BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0047.p (260 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBJ7.1 B3KBJ7_9BACI FeS assembly ATPase SufC 471 e-131 B1DKH0.1 B1DKH0_9BACL FeS assembly ATPase SufC 468 e-130 C0ZL08.1 C0ZL08_BREBN ABC transporter ATP-binding protein SufC 432 e-119 Q5KVK6.1 Q5KVK6_GEOKA ABC transporter (ATP-binding protein) 429 e-118 C3J5F5.1 C3J5F5_9BACI FeS assembly ATPase SufC 429 e-118 >B3KBJ7.1 B3KBJ7_9BACI FeS assembly ATPase SufC Length = 260 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/260 (87%), Positives = 246/260 (94%) Query: 1 MAADFVIEGLKATIEGKEILKGINLQMKGGEIHAIMGPNGTGKSTLASALMGHPKYEVTE 60 M+ FVIEGLKATIEGKEILKGINL+MKGGE+HAIMGPNGTGKSTLASALMGHPKYEVTE Sbjct: 1 MSTKFVIEGLKATIEGKEILKGINLEMKGGEVHAIMGPNGTGKSTLASALMGHPKYEVTE 60 Query: 61 GTAVLEGEDLLEMAVDERARAGLFLAMQYPSEISGVTNSDFLRSAINSRREEGNEISLIR 120 G L+ ED+LEM VDERARAGLFLAMQYPSEI+GVTNSDFLRS+IN+RR EGNEISLI+ Sbjct: 61 GKVFLDDEDVLEMEVDERARAGLFLAMQYPSEIAGVTNSDFLRSSINARRGEGNEISLIK 120 Query: 121 FIRQMEAKMKELDMNPEFLHRYLNEGFSGGEKKRNEILQMMMLDPKIVILDEIDSGLDID 180 FIRQME KMKEL+MNPEF HRYLNEGFSGGEKKRNEILQMMMLDPKIV+LDEIDSGLDID Sbjct: 121 FIRQMEGKMKELEMNPEFAHRYLNEGFSGGEKKRNEILQMMMLDPKIVVLDEIDSGLDID 180 Query: 181 ALKIVAEGVNSMRSPERGFLVITHYQRLLNYIKPDFVHVMMQGRIVKSGGPELAERLEAE 240 AL+IVA GVN+M+S ERGFL+ITHYQRLLNYI PD+VHVMMQGRIVKSGGPELAERLEAE Sbjct: 181 ALRIVANGVNAMKSEERGFLIITHYQRLLNYITPDYVHVMMQGRIVKSGGPELAERLEAE 240 Query: 241 GYEWVKEELGIEDETVGQEA 260 GY+W+KEELGI DETVGQ+A Sbjct: 241 GYDWIKEELGITDETVGQDA 260 >B1DKH0.1 B1DKH0_9BACL FeS assembly ATPase SufC Length = 259 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 227/258 (87%), Positives = 245/258 (94%) Query: 1 MAADFVIEGLKATIEGKEILKGINLQMKGGEIHAIMGPNGTGKSTLASALMGHPKYEVTE 60 MA FVI+GLKA IEGKEILKGINL++KGGEIHAIMGPNGTGKSTLASALMGHPKYEVTE Sbjct: 1 MATHFVIDGLKAEIEGKEILKGINLEIKGGEIHAIMGPNGTGKSTLASALMGHPKYEVTE 60 Query: 61 GTAVLEGEDLLEMAVDERARAGLFLAMQYPSEISGVTNSDFLRSAINSRREEGNEISLIR 120 G+A ++GEDLLEM+VDERARAGLFLAMQYPSEI GVTNSDFLRSAIN+RREEG+EISLI+ Sbjct: 61 GSATIDGEDLLEMSVDERARAGLFLAMQYPSEIPGVTNSDFLRSAINARREEGSEISLIK 120 Query: 121 FIRQMEAKMKELDMNPEFLHRYLNEGFSGGEKKRNEILQMMMLDPKIVILDEIDSGLDID 