BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0162.0006.p (197 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q67LQ3.1 Q67LQ3_SYMTH HIT family protein 150 6e-35 C0ZES8.1 C0ZES8_BREBN Putative uncharacterized protein 145 2e-33 C2ZQ80.1 C2ZQ80_BACCE Putative uncharacterized protein 131 3e-29 C2Z8N1.1 C2Z8N1_BACCE Putative uncharacterized protein 131 3e-29 Q5WG00.1 Q5WG00_BACSK Putative uncharacterized protein 130 5e-29 >Q67LQ3.1 Q67LQ3_SYMTH HIT family protein Length = 339 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 82/177 (46%), Positives = 106/177 (59%) Query: 18 AGNAVLKEVWQLLRELRIMELLAEYHPRLAGTVPLGIQVEGSDLDIICEVHEPRNFIETA 77 +G A ++ + L+ELRIME+LA Y P LAGT PL + V GSDLDIICEVH+ F T Sbjct: 19 SGTAAQRQAYAALQELRIMEVLAPYDPVLAGTFPLDLNVPGSDLDIICEVHDGEAFGRTL 78 Query: 78 RCHFGQLEGFYAVTRTVEGVVRTKINFSAGGWPIELFGQPLATEKQNAWLHMQVEGRILR 137 +G L GF + G+ F G P+E+FGQP+ + + +AW HM E R+L Sbjct: 79 TEAYGHLPGFAVRSAVKHGLPAVICGFRYGDLPVEVFGQPMPSRENHAWRHMAAEARLLA 138 Query: 138 LLGPGFTENIRALKSGGMKTEPAFAKLLKLEGDPYEEMLVLGRLNPAEFNAVCRRAQ 194 L GPG E IR LK+GG+KTEPAFA+ L GDPYE +L L E + RA+ Sbjct: 139 LAGPGAAEEIRRLKAGGLKTEPAFAEYFALPGDPYETLLALADAPDNELGGLVERAR 195 >C0ZES8.1 C0ZES8_BREBN Putative uncharacterized protein Length = 191 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/178 (44%), Positives = 104/178 (58%), Gaps = 4/178 (2%) Query: 19 GNAVLKEVWQLLRELRIMELLAEYHPRLAGTVPLGIQVEGSDLDIICEVHEPRNFIETAR 78 G K W+ +++ IME+LA+Y P LAGT+PL I VE SDLDIICE + F + R Sbjct: 13 GTMRQKAAWKAIQQTHIMEVLADYRPVLAGTIPLDIDVEQSDLDIICESRDLDQFEQVVR 72 Query: 79 CHFGQLEGFYAVTRTVEGVVRTKINFSAGGWPIELFGQPLATEKQNAWLHMQVEGRILRL 138 FG L F ++G+ I+F G+ ELF QP+A EKQNA+ HM +E R+L + Sbjct: 73 KAFGCLTSFEVTKLDLKGIPTCVISFFTAGFWFELFAQPVAVEKQNAYRHMDIEARLLHI 132 Query: 139 LGPGFTENIRALKSGGMKTEPAFAKLLKLEG-DPYEEMLVLGRLNPAEFNAVCRRAQP 195 G +IRALK G+KTEPAFA+ + G DPYE +L L L E +R QP Sbjct: 133 GGLDACIHIRALKQDGLKTEPAFARYFHIPGDDPYEALLQLESLTEQELR---QRVQP 187 >C2ZQ80.1 C2ZQ80_BACCE Putative uncharacterized protein Length = 176 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 1/163 (0%) Query: 18 AGNAVLKEVWQLLRELRIMELLAEYHPRLAGTVPLGIQVEGSDLDIICEVHEPRNFIETA 77 +GN ++++ +L EL IME LA Y P L GT+P+ I SDLDI+ EV+ F + Sbjct: 10 SGNNKQQKIYDVLNELNIMEDLALYSPVLCGTIPIRIDTPQSDLDIVMEVYNFDVFEQEM 69 Query: 78 