BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0046.p (433 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBJ8.1 B3KBJ8_9BACI FeS assembly protein SufD 642 0.0 B1DKG9.1 B1DKG9_9BACL FeS assembly protein SufD 501 e-140 C0ZL07.1 C0ZL07_BREBN Iron-sulfur cluster assembly protein SufD 437 e-121 A6CT46.1 A6CT46_9BACI Putative uncharacterized protein 425 e-117 A3IAW6.1 A3IAW6_9BACI Putative uncharacterized protein 411 e-113 >B3KBJ8.1 B3KBJ8_9BACI FeS assembly protein SufD Length = 434 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/434 (70%), Positives = 359/434 (82%), Gaps = 1/434 (0%) Query: 1 MTTQTILPVDAQLLTDWSQSSGEPGWLKDSRXXXXXXXXXXXXXXXEKTRIDRWNVNNYG 60 MTTQTILPV+A+ L S+S EP WL DSR EK RI+RWN+++YG Sbjct: 1 MTTQTILPVNAEALKALSESKQEPAWLTDSRLAALELAGQLELPKLEKQRIERWNIHSYG 60 Query: 61 TYKAGQTITALSEAPASVAALIKDQEEGSLIIQRNSGAIYVRLAPELAAQGVIFTDLQTA 120 YK + +L E P VA L++ EG L+IQRNSG +Y LAPELAA+GVIFTDL+TA Sbjct: 61 EYKESNKLASLDELPEHVAKLVEGSREGGLVIQRNSGTVYASLAPELAAKGVIFTDLETA 120 Query: 121 VKEHGDLVQRYLHKAVLPDEHSLAALHAALWNGGVFLYVPKNVVVETPLQAVLLTDDAEA 180 VKEH DLV+ YLH+A+ DEH++AALHAA+WNGGVFLYVPKNV ++ PLQAV+LTDDAEA Sbjct: 121 VKEHADLVKPYLHQALKSDEHAMAALHAAVWNGGVFLYVPKNVEIDVPLQAVMLTDDAEA 180 Query: 181 AFVPHILIVADTNSSVTYVDNYVSDKTEAGL-HNGAVEVFVGAGAKVRYATVHQLGEDTT 239 F PH+L+VA+ NS +TYVDNYVSD A + HNG VEVF GAKVRYA+VHQL + T Sbjct: 181 TFAPHVLVVAEANSQITYVDNYVSDSLAAAVTHNGVVEVFAKNGAKVRYASVHQLAGEAT 240 Query: 240 DVTYRRAVVENDGTIEWIVGEMNYGDTASDTKSVLKGNGASSDAKVIAVGSGSQKLNYTT 299 DVT+RRAV++ND +IEWIVGEMN GDTASDT S+LKGNG++SDAK+IAVGSGSQK+NYTT Sbjct: 241 DVTFRRAVLDNDASIEWIVGEMNDGDTASDTMSILKGNGSTSDAKIIAVGSGSQKINYTT 300 Query: 300 QAQHFGKNTPSDMITRAVMRDAATSIINGITKIEKGATRADGQQTEKVLMLSPQARGDAN 359 QA+HFGK++ S MITRAVMR+ A +IINGITKIEKGAT+ADGQQTE+VLMLSP+ARGDAN Sbjct: 301 QAKHFGKSSASQMITRAVMREEAQAIINGITKIEKGATKADGQQTERVLMLSPKARGDAN 360 Query: 360 PILLIDEDDVTAGHAASVGQVNYEQVYYLMSRGISRHDAETLIIYGFLAPVVSQIPLEGL 419 PILLIDEDDVTAGHAASVGQVN EQ+YYLMSRGISR AE+LIIYGFLAPVVS+IPLEGL Sbjct: 361 PILLIDEDDVTAGHAASVGQVNREQIYYLMSRGISRSVAESLIIYGFLAPVVSEIPLEGL 420 Query: 420 RNQLQSLVERKLGQ 433 R+QLQ LVERKLGQ Sbjct: 421 RDQLQGLVERKLGQ 434 >B1DKG9.1 B1DKG9_9BACL FeS assembly protein SufD Length = 395 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 244/388 (62%), Positives = 308/388 (79%), Gaps = 4/388 (1%) Query: 47 