BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0164.0001.p (215 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7L2.1 B3K7L2_9BACI Sua5/YciO/YrdC/YwlC family protein 231 3e-59 B1DEJ1.1 B1DEJ1_9BACL Sua5/YciO/YrdC/YwlC family protein 226 8e-58 C1P8R2.1 C1P8R2_BACCO Sua5/YciO/YrdC/YwlC family protein 222 2e-56 B7HFM3.1 B7HFM3_BACC4 Sua5/yciO/yrdC/ywlC family protein 215 2e-54 Q814U4.1 Q814U4_BACCR SUA5 protein 213 8e-54 >B3K7L2.1 B3K7L2_9BACI Sua5/YciO/YrdC/YwlC family protein Length = 392 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 115/160 (71%), Positives = 135/160 (84%) Query: 49 RQAIAEAAALLREGSTVAFPTETVYGLGADARSTAAVEAVFAAKGRPSDNPLIVHIARRS 108 +QA+ EA +L +G TVAFPTETVYGLGADA +T AVE +FAAKGRPSDNPLIVHI+ + Sbjct: 47 KQALHEAGQVLAQGGTVAFPTETVYGLGADAGNTEAVERIFAAKGRPSDNPLIVHISELA 106 Query: 109 DLDRLVTEVHPSAAALIGAFWPGPLTVVLPVRPGVLSPLVTAGLDTVGVRMPDHPLALAL 168 LD LV +V+ + AL+ +FWPGPL++VLPV+PG +SP VTAGLDTV VRMPDH +ALAL Sbjct: 107 QLDGLVQQVNETERALMASFWPGPLSLVLPVKPGAVSPRVTAGLDTVAVRMPDHRVALAL 166 Query: 169 IRAADCPVAAPSANRSGRPSPTLAAHVLEDLAGYIGGVLD 208 I AA CP+AAPSANRSGRPSPTLA+HVLEDLAG I GVLD Sbjct: 167 ISAAGCPLAAPSANRSGRPSPTLASHVLEDLAGAIDGVLD 206 >B1DEJ1.1 B1DEJ1_9BACL Sua5/YciO/YrdC/YwlC family protein Length = 356 Score = 226 bits (577), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 114/157 (72%), Positives = 127/157 (80%) Query: 52 IAEAAALLREGSTVAFPTETVYGLGADARSTAAVEAVFAAKGRPSDNPLIVHIARRSDLD 111 + EAA+LLR+G VAFPTETVYGLGADAR+T AVE +F AKGRPSDNPLIVHIA + L Sbjct: 22 LEEAASLLRDGELVAFPTETVYGLGADARNTTAVEGIFKAKGRPSDNPLIVHIADENQLA 81 Query: 112 RLVTEVHPSAAALIGAFWPGPLTVVLPVRPGVLSPLVTAGLDTVGVRMPDHPLALALIRA 171 LV A L+ WPGPLT+VLPVR G +SPLVTAGL TVG+RMPDHP ALALIR Sbjct: 82 ELVLPYPELAGRLMKELWPGPLTIVLPVRTGAVSPLVTAGLTTVGIRMPDHPAALALIRQ 141 Query: 172 ADCPVAAPSANRSGRPSPTLAAHVLEDLAGYIGGVLD 208 + CPVAAPSANRSGRPSPTLAAHVLEDLAG I G++D Sbjct: 142 SGCPVAAPSANRSGRPSPTLAAHVLEDLAGKISGIVD 178 >C1P8R2.1 C1P8R2_BACCO Sua5/YciO/YrdC/YwlC family protein Length = 353 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 113/186 (60%), Positives = 134/186 (72%), Gaps = 10/186 (5%) Query: 23 STRYWKLSAAGGPGVDPALYPQSEGDRQAIAEAAALLREGSTVAFPTETVYGLGADARST 82 T+YW + +P YPQ +AEAA LL+E TVAFPTETVYGLGADA S Sbjct: 2 ETKYWVVDKTVE---NPGAYPQ-------LAEAAQLLKEKQTVAFPTETVYGLGADATSD 51 Query: 83 AAVEAVFAAKGRPSDNPLIVHIARRSDLDRLVTEVHPSAAALIGAFWPGPLTVVLPVRPG 142 AV+ +F AKGRPSDNPLIVHIA L+ L E+ +A L+ AFWPGPLT+V+ V+ G Sbjct: 