BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0164.0003.p (438 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAJ8.1 B3KAJ8_9BACI Helix-turn-helix domain protein 350 2e-94 B3KIV3.1 B3KIV3_9BACI Putative uncharacterized protein 305 6e-81 C0Z8G0.1 C0Z8G0_BREBN Putative DNA-binding protein 208 7e-52 C0Z8G2.1 C0Z8G2_BREBN Putative DNA-binding protein 207 2e-51 C0ZDR6.1 C0ZDR6_BREBN Putative uncharacterized protein 201 1e-49 >B3KAJ8.1 B3KAJ8_9BACI Helix-turn-helix domain protein Length = 467 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 179/431 (41%), Positives = 263/431 (61%), Gaps = 4/431 (0%) Query: 3 LEHTVTIRDELWAYLAQEELSINRFAALSGIHSGTLSRIMKGRQAMAMSHLERITQTMGL 62 L TI EL YL +E LSI+ FA S I+SGTLSR +KG+Q +++S+L+ +T+ M L Sbjct: 2 LPTDTTISTELLRYLKKENLSISSFANKSRINSGTLSRFIKGQQPLSVSNLDLVTEAMNL 61 Query: 63 AEDYFYSKYVNECLYDSAPTWRRLRPFILRSAQLERLDCIEQLVHGLLDNLVYAPLLFDL 122 E YFYS Y EC+ S+P WRRL PFI+R A+L +L C++QLV ++DNL Y+ LLFD Sbjct: 62 EEGYFYSFYAYECMIQSSPNWRRLGPFIMRCAELNKLKCLDQLVGMMMDNLTYSSLLFDT 121 Query: 123 AEELFQQDKHQAAAIIYENVAASEKYQHSERLALCQYRLFMISLGDDPQQNLIEATLFEN 182 AE L+ + +AA IIY+ VA SEKYQH+ERL +CQYR+F SL D + NL FEN Sbjct: 122 AEALYHKGNREAALIIYKKVAESEKYQHAERLGMCQYRIFTCSLNSDQEHNLDCTIQFEN 181 Query: 183 YVNRLDEAHQLDAIKKLVHVYYSLHHWEKAEELTQELHRLASIQYNLRSRANHKHNNTTA 242 YV RL +A QLDA+K L + SL W KA+ QE+ R++ + Y+ + + + Sbjct: 182 YVKRLPDAVQLDALKDLANTLLSLRKWNKAKYYIQEMGRISRVLYSQKHKQARPSSRLKR 241 Query: 243 LERPLYFYILYAQLMRSCTYEERGDYKTALEIVPLYTDGSWIQEEGEEVNRIVAQFKEWG 302 +PL+ YILY+ L+ E DY AL V Y D SW++E E QF+EW Sbjct: 242 PAKPLFGYILYSDLLLGSIAAENDDYDQALYYVSCYEDQSWVKESDEAAEITKEQFREWA 301 Query: 303 TANTYLNRLMDGQKEVLDEYVDFVSKRENEIFTALYKIVETANRYHWDVDHILKRFSSYI 362 N YL LM G +VL+ Y+D++S RENEI AL+KI++ AN YH+++D L +F I Sbjct: 302 KGNRYLYELMKGNTDVLEPYIDYLSSRENEILKALFKIIQAANMYHFEIDQYLDKFEKLI 361 Query: 363 -PYRRYSGIFTKRDKHVTDDHHARFRSELATYYLARRRF--GAKEIAMRSVDLSAEVDHD 419 + + G +++ DD A F ++L YY+ + G+K I + S+++S +++ Sbjct: 362 LNHLKRGGGVGSYTEYIIDDRFANFLTDLGKYYIWKDNIQKGSKYI-LESLEISYKINST 420 Query: 420 RNVIKGTISVD 430 N+++ +++ Sbjct: 421 ANIVRCCTTIE 431 >B3KIV3.1 B3KIV3_9BACI Putative uncharacterized protein