BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0159.0003.p
         (79 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KLA4.1 B3KLA4_9BACI Putative uncharacterized protein                121   2e-26
B4AJE9.1 B4AJE9_BACPU Conserved domain protein                         87   6e-16
A8FII0.2 Y3395_BACP2 UPF0741 protein BPUM_3395                         87   6e-16
A8VSH9.1 A8VSH9_9BACI NAD-dependent epimerase/dehydratase              86   1e-15
O32280.1 YWZC_BACSU UPF0741 protein ywzC                               81   4e-14

>B3KLA4.1 B3KLA4_9BACI Putative uncharacterized protein
          Length = 73

 Score =  121 bits (303), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 64/73 (87%)

Query: 1  MANDIRICDECNHIKMKSILPKLRKMAPDAEIKTGCISYCGPCGKRPFVYINGRYVSGPT 60
          MANDIR+C++C H K+K+I+PK++KM PDA+IK GC SYCGPCGKR F+YINGRYVS PT
Sbjct: 1  MANDIRVCEKCRHTKLKTIIPKIQKMVPDADIKIGCKSYCGPCGKRAFIYINGRYVSAPT 60

Query: 61 EDEVLAKAEAFVK 73
          EDEVLAKA  FVK
Sbjct: 61 EDEVLAKALPFVK 73


>B4AJE9.1 B4AJE9_BACPU Conserved domain protein
          Length = 73

 Score = 86.7 bits (213), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 54/73 (73%)

Query: 1  MANDIRICDECNHIKMKSILPKLRKMAPDAEIKTGCISYCGPCGKRPFVYINGRYVSGPT 60
          MAN+ R+CD+C+   +K++LP+L+ + PDA+I+ GC SYCGP  K+ F ++N R +S PT
Sbjct: 1  MANEFRVCDDCDATNLKTLLPRLKSVDPDAKIEIGCQSYCGPGRKKAFAFVNNRPLSAPT 60

Query: 61 EDEVLAKAEAFVK 73
          EDE+L K +  VK
Sbjct: 61 EDELLEKVQKKVK 73


>A8FII0.2 Y3395_BACP2 UPF0741 protein BPUM_3395
          Length = 73

 Score = 86.7 bits (213), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 54/73 (73%)

Query: 1  MANDIRICDECNHIKMKSILPKLRKMAPDAEIKTGCISYCGPCGKRPFVYINGRYVSGPT 60
          MAN+ R+CD+C+   +K++LP+L+ + PDA+I+ GC SYCGP  K+ F ++N R +S PT
Sbjct: 1  MANEFRVCDDCDATNLKTLLPRLKSVDPDAKIEIGCQSYCGPGRKKAFAFVNNRPLSAPT 60

Query: 61 EDEVLAKAEAFVK 73
          EDE+L K +  VK
Sbjct: 61 EDELLEKVQKKVK 73


>A8VSH9.1 A8VSH9_9BACI NAD-dependent epimerase/dehydratase
          Length = 79

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 52/77 (67%)

Query: 1  MANDIRICDECNHIKMKSILPKLRKMAPDAEIKTGCISYCGPCGKRPFVYINGRYVSGPT 60
          M N   ICD+C    +K++  KL ++ PDAEI  GC SYCGP  K+PF ++N R VS P 
Sbjct: 1  MGNKFAICDDCQATNIKTLRKKLEELDPDAEIHIGCQSYCGPGRKKPFTFVNERAVSAPD 60

Query: 61 EDEVLAKAEAFVKRPVA 77
          ED+++AK E  +K+PVA
Sbjct: 61 EDQLIAKVEKRMKKPVA 77


>O32280.1 YWZC_BACSU UPF0741 protein ywzC
          Length = 74

 Score = 80.9 bits (198), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 50/65 (76%)

Query: 1  MANDIRICDECNHIKMKSILPKLRKMAPDAEIKTGCISYCGPCGKRPFVYINGRYVSGPT 60
          MAN+ R+CD+C    +K++LP+L+++ PDA+++ GC SYCGP  K+ F ++N R +S PT
Sbjct: 1  MANEFRVCDDCQATNIKTLLPRLKEVDPDAKVEVGCQSYCGPGRKKSFAFVNNRPLSAPT 60

Query: 61 EDEVL 65
          EDE++
Sbjct: 61 EDELI 65


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 463,139,143
Number of extensions: 15280799
Number of successful extensions: 33305
Number of sequences better than 1.0e-05: 117
Number of HSP's gapped: 33306
Number of HSP's successfully gapped: 117
Length of query: 79
Length of database: 3,060,696,203
Length adjustment: 50
Effective length of query: 29
Effective length of database: 2,589,645,453
Effective search space: 75099718137
Effective search space used: 75099718137
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)