52 EAVDKIFKAKGRPSDNPLIVHIAEEKQLEELAEEIPETAKVLMKAFWPGPLTLVVKVKKG 111 Query: 143 VLSPLVTAGLDTVGVRMPDHPLALALIRAADCPVAAPSANRSGRPSPTLAAHVLEDLAGY 202 LS VTAGLDTVG+RMP HP+ALALIR + P+AAPSANRSG+PSPTLA HV EDLAG Sbjct: 112 ALSEKVTAGLDTVGIRMPRHPVALALIRMSGLPIAAPSANRSGKPSPTLARHVREDLAGK 171 Query: 203 IGGVLD 208 I G++D Sbjct: 172 IAGIVD 177 >B7HFM3.1 B7HFM3_BACC4 Sua5/yciO/yrdC/ywlC family protein Length = 346 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 108/167 (64%), Positives = 126/167 (75%), Gaps = 8/167 (4%) Query: 42 YPQSEGDRQAIAEAAALLREGSTVAFPTETVYGLGADARSTAAVEAVFAAKGRPSDNPLI 101 YPQ + EAA LLRE VAFPTETVYGLGA+A A+ +F AKGRPSDNPLI Sbjct: 18 YPQ-------LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLI 70 Query: 102 VHIARRSDLDRLVTEVHPSAAALIGAFWPGPLTVVLPVRPGVLSPLVTAGLDTVGVRMPD 161 VHI +S LD +VTE+ P A L+ FWPGPLT++LP + G+ S VTAGL+TVGVRMPD Sbjct: 71 VHIGTKSQLDGIVTEIPPVAEKLMAHFWPGPLTIILPRKEGI-SEKVTAGLNTVGVRMPD 129 Query: 162 HPLALALIRAADCPVAAPSANRSGRPSPTLAAHVLEDLAGYIGGVLD 208 HP+ALALI A+ PVAAPSANRSGRPSPTLA+HV EDL G I G++D Sbjct: 130 HPIALALIEEANVPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVD 176 >Q814U4.1 Q814U4_BACCR SUA5 protein Length = 346 Score = 213 bits (543), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 107/167 (64%), Positives = 125/167 (74%), Gaps = 8/167 (4%) Query: 42 YPQSEGDRQAIAEAAALLREGSTVAFPTETVYGLGADARSTAAVEAVFAAKGRPSDNPLI 101 YPQ + EAA LLRE VAFPTETVYGLGA+A A+ +F AKGRPSDNPLI Sbjct: 18 YPQ-------LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLI 70 Query: 102 VHIARRSDLDRLVTEVHPSAAALIGAFWPGPLTVVLPVRPGVLSPLVTAGLDTVGVRMPD 161 VHI +S LD +V E+ P A L+ FWPGPLT++LP + G+ S VTAGL+TVGVRMPD Sbjct: 71 VHIGTKSQLDGIVKEIPPVAEKLMAHFWPGPLTIILPRKEGI-SEKVTAGLNTVGVRMPD 129 Query: 162 HPLALALIRAADCPVAAPSANRSGRPSPTLAAHVLEDLAGYIGGVLD 208 HP+ALALI A+ PVAAPSANRSGRPSPTLA+HV EDL G I G++D Sbjct: 130 HPIALALIEEANVPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVD 176 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,292,969,291 Number of extensions: 55149179 Number of successful extensions: 185285 Number of sequences better than 1.0e-05: 1954 Number of HSP's gapped: 183069 Number of HSP's successfully gapped: 1958 Length of query: 215 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 85 Effective length of database: 1,835,964,253 Effective search space: 156056961505 Effective search space used: 156056961505 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)