180 FIRQME KMKEL+MNPEF HRYLNEGFSGGEKKRNEILQM ML+PKIV+LDEIDSGLDID Sbjct: 121 FIRQMEKKMKELEMNPEFAHRYLNEGFSGGEKKRNEILQMAMLEPKIVVLDEIDSGLDID 180 Query: 181 ALKIVAEGVNSMRSPERGFLVITHYQRLLNYIKPDFVHVMMQGRIVKSGGPELAERLEAE 240 ALKIV+ GVN+MRS +RGFL+ITHYQRLLNYI PDFVHVMMQGRIVKSGGPELAERLE E Sbjct: 181 ALKIVSNGVNAMRSEDRGFLIITHYQRLLNYITPDFVHVMMQGRIVKSGGPELAERLENE 240 Query: 241 GYEWVKEELGIEDETVGQ 258 GY+WVKEELGI DETVGQ Sbjct: 241 GYDWVKEELGIVDETVGQ 258 >C0ZL08.1 C0ZL08_BREBN ABC transporter ATP-binding protein SufC Length = 262 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/250 (82%), Positives = 230/250 (92%) Query: 7 IEGLKATIEGKEILKGINLQMKGGEIHAIMGPNGTGKSTLASALMGHPKYEVTEGTAVLE 66 I+ L+A IE KEILKG+NL++KGGE+HAIMGPNGTGKSTLAS LMGHPKYEVT+G ++ Sbjct: 9 IKNLRAKIEDKEILKGLNLEIKGGEVHAIMGPNGTGKSTLASTLMGHPKYEVTDGEVLIN 68 Query: 67 GEDLLEMAVDERARAGLFLAMQYPSEISGVTNSDFLRSAINSRREEGNEISLIRFIRQME 126 EDLLEMAVDERARAGLFLAMQYPSEISGVTNSDFLRSAIN+RR EGNEISL++FIR+M+ Sbjct: 69 DEDLLEMAVDERARAGLFLAMQYPSEISGVTNSDFLRSAINARRGEGNEISLMKFIREMD 128 Query: 127 AKMKELDMNPEFLHRYLNEGFSGGEKKRNEILQMMMLDPKIVILDEIDSGLDIDALKIVA 186 KM L+M+ F HRYLNEGFSGGEKKRNEILQMM+L+P I ILDEIDSGLDIDALKIVA Sbjct: 129 KKMNTLEMDESFSHRYLNEGFSGGEKKRNEILQMMLLEPAICILDEIDSGLDIDALKIVA 188 Query: 187 EGVNSMRSPERGFLVITHYQRLLNYIKPDFVHVMMQGRIVKSGGPELAERLEAEGYEWVK 246 GVN MRS +RGFL+ITHYQRLLNY+KPDFVHVMMQGRIVKSGGPELAERLEAEGY+W+K Sbjct: 189 NGVNEMRSADRGFLIITHYQRLLNYVKPDFVHVMMQGRIVKSGGPELAERLEAEGYDWIK 248 Query: 247 EELGIEDETV 256 EELGIEDETV Sbjct: 249 EELGIEDETV 258 >Q5KVK6.1 Q5KVK6_GEOKA ABC transporter (ATP-binding protein) Length = 259 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/258 (79%), Positives = 234/258 (90%) Query: 3 ADFVIEGLKATIEGKEILKGINLQMKGGEIHAIMGPNGTGKSTLASALMGHPKYEVTEGT 62 A I L +EGKEILKG++L++KGGEIHAIMGPNGTGKSTLASA+MGHPKYEVTEG+ Sbjct: 2 AVLTIRNLHVAVEGKEILKGVDLEVKGGEIHAIMGPNGTGKSTLASAIMGHPKYEVTEGS 61 Query: 63 AVLEGEDLLEMAVDERARAGLFLAMQYPSEISGVTNSDFLRSAINSRREEGNEISLIRFI 122 L+G+D+LEM VDERARAGLFLAMQYPSEISGVTN+DFLR+AIN+R EGNEISL++FI Sbjct: 62 VTLDGQDVLEMEVDERARAGLFLAMQYPSEISGVTNADFLRAAINARLGEGNEISLMKFI 121 Query: 123 