EKTRIDRWNVNNYGTYKAGQTITALSEAPASVAALIKDQEEGSLIIQRNSGAIYVRLAPE 106 EK RIDRWN+ G Y+ G+ + +++E P V L+ + E ++++Q NS A+ +L+ E Sbjct: 7 EKMRIDRWNLTAVGAYEQGKAVGSVAELPEVVRELVAEGTE-NIVVQHNSSAVLKQLSAE 65 Query: 107 LAAQGVIFTDLQTAVKEHGDLVQRYLHKAVLPDEHSLAALHAALWNGGVFLYVPKNVVVE 166 LAA+GVI TDL+TA KEH DLV+ YL +AV E+ L A+HAALWNGGVF+YVPKNV VE Sbjct: 66 LAAKGVILTDLETACKEHADLVKPYLFQAVSAGENKLTAMHAALWNGGVFVYVPKNVEVE 125 Query: 167 TPLQAVLLTDDAEAAFVPHILIVADTNSSVTYVDNYVSDKTEAG---LHNGAVEVFVGAG 223 PLQAVL + +AAF PHILIVA++NSSVTYVD VS+ +H+ VEVFV G Sbjct: 126 LPLQAVLFNNKPDAAFAPHILIVAESNSSVTYVDYVVSEPGSIDAPFVHHSIVEVFVKPG 185 Query: 224 AKVRYATVHQLGEDTTDVTYRRAVVENDGTIEWIVGEMNYGDTASDTKSVLKGNGASSDA 283 A VR+ ++H + ++ D+T RRAV+ENDG +EW++G++N G T SDT SVLKGNG++SDA Sbjct: 186 AHVRFGSIHHMADNGVDMTLRRAVIENDGQMEWVIGDLNDGYTVSDTVSVLKGNGSNSDA 245 Query: 284 KVIAVGSGSQKLNYTTQAQHFGKNTPSDMITRAVMRDAATSIINGITKIEKGATRADGQQ 343 KVI++G QK++ TTQA HFG+++ S+M+TRAVMRD AT+IINGITKIEKGAT+A+G Q Sbjct: 246 KVISIGGSDQKMSLTTQATHFGRSSESNMVTRAVMRDNATAIINGITKIEKGATKANGVQ 305 Query: 344 TEKVLMLSPQARGDANPILLIDEDDVTAGHAASVGQVNYEQVYYLMSRGISRHDAETLII 403 TEKVLMLSP+ARGDANPILLIDEDDV AGHAASVGQVN EQVYYLMSRGIS+ DAE LII Sbjct: 306 TEKVLMLSPKARGDANPILLIDEDDVKAGHAASVGQVNPEQVYYLMSRGISKQDAERLII 365 Query: 404 YGFLAPVVSQIPLEGLRNQLQSLVERKL 431 YGFLAPVVS+IP++ +R QLQ L+ERKL Sbjct: 366 YGFLAPVVSEIPIDAVREQLQRLLERKL 393 >C0ZL07.1 C0ZL07_BREBN Iron-sulfur cluster assembly protein SufD Length = 432 Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust. Identities = 215/432 (49%), Positives = 294/432 (68%) Query: 1 MTTQTILPVDAQLLTDWSQSSGEPGWLKDSRXXXXXXXXXXXXXXXEKTRIDRWNVNNYG 60 M+ L D++ +T +S+++ EP W + R EKT+ID+WN ++ Sbjct: 1 MSVDVQLRFDSEAITQYSKANQEPAWFLEKRLAGLKAAGELALPALEKTKIDKWNTVDFD 60 Query: 61 TYKAGQTITALSEAPASVAALIKDQEEGSLIIQRNSGAIYVRLAPELAAQGVIFTDLQTA 120 ++ + A +E V A I +L++Q+N+ ++ ++ EL AQGVIFT A Sbjct: 61 PFQTTTKVAAANELSDLVKAQIDVDSVKNLLVQKNASTVFQAVSDELKAQGVIFTTFADA 120 Query: 121 VKEHGDLVQRYLHKAVLPDEHSLAALHAALWNGGVFLYVPKNVVVETPLQAVLLTDDAEA 180 ++ HGDLVQ+YL + DEH L ALH A+ NGGVFLYVPKNV V+ PLQAV A Sbjct: 121 LQTHGDLVQKYLLNVIALDEHKLTALHTAVVNGGVFLYVPKNVEVDVPLQAVYEIAGDNA 180 Query: 181 AFVPHILIVADTNSSVTYVDNYVSDKTEAGLHNGAVEVFVGAGAKVRYATVHQLGEDTTD 240 PH+LIVA+ NS VTYVD YVS + ++ + N VEV+VGAGA V+ A+V L D D Sbjct: 181 LLAPHVLIVAEANSKVTYVDTYVSGEGKSMVANSLVEVYVGAGASVQVASVRSLSVDVHD 