BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0162.0008.p (236 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K464.1 B3K464_9BACI L-serine dehydratase, iron-sulfur-dependen... 202 1e-50 C5D8S8.1 C5D8S8_9BACI L-serine dehydratase, iron-sulfur-dependen... 197 6e-49 C3J043.1 C3J043_9BACI L-serine dehydratase, iron-sulfur-dependen... 196 1e-48 B7Y8Q6.1 B7Y8Q6_9BACI L-serine dehydratase, iron-sulfur-dependen... 196 1e-48 Q5L0R1.1 Q5L0R1_GEOKA L-serine dehydratase (L-serine deaminase) ... 193 1e-47 >B3K464.1 B3K464_9BACI L-serine dehydratase, iron-sulfur-dependent, beta subunit Length = 227 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 105/222 (47%), Positives = 143/222 (64%), Gaps = 2/222 (0%) Query: 1 MRFKDVFSIIGPAMVGPSSSHTXXXXXXXXXXXQVLGEPAREAEVTFFGSFAATYQGHGT 60 MRFKDVFSIIGP+MVGPSSSHT ++ G +AE+ F+GSFA TY+GHGT Sbjct: 1 MRFKDVFSIIGPSMVGPSSSHTAGAVRIGRAARRIFGAFPDQAEIVFYGSFAETYRGHGT 60 Query: 61 DRAIAGGLLNFATDDSRLPDSIELAAEAGMEISFGQGTGLFPHPNTVRLHLVGAQTGTEL 120 D A+ GGLL+FATDD R+ +SIELA AG++++F + HPNTV L L G Sbjct: 61 DLAVVGGLLDFATDDMRIRNSIELAEAAGIKLTFKTAQNVAFHPNTVELRLKGGDHTD-- 118 Query: 121 TLTGISIGGGNIEIVDIDGFGVKLTGMYPTVLIHHMDYLGVLASVTDVMRKGQFNIGHMS 180 + G SIGGG++E++ ++GF VK T YP +L+ H D G++A +T ++ G NI +M Sbjct: 119 VIAGASIGGGSVEMLRVNGFDVKFTMNYPVLLVFHDDTPGMVAHITRLLEAGGVNIAYMD 178 Query: 181 LDRKNRSGAALTVLELDEAATPGLLHELRALSAVKSVKVVDL 222 +DRK R G A+TV+E DEA L+ + L +V V + DL Sbjct: 179 VDRKGRGGDAMTVVESDEAVPAELMKHIEGLPSVHRVVIADL 220 >C5D8S8.1 C5D8S8_9BACI L-serine dehydratase, iron-sulfur-dependent, beta subunit EC=4.3.1.17 Length = 220 Score = 197 bits (501), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 100/217 (46%), Positives = 140/217 (64%), Gaps = 2/217 (0%) Query: 1 MRFKDVFSIIGPAMVGPSSSHTXXXXXXXXXXXQVLGEPAREAEVTFFGSFAATYQGHGT 60 M++K VF IIGP M+GPSSSHT + G + A ++F+GSFA TY+GHGT Sbjct: 1 MKYKSVFDIIGPIMIGPSSSHTAGAARIGRVARSLFGRKPKWAHISFYGSFAQTYKGHGT 60 Query: 61 DRAIAGGLLNFATDDSRLPDSIELAAEAGMEISFGQGTGLFPHPNTVRLHLVGAQTGTEL 120 D AI GGLL+F T D R+P S+E+A + GME++F + + HPNT R+ +G + G EL Sbjct: 61 DVAIVGGLLDFDTFDERIPYSLEIAKQEGMEVTFYEEDAIPHHPNTARVR-IGDEKG-EL 118 Query: 121 TLTGISIGGGNIEIVDIDGFGVKLTGMYPTVLIHHMDYLGVLASVTDVMRKGQFNIGHMS 180 L GISIGGG IEI++++GF +KL+G +P +LI H D G +ASV +V+ K NIGHM Sbjct: 119 ELVGISIGGGKIEIIELNGFELKLSGHHPALLIMHNDRYGAIASVANVLAKYAINIGHME 178 Query: 181 LDRKNRSGAALTVLELDEAATPGLLHELRALSAVKSV 217 + RK + AL +E+D+ ++ EL AL + V Sbjct: 179 VSRKEKGKEALMTIEIDQPIDQTVIDELTALPHIIQV 215 >C3J043.1 C3J043_9BACI L-serine dehydratase, iron-sulfur-dependent, beta subunit Length = 220 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 104/222 (46%), Positives = 140/222 (63%), Gaps = 3/222 (1%) Query: 1 MRFKDVFSIIGPAMVGPSSSHTXXXXXXXXXXXQVLGEPAREAEVTFFGSFAATYQGHGT 60 M++K VF IIGP MVGPSSSHT ++ G A ++F+GSFA TY+GHGT Sbjct: 1 MKYKSVFDIIGPVMVGPSSSHTAGAVRIGLVARKLFGRKPTWARISFYGSFAETYRGHGT 60 Query: 61 DRAIAGGLLNFATDDSRLPDSIELAAEAGMEISFGQGTGLFPHPNTVRLHLVGAQTGTEL 