Length = 414 Score = 305 bits (781), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 162/378 (42%), Positives = 231/378 (61%), Gaps = 4/378 (1%) Query: 48 MAMSHLERITQTMGLAEDYFYSKYVNECLYDSAPTWRRLRPFILRSAQLERLDCIEQLVH 107 M+M L+RIT+ MGL E +FY+ Y+ E ++ + P WRRLRPF+ R A+L++LDC+ + Sbjct: 1 MSMHQLDRITEGMGLEEGHFYNLYITESIFHTTPDWRRLRPFLKRCAELDKLDCLHRTAR 60 Query: 108 GLLDNLVYAPLLFDLAEELFQQDKHQAAAIIYENVAASEKYQHSERLALCQYRLFMISLG 167 L+N+ Y P+LF++AEELF ++K++AAA++YE VA EK Q+SERLALCQYRLF+I LG Sbjct: 61 MTLENINYVPMLFEMAEELFIEEKYKAAALLYECVAECEKLQYSERLALCQYRLFLIRLG 120 Query: 168 DDPQQNLIEATLFENYVNRLDEAHQLDAIKKLVHVYYSLHHWEKAEELTQELHRLASIQY 227 ++ ++NL A FE Y++RLDE +QLDA KL+++ SL +K E L + + A I Y Sbjct: 121 ENQEENLQAAVYFEPYIDRLDEMYQLDAYVKLINLNISLQRMDKIEALAKRMEHHARIHY 180 Query: 228 NLRSRANHKHNNTTALERPLYFYILYAQLMRSCTYEERGDYKTALEIVPLYTDGSWIQEE 287 N +PL FYILY+ L+++ Y+ERGDY A V LY WI Sbjct: 181 QQNRSWFEGSGNP---RKPLIFYILYSYLIQAYLYQERGDYDNAFYYVSLYEKPDWITNA 237 Query: 288 GEEVNRIVAQFKEWGTANTYLNRLMDGQKEVLDEYVDFVSKRENEIFTALYKIVETANRY 347 E + I+ QFKEW AN Y+ LM GQ L +YVD+V RE+EIF AL I+ ANRY Sbjct: 238 SNEESLIMNQFKEWAEANRYMFSLMSGQPGALHQYVDYVESREHEIFLALCNIMVAANRY 297 Query: 348 HWDVDHILKRFSSYIPYRRYSGIFTKRDKHVTDDHHARFRSELATYYL-ARRRFGAKEIA 406 VD IL RF ++ YR K VT + + R +EL YYL A+++ Sbjct: 298 QLHVDPILDRFKEHLHYRSQQNELGKISDQVTINRYTRLLAELGIYYLNAKQQNRGLSYI 357 Query: 407 MRSVDLSAEVDHDRNVIK 424 + S++ S + D +++ Sbjct: 358 LDSLEYSIRIKSDNGMLR 375 >C0Z8G0.1 C0Z8G0_BREBN Putative DNA-binding protein Length = 443 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 126/382 (32%), Positives = 201/382 (52%), Gaps = 11/382 (2%) Query: 23 SINRFAALSGIHSGTLSRIMKGR--QAMAMSHLERITQTMGLAEDYFYSKYVNECLYDSA 80 ++++ + L+GI+ G+LS I+ G +AM + L+ + G + + Y Y ECL + Sbjct: 19 TLSKLSELTGINPGSLSEILNGNPPRAMTIGQLDAFAKVFGREQGWLYELYPEECLSEQR 78 Query: 81 PTWRRLRPFILRSAQLERLDCIEQLVHGLLDNLVYAPLLFDLAEELFQQDKHQAAAIIYE 140 + RL P++ R ++ R DCIE +V LL+N +LF LAE+L+++ + + + YE Sbjct: 79 ISRPRLIPYLARCVEVGRKDCIETVVSILLENPKNILILFALAEQLYEKGQLKESVPFYE 138 Query: 141 NVAASEKYQHSERLALCQYRLFMISLGDDPQQNLIEATLFENYVNRLDEAHQLDAIKKLV 200 V +EK +S+ + QYRLF LG + ++N F Y NRL E +QLDA+ +L Sbjct: 