240 Query: 241 VTYRRAVVENDGTIEWIVGEMNYGDTASDTKSVLKGNGASSDAKVIAVGSGSQKLNYTTQ 300 ++RRA VE DG +EWI+GEMN G+T ++ ++LKG + ++ K I+VG+GSQ+ N T+Q Sbjct: 241 YSFRRATVERDGKMEWILGEMNDGNTVANNTTILKGTASIAETKSISVGTGSQRQNLTSQ 300 Query: 301 AQHFGKNTPSDMITRAVMRDAATSIINGITKIEKGATRADGQQTEKVLMLSPQARGDANP 360 QH G +T SDM+++AVM D A SI+NGITKIEKGA +A+G Q E +LMLS ++RGDANP Sbjct: 301 VQHIGTHTESDMVSKAVMTDEAVSILNGITKIEKGAEKANGVQAENILMLSDKSRGDANP 360 Query: 361 ILLIDEDDVTAGHAASVGQVNYEQVYYLMSRGISRHDAETLIIYGFLAPVVSQIPLEGLR 420 ILLIDEDDV AGHAASVG+ + E ++YLMSRGISR AE LII GFL PVV++IP+E ++ Sbjct: 361 ILLIDEDDVKAGHAASVGRFSEESIFYLMSRGISRQGAERLIILGFLEPVVAEIPVEEVK 420 Query: 421 NQLQSLVERKLG 432 N+L+ +ERKLG Sbjct: 421 NRLRQALERKLG 432 >A6CT46.1 A6CT46_9BACI Putative uncharacterized protein Length = 436 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 218/435 (50%), Positives = 286/435 (65%), Gaps = 4/435 (0%) Query: 1 MTTQTILPVDAQLLTDWSQSSGEPGWLKDSRXXXXXXXXXXXXXXXEKTRIDRWNVNNYG 60 MT +T LPV+ L +S+ GEP W D R +KT+I +WN + Sbjct: 1 MTVETKLPVEKDYLDSFSKGQGEPEWFTDLRIQALTKAGELELPKPDKTKITKWNFTEFK 60 Query: 61 TYKA-GQTITALSEAPASVAALIK-DQEEGSLIIQRNSGAIYVRLAPELAAQGVIFTDLQ 118 + + LSE P + ALI D E +L +QRN+ Y+ L+ EL +GVIFTD+ Sbjct: 61 QHTVESKPYQNLSELPEAAKALIDMDSTENNLYVQRNNTPAYLTLSQELKDKGVIFTDIL 120 Query: 119 TAVKEHGDLVQRY-LHKAVLPDEHSLAALHAALWNGGVFLYVPKNVVVETPLQAVLLTDD 177 TAVKEHGDLVQ+Y + + V DEH L ALHAAL NGG FLYVPKNV V P+QAV + D+ Sbjct: 121 TAVKEHGDLVQKYFMQEGVKVDEHKLTALHAALVNGGAFLYVPKNVEVAQPIQAVYIQDN 180 Query: 178 AEAAFVPHILIVADTNSSVTYVDNYVSD-KTEAGLHNGAVEVFVGAGAKVRYATVHQLGE 236 A+ H+L+VAD NSSVTYV+NY+S E G++N EVF AKV Y V L Sbjct: 181 ADTTLFNHVLVVADDNSSVTYVENYISTTDVEQGIYNIVTEVFANNNAKVTYGAVDNLAS 240 Query: 237 DTTDVTYRRAVVENDGTIEWIVGEMNYGDTASDTKSVLKGNGASSDAKVIAVGSGSQKLN 296 T RR DG I+W +G MN GDT S+ + L G+G+ +D K + VG G QK N Sbjct: 241 GITTYVNRRGTAARDGRIDWALGLMNDGDTISENVTNLMGDGSYADTKTVVVGRGKQKQN 300 Query: 297 YTTQAQHFGKNTPSDMITRAVMRDAATSIINGITKIEKGATRADGQQTEKVLMLSPQARG 356 +TT+ HFGKN+ ++ VM+D A+SI NGI KIE GA++++ +Q +VLMLS +ARG Sbjct: 301 FTTKVVHFGKNSEGYILKHGVMKDEASSIFNGIGKIEHGASKSNAEQESRVLMLSEKARG 360 Query: 357 DANPILLIDEDDVTAGHAASVGQVNYEQVYYLMSRGISRHDAETLIIYGFLAPVVSQIPL 416 DANPILLIDEDDVTAGHAASVG+V+ Q+YYLMSRGI +H+AE L+I+GFLAPVV+Q+P+ Sbjct: 361 DANPILLIDEDDVTAGHAASVGRVDPLQLYYLMSRGIPQHEAERLVIHGFLAPVVNQLPI 420 Query: 