RQMEAKMKELDMNPEFLHRYLNEGFSGGEKKRNEILQMMMLDPKIVILDEIDSGLDIDAL 182 R+++ KM L+MNP+ HRYLNEGFSGGEKKRNEILQ+MML+PKI ILDEIDSGLDIDAL Sbjct: 122 RKLDEKMAFLEMNPDMAHRYLNEGFSGGEKKRNEILQLMMLEPKIAILDEIDSGLDIDAL 181 Query: 183 KIVAEGVNSMRSPERGFLVITHYQRLLNYIKPDFVHVMMQGRIVKSGGPELAERLEAEGY 242 KIVA+GVN MRS E G L+ITHYQRLLNYI PD+VHVMMQGRIVKSGGPELA+RLEAEGY Sbjct: 182 KIVAKGVNEMRSSEFGCLIITHYQRLLNYITPDYVHVMMQGRIVKSGGPELAQRLEAEGY 241 Query: 243 EWVKEELGIEDETVGQEA 260 +W+K+ELGIEDETVGQEA Sbjct: 242 DWIKKELGIEDETVGQEA 259 >C3J5F5.1 C3J5F5_9BACI FeS assembly ATPase SufC Length = 259 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/258 (79%), Positives = 234/258 (90%) Query: 3 ADFVIEGLKATIEGKEILKGINLQMKGGEIHAIMGPNGTGKSTLASALMGHPKYEVTEGT 62 A I L +EGKEILKG++L++KGGEIHAIMGPNGTGKSTLASA+MGHPKYEVTEG+ Sbjct: 2 AVLTIRNLHVAVEGKEILKGVDLEVKGGEIHAIMGPNGTGKSTLASAIMGHPKYEVTEGS 61 Query: 63 AVLEGEDLLEMAVDERARAGLFLAMQYPSEISGVTNSDFLRSAINSRREEGNEISLIRFI 122 L+G+D+LEM VDERARAGLFLAMQYPSEISGVTN+DFLR+AIN+R EGNEISL++FI Sbjct: 62 VTLDGQDVLEMEVDERARAGLFLAMQYPSEISGVTNADFLRAAINARLGEGNEISLMKFI 121 Query: 123 RQMEAKMKELDMNPEFLHRYLNEGFSGGEKKRNEILQMMMLDPKIVILDEIDSGLDIDAL 182 R+++ KM L+MNP+ HRYLNEGFSGGEKKRNEILQ+MML+PKI ILDEIDSGLDIDAL Sbjct: 122 RKLDEKMAFLEMNPDMAHRYLNEGFSGGEKKRNEILQLMMLEPKIAILDEIDSGLDIDAL 181 Query: 183 KIVAEGVNSMRSPERGFLVITHYQRLLNYIKPDFVHVMMQGRIVKSGGPELAERLEAEGY 242 KIVA+GVN MRS E G L+ITHYQRLLNYI PD+VHVMMQGRIVKSGGPELA+RLEAEGY Sbjct: 182 KIVAKGVNEMRSSEFGCLIITHYQRLLNYITPDYVHVMMQGRIVKSGGPELAQRLEAEGY 241 Query: 243 EWVKEELGIEDETVGQEA 260 +W+K+ELGIEDETVGQEA Sbjct: 242 DWIKKELGIEDETVGQEA 259 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.136 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,515,322,580 Number of extensions: 63300811 Number of successful extensions: 534614 Number of sequences better than 1.0e-05: 33732 Number of HSP's gapped: 531703 Number of HSP's successfully gapped: 34938 Length of query: 260 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 127 Effective length of database: 1,807,701,208 Effective search space: 229578053416 Effective search space used: 229578053416 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)