120 D AIA GLL F T D RLP+++E+A G+++SF + HPNT RL +G G EL Sbjct: 61 DVAIAAGLLGFDTFDERLPNALEIAQAEGVDVSFSAEEAVPHHPNTARLR-IGDDEG-EL 118 Query: 121 TLTGISIGGGNIEIVDIDGFGVKLTGMYPTVLIHHMDYLGVLASVTDVMRKGQFNIGHMS 180 L GISIGGG IEIV+++GF +KL+G +P +LI H D G + +V V+ K + NIGHM Sbjct: 119 ELVGISIGGGKIEIVELNGFALKLSGHHPALLIMHNDRYGTIGAVASVLAKRKINIGHME 178 Query: 181 LDRKNRSGAALTVLELDEAATPGLLHELRALSAVKSV-KVVD 221 + RK + AL +E+D+ T L+ EL L + V K+VD Sbjct: 179 VSRKEKGKEALMAIEVDQPLTDDLIQELEQLPNIIQVAKLVD 220 >B7Y8Q6.1 B7Y8Q6_9BACI L-serine dehydratase, iron-sulfur-dependent, beta subunit Length = 220 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 104/222 (46%), Positives = 140/222 (63%), Gaps = 3/222 (1%) Query: 1 MRFKDVFSIIGPAMVGPSSSHTXXXXXXXXXXXQVLGEPAREAEVTFFGSFAATYQGHGT 60 M++K VF IIGP MVGPSSSHT ++ G A ++F+GSFA TY+GHGT Sbjct: 1 MKYKSVFDIIGPVMVGPSSSHTAGAVRIGLVARKLFGRKPTWARISFYGSFAETYRGHGT 60 Query: 61 DRAIAGGLLNFATDDSRLPDSIELAAEAGMEISFGQGTGLFPHPNTVRLHLVGAQTGTEL 120 D AIA GLL F T D RLP+++E+A G+++SF + HPNT RL +G G EL Sbjct: 61 DVAIAAGLLGFDTFDERLPNALEIAQAEGVDVSFSAEEAVPHHPNTARLR-IGDDEG-EL 118 Query: 121 TLTGISIGGGNIEIVDIDGFGVKLTGMYPTVLIHHMDYLGVLASVTDVMRKGQFNIGHMS 180 L GISIGGG IEIV+++GF +KL+G +P +LI H D G + +V V+ K + NIGHM Sbjct: 119 ELVGISIGGGKIEIVELNGFALKLSGHHPALLIMHNDRYGTIGAVASVLAKRKINIGHME 178 Query: 181 LDRKNRSGAALTVLELDEAATPGLLHELRALSAVKSV-KVVD 221 + RK + AL +E+D+ T L+ EL L + V K+VD Sbjct: 179 VSRKEKGKEALMAIEVDQPLTDDLIQELEQLPNIIQVAKLVD 220 >Q5L0R1.1 Q5L0R1_GEOKA L-serine dehydratase (L-serine deaminase) beta chain EC=4.3.1.17 Length = 220 Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 100/217 (46%), Positives = 135/217 (62%), Gaps = 2/217 (0%) Query: 1 MRFKDVFSIIGPAMVGPSSSHTXXXXXXXXXXXQVLGEPAREAEVTFFGSFAATYQGHGT 60 M++K VF IIGP MVGPSSSHT ++ G A ++F+GSFA TY+GHGT Sbjct: 1 MKYKSVFDIIGPVMVGPSSSHTAGAVRIGLVARKLFGRKPTWARISFYGSFAETYRGHGT 60 Query: 61 DRAIAGGLLNFATDDSRLPDSIELAAEAGMEISFGQGTGLFPHPNTVRLHLVGAQTGTEL 120 D AI GLL F T D RLP+++E+A G+++SF + HPNT RL +G G EL Sbjct: 61 DVAIVAGLLGFDTFDERLPNALEIARAEGVDVSFSAEEAIPHHPNTARLR-IGDDEG-EL 118 Query: 121 TLTGISIGGGNIEIVDIDGFGVKLTGMYPTVLIHHMDYLGVLASVTDVMRKGQFNIGHMS 180 L GISIGGG IEIV+++GF +KL+G +P +LI H D G + +V V+ K + NIGHM Sbjct: 119 ELVGISIGGGKIEIVELNGFALKLSGHHPALLIMHNDRYGTIGAVASVLAKQKINIGHME 178 Query: 181 LDRKNRSGAALTVLELDEAATPGLLHELRALSAVKSV 217 + RK + AL +E+D+ T L+ EL L + V Sbjct: 179 VSRKEKGKEALMAIEVDQPLTDDLIQELEQLPNIIQV 215 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,320,582,717 Number of extensions: 53668478 Number of successful extensions: 129812 Number of sequences better than 1.0e-05: 467 Number of HSP's gapped: 129494 Number of HSP's successfully gapped: 467 Length of query: 236 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 104 Effective length of database: 1,817,122,223 Effective search space: 188980711192 Effective search space used: 188980711192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)