BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0157.0048.p
         (128 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBJ6.1 B3KBJ6_9BACI Ferritin Dps family protein                     223   4e-57
Q896C7.1 Q896C7_CLOTE General stress protein 20U                      162   6e-39
Q65FU7.1 Q65FU7_BACLD Dps                                             160   2e-38
B1DAP5.1 B1DAP5_9BACL Ferritin Dps family protein                     160   4e-38
B4ANL4.1 B4ANL4_BACPU Metalloregulation DNA-binding stress protein    159   6e-38

>B3KBJ6.1 B3KBJ6_9BACI Ferritin Dps family protein
          Length = 158

 Score =  223 bits (568), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 101/128 (78%), Positives = 116/128 (90%)

Query: 1   VLYVKIHNYHWYVKGEQFFSLHVKFEELYDDVTLKMDEVAERLLSIKGSPAATMKEYLEL 60
           VLYVK+HNYHWYV GEQF+SLHVKFEELYD++TLKMDEVAERLLSIKG PAATMKEYLEL
Sbjct: 31  VLYVKLHNYHWYVTGEQFYSLHVKFEELYDEITLKMDEVAERLLSIKGKPAATMKEYLEL 90

Query: 61  ATIQEATGKEDTRGMVQTLIEDFATVAEELTEGIELAEQVSDQPTADLFIKIRSDLEKNQ 120
           AT+QEA+G EDTRGMVQ L+EDFATV+EEL EGIE+AE+  D PTAD+F   ++DLEK+ 
Sbjct: 91  ATVQEASGNEDTRGMVQALVEDFATVSEELAEGIEMAEEAGDAPTADMFTGFKADLEKHM 150

Query: 121 WMLRSFLG 128
           WMLRS+LG
Sbjct: 151 WMLRSYLG 158


>Q896C7.1 Q896C7_CLOTE General stress protein 20U
          Length = 149

 Score =  162 bits (411), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 71/128 (55%), Positives = 102/128 (79%)

Query: 1   VLYVKIHNYHWYVKGEQFFSLHVKFEELYDDVTLKMDEVAERLLSIKGSPAATMKEYLEL 60
           VLY+K+HN+HW+VKG+QFF+LH+KFEELY++  L +DE+AER LSI G+P ATMKE LE+
Sbjct: 21  VLYIKLHNFHWFVKGQQFFTLHLKFEELYNEAALHIDELAERQLSIGGNPVATMKECLEI 80

Query: 61  ATIQEATGKEDTRGMVQTLIEDFATVAEELTEGIELAEQVSDQPTADLFIKIRSDLEKNQ 120
           ++I+EATG E    MV T+I D+ T+  EL  G+E+A++ +D+ T+D+ + I + LEK+ 
Sbjct: 81  SSIKEATGNEVAEDMVATIISDYNTIVSELKTGMEIAQKENDETTSDMLLAIHTALEKHV 140

Query: 121 WMLRSFLG 128
           WML+SFLG
Sbjct: 141 WMLKSFLG 148


>Q65FU7.1 Q65FU7_BACLD Dps
          Length = 145

 Score =  160 bits (406), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/128 (56%), Positives = 97/128 (75%)

Query: 1   VLYVKIHNYHWYVKGEQFFSLHVKFEELYDDVTLKMDEVAERLLSIKGSPAATMKEYLEL 60
           VLYVK+HNYHWYVKG+ FF+LH KFEELY +    +D++AERLL+I+GSP  TMKE LE+
Sbjct: 18  VLYVKLHNYHWYVKGKDFFTLHEKFEELYTEAAEHIDDLAERLLAIQGSPVGTMKECLEM 77

Query: 61  ATIQEATGKEDTRGMVQTLIEDFATVAEELTEGIELAEQVSDQPTADLFIKIRSDLEKNQ 120
           + I+EA G E    MVQ +  DF TVAEEL  G+ELA++V+D+ T D+ + I   +EK+ 
Sbjct: 78  SAIKEADGSESAEQMVQNIYNDFLTVAEELKSGMELADEVNDETTGDMLLAIHQSIEKHN 137

Query: 121 WMLRSFLG 128
           WML+++LG
Sbjct: 138 WMLKAYLG 145


>B1DAP5.1 B1DAP5_9BACL Ferritin Dps family protein
          Length = 144

 Score =  160 bits (404), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 69/126 (54%), Positives = 98/126 (77%)

Query: 1   VLYVKIHNYHWYVKGEQFFSLHVKFEELYDDVTLKMDEVAERLLSIKGSPAATMKEYLEL 60
           VLY+K+HN+HWYVKG QFF+LHVKF+E Y++  L +DE+AERLL++KG+P ATM EYL++
Sbjct: 17  VLYIKLHNFHWYVKGTQFFTLHVKFQEFYEEAALHVDELAERLLALKGAPVATMSEYLKI 76

Query: 61  ATIQEATGKEDTRGMVQTLIEDFATVAEELTEGIELAEQVSDQPTADLFIKIRSDLEKNQ 120
           A+I+EA+G E    MV+ LI DF+ V  EL EG+++A+   D+ TAD+ + I + LEK+ 
Sbjct: 77  ASIKEASGSESAHQMVEALITDFSIVISELKEGMDIAQDAGDETTADMLLAIHTTLEKHV 136

Query: 121 WMLRSF 126
           WML +F
Sbjct: 137 WMLTAF 142


>B4ANL4.1 B4ANL4_BACPU Metalloregulation DNA-binding stress protein
          Length = 145

 Score =  159 bits (403), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 70/128 (54%), Positives = 97/128 (75%)

Query: 1   VLYVKIHNYHWYVKGEQFFSLHVKFEELYDDVTLKMDEVAERLLSIKGSPAATMKEYLEL 60
           VLYVK+HNYHWYVKG+ FF+LH KFEELY +    +D++AER+L++ G P ATMKE LE+
Sbjct: 18  VLYVKLHNYHWYVKGKDFFTLHEKFEELYTETATYIDDLAERMLALNGQPVATMKECLEI 77

Query: 61  ATIQEATGKEDTRGMVQTLIEDFATVAEELTEGIELAEQVSDQPTADLFIKIRSDLEKNQ 120
           ++IQEA G E    MV+ L +DF+ +AEEL +G+ELA +V D+ T D+ + I   +EK+ 
Sbjct: 78  SSIQEAEGNESAEQMVKNLYDDFSNIAEELKQGMELAGEVGDETTGDMLLAIHQSIEKHN 137

Query: 121 WMLRSFLG 128
           WML++FLG
Sbjct: 138 WMLKAFLG 145


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 705,018,623
Number of extensions: 24408169
Number of successful extensions: 86375
Number of sequences better than 1.0e-05: 995
Number of HSP's gapped: 86251
Number of HSP's successfully gapped: 995
Length of query: 128
Length of database: 3,060,696,203
Length adjustment: 93
Effective length of query: 35
Effective length of database: 2,184,541,808
Effective search space: 76458963280
Effective search space used: 76458963280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)