139 YVIENEKDSYSDHFVMSQYRLFRAVLGTNAEENWENVIRFSPYRNRLPENYQLDALFQLA 198 Query: 201 HVYYSLHHWEKAEELTQELHRLASI--QYNLRSRANHKHNNTTALERPLYFYILYAQLMR 258 V ++L W K+ E EL LA + L +K ERPL +Y L + Sbjct: 199 RVCFALQKWNKSGEYGDELRLLAETVHMHELDRLKRNKKGEPLKPERPLVYYYGMGHLYK 258 Query: 259 SCTYEERGDYKTALEIVPLYTDGSWIQEEGEEVNRIVAQFKEWGTANTYLNRLMDGQKEV 318 E +G Y+ A + V +Y D W + E+ + V +FK W AN+Y ++ G +V Sbjct: 259 GAALEMQGLYEEAKQYVRVYADLGWFELLDEDGRKEVERFKVWAKANSYTLEVLSGNTDV 318 Query: 319 LDEYVDFV-SKRENEIFTALYKIVETANRYHWDVDHILKRFSSYIPYRRYSGIFTKRDKH 377 L+EYVD++ S NE+ + I+++AN YH+ VD IL RFSS I F + + Sbjct: 319 LEEYVDYLESLPTNELLAGMISIMKSANTYHFCVDEILDRFSSQI------ASFDQFTEA 372 Query: 378 VTDDHHARFRSELATYYLARRR 399 + D H +FR + A Y + R Sbjct: 373 IGLDRHLQFRYQTAIYEFGKGR 394 >C0Z8G2.1 C0Z8G2_BREBN Putative DNA-binding protein Length = 456 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/414 (31%), Positives = 224/414 (54%), Gaps = 16/414 (3%) Query: 8 TIRDELWAYLAQEELSINRFAALSGIHSGTLSRIMKGR--QAMAMSHLERITQTMGLAED 65 ++R E+ + + ++++ L+GI+ G+LS I+ G +AM + L+ + G Sbjct: 11 SLRSEIERHRRECGYTLSKLGELTGINHGSLSEILNGNPPRAMTIGQLDALAAVFGREPG 70 Query: 66 YFYSKYVNECLYDSAPTWRRLRPFILRSAQLERLDCIEQLVHGLLDNLVYAPLLFDLAEE 125 + Y Y EC+ + + RL P+++R A++ R DCI+++V LL+N LF +AE+ Sbjct: 71 WLYELYTEECITEGRISRPRLIPYLIRCAEVGRQDCIDEVVPKLLENPKNISTLFAVAEQ 130 Query: 126 LFQQDKHQAAAIIYENVAASEKYQHSERLALCQYRLFMISL-GDDPQQNLIEATLFENYV 184 L+++ K + + YE V +EK +S + + QYRLF + + G + ++N F+ Y Sbjct: 131 LYEEGKQKQSVPFYEYVIENEKDSYSNQFVMSQYRLFRVVVQGTNSEENWKAVIRFDPYR 190 Query: 185 NRLDEAHQLDAIKKLVHVYYSLHHWEKAEELTQELHRLASIQYN--LRSRANHKHNNTTA 242 RL E +QLDA+ +L +V Y++H W + ++ EL LA+I Y LR R ++K + + Sbjct: 191 RRLPENNQLDALLQLANVCYTIHKWREMDKYADELRELATIIYEDELRRRRSNKASEMLS 250 Query: 243 LERPLYFYILYAQLMRSCTYEERGDYKTALEIVPLYTDGSWIQEEGEEVNRI-VAQFKEW 301 ER L Y A L++S E++ Y+ A V Y D SW E +E+ +I V +F+ W Sbjct: 251 TERHLVVYYGQAFLIKSIALEKQELYEEAKRYVDGYADLSWF-EFLDEIGQIEVQKFRSW 309 Query: 302 GTANTYLNRLMDGQKEVLDEYVDFVSKRENEIFTALYKIVETANRYHWDVDHILKRFSSY 361 TAN Y ++ G +V+ +Y+ F+S E+ + L IV AN+Y + +D I ++F+ + Sbjct: 310 ATANLYTLNILMGNSDVIPDYIHFLSDHPKEVLSGLVTIVSAANQYGFSIDSIFEQFAEH 369 Query: 362 