417 EGLRNQLQSLVERKL 431 EG++ QL ++ERK+ Sbjct: 421 EGVKKQLTEVIERKV 435 >A3IAW6.1 A3IAW6_9BACI Putative uncharacterized protein Length = 435 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 212/434 (48%), Positives = 290/434 (66%), Gaps = 3/434 (0%) Query: 1 MTTQTILPVDAQLLTDWSQSSGEPGWLKDSRXXXXXXXXXXXXXXXEKTRIDRWNVNNYG 60 MT + LPV Q + +S+++GEP W + R ++T I +W+ N+ Sbjct: 1 MTVELNLPVTVQDVRSFSEANGEPTWFTELRAAALDKVTGLDLPKPDRTNITKWDFMNFP 60 Query: 61 TYKA-GQTITALSEAPASVAALIKDQEEGSLIIQRNSGAIYVRLAPELAAQGVIFTDLQT 119 + + +L P LI + +G+L IQRN+ Y++ + ELA +GVIFTD+ T Sbjct: 61 AFTVHSEAYPSLDALPEEAKGLIDLEAQGNLYIQRNNTPAYIKTSQELADKGVIFTDIFT 120 Query: 120 AVKEHGDLVQRY-LHKAVLPDEHSLAALHAALWNGGVFLYVPKNVVVETPLQAVLLTDDA 178 AV+EHG+LVQ+Y + +AV DEH L ALH AL NGGVF+YVPKNVV+E PLQ V L D+A Sbjct: 121 AVREHGELVQKYFMTEAVKVDEHKLTALHTALVNGGVFVYVPKNVVIEQPLQVVFLNDNA 180 Query: 179 EAAFVPHILIVADTNSSVTYVDNYVSDKTEA-GLHNGAVEVFVGAGAKVRYATVHQLGED 237 +A+ H+L+VA+ NS+VTYV+ Y+S EA G N EV V A+V Y V L + Sbjct: 181 DASLYNHVLVVAEANSAVTYVETYISTVEEAKGQANIIAEVVVQDNAQVTYGAVDVLAKG 240 Query: 238 TTDVTYRRAVVENDGTIEWIVGEMNYGDTASDTKSVLKGNGASSDAKVIAVGSGSQKLNY 297 T RRA + D ++W +G MN DT S+ + L G+G+ +D K + VG G QKLN+ Sbjct: 241 FTTYVNRRARLARDAKVDWALGLMNDSDTISENITHLIGDGSHADTKTVVVGRGEQKLNF 300 Query: 298 TTQAQHFGKNTPSDMITRAVMRDAATSIINGITKIEKGATRADGQQTEKVLMLSPQARGD 357 TT+ +H+GKN+ ++ VM+DAA SI NGI IE GAT+AD QQ +VLMLS +ARGD Sbjct: 301 TTEVRHWGKNSNGHILKHGVMKDAAQSIFNGIGYIEHGATKADAQQESRVLMLSEKARGD 360 Query: 358 ANPILLIDEDDVTAGHAASVGQVNYEQVYYLMSRGISRHDAETLIIYGFLAPVVSQIPLE 417 ANPILLIDEDDVTAGHAASVG+V+ Q+YYLMSRGIS+ +AE L+I+GFLAPVV+Q+P+E Sbjct: 361 ANPILLIDEDDVTAGHAASVGRVDPLQLYYLMSRGISKAEAERLVIHGFLAPVVTQLPIE 420 Query: 418 GLRNQLQSLVERKL 431 G++ QL ++ERK+ Sbjct: 421 GVQKQLTEVIERKV 434 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.130 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,388,623,298 Number of extensions: 95424997 Number of successful extensions: 196440 Number of sequences better than 1.0e-05: 2218 Number of HSP's gapped: 193704 Number of HSP's successfully gapped: 2227 Length of query: 433 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 294 Effective length of database: 1,751,175,118 Effective search space: 514845484692 Effective search space used: 514845484692 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)