RCHFGQLEGFYAVTRTVEGVVRTKINFSAGGWPIELFGQPLATEKQNAWLHMQVEGRILR 137 R +G EGF + ++G K+NF G+ ELF QP QNA+ HM VE +L Sbjct: 70 RSLYGSYEGFKIKKKKIKGTESIKVNFKFEGFDFELFAQPKPVRNQNAYRHMIVEHMLL- 128 Query: 138 LLGPGFTENIRALKSGGMKTEPAFAKLLKLEGDPYEEMLVLGR 180 + P E I LK G+KTEPAFA++L ++GDPY+E+++LG+ Sbjct: 129 MQHPHIREEIIRLKDQGLKTEPAFAQVLNIDGDPYKELILLGQ 171 >C2Z8N1.1 C2Z8N1_BACCE Putative uncharacterized protein Length = 176 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 1/163 (0%) Query: 18 AGNAVLKEVWQLLRELRIMELLAEYHPRLAGTVPLGIQVEGSDLDIICEVHEPRNFIETA 77 +GN ++++ +L EL IME LA Y P L GT+P+ I SDLDI+ EV+ F + Sbjct: 10 SGNNKQQKIYDVLNELNIMEDLALYSPVLCGTIPIRIDTPQSDLDIVMEVYNFDVFEQEM 69 Query: 78 RCHFGQLEGFYAVTRTVEGVVRTKINFSAGGWPIELFGQPLATEKQNAWLHMQVEGRILR 137 R +G EGF + ++G K+NF G+ ELF QP QNA+ HM VE +L Sbjct: 70 RSLYGSYEGFKIKKKKIKGTESIKVNFKFEGFDFELFAQPKPVRNQNAYRHMIVEHMLL- 128 Query: 138 LLGPGFTENIRALKSGGMKTEPAFAKLLKLEGDPYEEMLVLGR 180 + P E I LK G+KTEPAFA++L ++GDPY+E+++LG+ Sbjct: 129 MQHPHIREEIIRLKDQGLKTEPAFAQVLNIDGDPYKELILLGQ 171 >Q5WG00.1 Q5WG00_BACSK Putative uncharacterized protein Length = 177 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 70/164 (42%), Positives = 93/164 (56%), Gaps = 1/164 (0%) Query: 17 NAGNAVLKEVWQLLRELRIMELLAEYHPRLAGTVPLGIQVEGSDLDIICEVHEPRNFIET 76 G + ++LL EL +M L Y P L GT+PLGI + SDLD+ICEV + F T Sbjct: 8 QTGTHSQQLAYRLLTELDLMAALKHYSPVLCGTIPLGIDIPSSDLDVICEVRQFERFERT 67 Query: 77 ARCHFGQLEGFYAVTRTVEGVVRTKINFSAGGWPIELFGQPLATEKQNAWLHMQVEGRIL 136 +G+L F +T+ GV K NF G ELFGQP E Q A+LHM++E +L Sbjct: 68 VTALYGELPQFRLKRKTIRGVPTVKANFRYQGKAFELFGQPQCVECQYAYLHMKIE-HML 126 Query: 137 RLLGPGFTENIRALKSGGMKTEPAFAKLLKLEGDPYEEMLVLGR 180 + P + E +K G+KTEPAFA LL + GDPYE +L G+ Sbjct: 127 LMAHPEWKEKAIEMKKQGVKTEPAFASLLGISGDPYEGLLAYGK 170 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.140 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,272,567,503 Number of extensions: 52482198 Number of successful extensions: 102703 Number of sequences better than 1.0e-05: 95 Number of HSP's gapped: 102615 Number of HSP's successfully gapped: 95 Length of query: 197 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 68 Effective length of database: 1,845,385,268 Effective search space: 125486198224 Effective search space used: 125486198224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)