IPYRRYSGIFTKRDKHVTDDHHARFRSELATYYLARRRF--GAKEIAMRSVDLS 413 I F R + H +FR+E+A Y R ++ G E +R + LS Sbjct: 370 IDR------FEDRQDAIGMSEHMQFRNEMAIYLFKRGKYAEGLNE-TLRCLSLS 416 >C0ZDR6.1 C0ZDR6_BREBN Putative uncharacterized protein Length = 455 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/397 (30%), Positives = 199/397 (50%), Gaps = 11/397 (2%) Query: 8 TIRDELWAYLAQEELSINRFAALSGIHSGTLSRIMK--GRQAMAMSHLERITQTMGLAED 65 ++R E+ +L + ++ + ++GI+ G LS I +AM + HL+ + A Sbjct: 10 SLRSEVEHHLKERGYTLTKLGEITGINQGVLSDIFNRTPSRAMTIGHLDALAVAFNQAPG 69 Query: 66 YFYSKYVNECLYDSAPTWRRLRPFILRSAQLERLDCIEQLVHGLLDNLVYAPLLFDLAEE 125 + Y YV EC+ + + R+ P+++R A++ R DCIE +V LLDN +LF +AE+ Sbjct: 70 WLYDLYVTECIVEGKVSRSRVVPYLVRCAEIGRQDCIELIVPILLDNQKNLSILFSVAEK 129 Query: 126 LFQQDKHQAAAIIYENVAASEKYQHSERLALCQYRLF-MISLGDDPQQNLIEATLFENYV 184 LF K Q + Y+ V SEK H +R + QYRLF + G D ++ F Y Sbjct: 130 LFTNGKRQESIPFYQLVIESEKDSHCDRFVMSQYRLFRAVQGGADSEKKWKAVICFHPYR 189 Query: 185 NRLDEAHQLDAIKKLVHVYYSLHHWEKAEELTQELHRLASIQYNLRSRANHKHNNTTALE 244 NRL E +QLDA+ +L +V ++LH+W++ E EL LA++ YN + LE Sbjct: 190 NRLPENYQLDALLQLANVCFTLHNWKEVERYADELKELATVIYNEEIQRWEIDGVRGILE 249 Query: 245 RPLYFYILYAQ--LMRSCTYEERGDYKTALEIVPLYTDGSWIQEEGEEVNRIVAQFKEWG 302 + + Y Q L++ + + Y+ A+ V Y + W + + + +F+ W Sbjct: 250 TECHLVVYYGQGFLLKGLALQLQERYEEAISYVQAYAELGWFEFRDDLAEMEIEKFRGWA 309 Query: 303 TANTYLNRLMDGQKEVLDEYVDFVSKRENEIFTALYKIVETANRYHWDVDHILKRFSSYI 362 AN Y L+ G+ E+L EYV+ ++ EI ++ I+ETANR+ VD I++RFS I Sbjct: 310 KANNYTLNLLMGRTELLSEYVNHLANNPPEILAGMFTIMETANRFGLSVDDIVERFSKEI 369 Query: 363 PYRRYSGIFTKRDKHVTDDHHARFRSELATYYLARRR 399 F + H FR LA Y L + R Sbjct: 370 ------ACFQDYKDPFSLTRHLHFRYHLAIYQLDKGR 400 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,445,243,063 Number of extensions: 97171696 Number of successful extensions: 254530 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 254512 Number of HSP's successfully gapped: 11 Length of query: 438 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 299 Effective length of database: 1,751,175,118 Effective search space: 523601360282 Effective search space used: 523601360282 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)