLSHMLEEFLPQDLQMLRAWKTSLES 215
            +T SPLY  L  +LEEFL QDL ML+ WK S E+
Sbjct: 187 GSTQSPLYQSLFSLLEEFLAQDLNMLKTWKHSKEA 221


>C4CA42.1 C4CA42_9ACTN Uncharacterized component of anaerobic dehydrogenase
          Length = 239

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 2/107 (1%)

Query: 110 VYASAGIVFKKCGGEADDHISIELEFMAVMHERML--YNSFSIRSAMELLEIQERFLEEH 167
           +Y + G+   +   E +DHI++ELEFM V+ ER+     S +  +A +L+  Q  FL++H
Sbjct: 130 IYRAYGLSKDESWREGEDHIALELEFMKVLSERIAAALESGNEDTAYDLMVAQLNFLQDH 189

Query: 168 LLRWTPQFCERLNAATDSPLYLGLSHMLEEFLPQDLQMLRAWKTSLE 214
           LL W P     +     +  YL LS++ + FL  D + L    T +E
Sbjct: 190 LLSWAPLLTVDMRRFAKTDFYLALSYLTDGFLETDKEYLLDMLTEVE 236


>Q24WN0.1 Q24WN0_DESHY Putative uncharacterized protein
          Length = 193

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 2/100 (2%)

Query: 109 DVYASAGIVFKKCGGEADDHISIELEFMAVMHERMLY--NSFSIRSAMELLEIQERFLEE 166
           + Y   G+ +     E +DH S+ELEFMA +  R  Y   +  ++ A+ L + Q+RFLEE
Sbjct: 89  EFYGRHGLAYVLKHKEPEDHYSVELEFMAELIRRQSYYLRTGIVKEALYLFKEQQRFLEE 148

Query: 167 HLLRWTPQFCERLNAATDSPLYLGLSHMLEEFLPQDLQML 206
           HLL+W+  F   +     +  + G++ +  EFL  D  +L
Sbjct: 149 HLLKWSLDFTLSVIQNAHTEYFQGMALLAHEFLMWDYDLL 188


>Q24RZ2.1 Q24RZ2_DESHY Uncharacterized component of anaerobic dehydrogenase
          Length = 233

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 124 EADDHISIELEFM--AVMHERMLYNSFSIRSAMELLEIQERFLEEHLLRWTPQFCERLNA 181
           EADDH+ +EL+FM    +  R   N  +I    ++   Q+ FLE HLL+W P+   ++  
Sbjct: 137 EADDHLGLELDFMYQLTLQARQAMNEGNIEKLQQIFTDQKDFLENHLLQWVPELALKIRE 196

Query: 182 ATDSPLYLGLSHMLEEFLPQDLQML 206
              S  Y G++ +L+ FL  DL+ L
Sbjct: 197 NAQSSFYPGIAKILKGFLTLDLEAL 221


>B8FWS4.1 B8FWS4_DESHD Cytoplasmic chaperone TorD family protein
          Length = 233

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 124 EADDHISIELEFM--AVMHERMLYNSFSIRSAMELLEIQERFLEEHLLRWTPQFCERLNA 181
           EADDH+ +EL+FM    +  R   N  +I    ++   Q+ FLE HLL+W P+   ++  
Sbjct: 137 EADDHLGLELDFMYQLTLQARQAMNEGNIEKLQQIFTDQKDFLENHLLQWVPELALKIRE 196

Query: 182 ATDSPLYLGLSHMLEEFLPQDLQML 206
              S  Y G++ +L+ FL  DL+ L
Sbjct: 197 NAQSSFYPGIAKILKGFLTLDLEAL 221


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,177,131,017
Number of extensions: 41468242
Number of successful extensions: 88095
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 88185
Number of HSP's successfully gapped: 19
Length of query: 221
Length of database: 3,060,696,203
Length adjustment: 131
Effective length of query: 90
Effective length of database: 1,826,543,238
Effective search space: 164388891420
Effective search space used: 164388891420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)